Wall clock time and date at job start Tue Mar 31 2020 13:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.24622 * 2 1 4 4 C 1.52726 * 109.25459 * 119.46581 * 2 1 3 5 5 C 1.53334 * 108.38389 * 69.25588 * 4 2 1 6 6 C 1.52741 * 108.36651 * 69.91937 * 5 4 2 7 7 H 1.08997 * 109.25636 * 69.14241 * 6 5 4 8 8 N 1.46499 * 109.25235 * 188.61696 * 6 5 4 9 9 C 1.38829 * 119.99562 * 204.99766 * 8 6 5 10 10 C 1.39795 * 119.58729 * 0.02562 * 9 8 6 11 11 C 1.38588 * 119.49266 * 179.97438 * 10 9 8 12 12 C 1.38395 * 118.68193 * 0.02562 * 11 10 9 13 13 C 1.40553 * 119.14557 * 359.97438 * 12 11 10 14 14 C 1.41322 * 119.78225 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99858 * 0.02562 * 14 13 12 16 16 C 1.40025 * 119.99659 * 180.02562 * 14 13 12 17 17 N 1.30738 * 120.00449 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99430 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47318 * 60.00259 * 18 16 14 20 20 H 1.48501 * 109.46775 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47022 * 299.99476 * 18 16 14 22 22 N 1.31955 * 119.58086 * 179.97438 * 9 8 6 23 23 C 1.50636 * 110.57861 * 308.89700 * 6 5 4 24 24 C 1.38902 * 117.74504 * 197.54946 * 23 6 5 25 25 C 1.37936 * 120.54815 * 180.22704 * 24 23 6 26 26 C 1.38262 * 119.76620 * 0.02723 * 25 24 23 27 27 C 1.37932 * 119.77654 * 359.87646 * 26 25 24 28 28 C 1.37664 * 122.56436 * 17.59906 * 23 6 5 29 29 H 1.08995 * 109.47174 * 300.53306 * 1 2 3 30 30 H 1.08997 * 109.47258 * 60.53623 * 1 2 3 31 31 H 1.09008 * 109.47136 * 180.53558 * 1 2 3 32 32 H 1.08998 * 109.46989 * 179.47015 * 3 2 1 33 33 H 1.08998 * 109.46976 * 299.46656 * 3 2 1 34 34 H 1.08997 * 109.47109 * 59.46527 * 3 2 1 35 35 H 1.09005 * 109.68132 * 309.53516 * 4 2 1 36 36 H 1.08999 * 109.68595 * 188.97721 * 4 2 1 37 37 H 1.08997 * 109.68498 * 310.20077 * 5 4 2 38 38 H 1.08997 * 109.68635 * 189.63872 * 5 4 2 39 39 H 0.96996 * 120.00610 * 25.00182 * 8 6 5 40 40 H 1.08003 * 120.25274 * 359.95879 * 10 9 8 41 41 H 1.08005 * 120.66233 * 179.97438 * 11 10 9 42 42 H 1.08000 * 120.42574 * 179.72632 * 12 11 10 43 43 H 0.96999 * 120.00157 * 180.02562 * 17 16 14 44 44 H 1.08004 * 119.73026 * 0.21487 * 24 23 6 45 45 H 1.07999 * 120.12102 * 179.97438 * 25 24 23 46 46 H 1.07998 * 120.11670 * 179.89614 * 26 25 24 47 47 H 1.08001 * 119.73098 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0343 1.4445 0.0000 4 6 2.0336 -0.7092 1.2553 5 6 1.7065 -2.2022 1.1314 6 6 2.5976 -2.8016 0.0453 7 1 3.6300 -2.8159 0.3947 8 7 2.1630 -4.1724 -0.2341 9 6 3.0612 -5.0921 -0.7582 10 6 4.3784 -4.7009 -1.0155 11 6 5.2736 -5.6208 -1.5382 12 6 4.8317 -6.9076 -1.7915 13 6 3.4951 -7.2400 -1.5114 14 6 3.0295 -8.5499 -1.7654 15 1 3.7001 -9.2918 -2.1729 16 6 1.6986 -8.8857 -1.4885 17 7 0.8866 -7.9874 -0.9956 18 14 1.0834 -10.6174 -1.8236 19 1 1.8722 -11.5868 -1.0217 20 1 -0.3502 -10.7146 -1.4484 21 1 1.2386 -10.9271 -3.2676 22 7 2.6611 -6.3248 -1.0062 23 6 2.5131 -1.9863 -1.2186 24 6 2.9492 -2.5755 -2.3985 25 6 2.9021 -1.8797 -3.5886 26 6 2.4175 -0.5850 -3.6081 27 6 1.9821 0.0012 -2.4379 28 6 2.0266 -0.6987 -1.2386 29 1 -0.3633 0.5221 0.8851 30 1 -0.3633 0.5055 -0.8947 31 1 -0.3634 -1.0277 0.0096 32 1 3.1243 1.4488 0.0095 33 1 1.6768 1.9542 -0.8947 34 1 1.6612 1.9596 0.8851 35 1 1.5379 -0.2965 2.1340 36 1 3.1117 -0.5759 1.3449 37 1 0.6590 -2.3270 0.8572 38 1 1.8998 -2.7005 2.0813 39 1 1.2477 -4.4375 -0.0530 40 1 4.6960 -3.6896 -0.8087 41 1 6.2956 -5.3388 -1.7446 42 1 5.5043 -7.6458 -2.2028 43 1 -0.0353 -8.2202 -0.8036 44 1 3.3285 -3.5866 -2.3839 45 1 3.2434 -2.3444 -4.5018 46 1 2.3797 -0.0344 -4.5364 47 1 1.6034 1.0125 -2.4540 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255096700.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:00 Heat of formation + Delta-G solvation = 43.804382 kcal Electronic energy + Delta-G solvation = -27467.353261 eV Core-core repulsion = 23999.593093 eV Total energy + Delta-G solvation = -3467.760168 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.70834 -40.02684 -37.72822 -37.11805 -35.27664 -33.27484 -32.17200 -31.14301 -30.91427 -30.14648 -28.08908 -27.35888 -26.35794 -23.92906 -23.84042 -23.24468 -22.52788 -21.37584 -19.60201 -19.26803 -18.03372 -17.57120 -16.81979 -16.65921 -16.27272 -16.16553 -15.99426 -15.28782 -15.06812 -14.92999 -14.80501 -14.66363 -14.30823 -13.91625 -13.68500 -13.59180 -13.40689 -12.98896 -12.91528 -12.81598 -12.75354 -12.63109 -12.57611 -12.54538 -12.30378 -12.15406 -12.05337 -11.76430 -11.52080 -11.41264 -11.17105 -11.08448 -10.64311 -9.82299 -9.60844 -9.48130 -9.44255 -8.29423 -8.23344 -6.47874 0.48000 0.54953 1.05476 1.33406 1.40302 1.52125 1.58164 2.24221 2.58876 2.91278 2.97125 3.64057 3.71916 3.89971 3.95630 4.04850 4.11180 4.24185 4.29608 4.33665 4.39533 4.44101 4.53893 4.64308 4.65760 4.79300 4.83655 4.88716 4.94027 4.97745 4.99157 5.02181 5.05342 5.10876 5.15017 5.18357 5.21705 5.24224 5.33642 5.37337 5.41699 5.57141 5.67418 5.69870 5.75422 5.84288 5.95596 6.06821 6.19689 6.22003 6.55203 6.82839 6.92748 7.21334 8.33751 8.50479 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.017355 B = 0.003595 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.980794 B = 7787.491546 C = 8181.987821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.023 4.023 3 C -0.137 4.137 4 C -0.100 4.100 5 C -0.120 4.120 6 C 0.204 3.796 7 H 0.074 0.926 8 N -0.724 5.724 9 C 0.405 3.595 10 C -0.360 4.360 11 C -0.031 4.031 12 C -0.344 4.344 13 C 0.261 3.739 14 C -0.472 4.472 15 H 0.086 0.914 16 C 0.028 3.972 17 N -0.750 5.750 18 Si 0.984 3.016 19 H -0.259 1.259 20 H -0.268 1.268 21 H -0.261 1.261 22 N -0.563 5.563 23 C -0.103 4.103 24 C -0.135 4.135 25 C -0.147 4.147 26 C -0.121 4.121 27 C -0.127 4.127 28 C -0.062 4.062 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.392 0.608 40 H 0.111 0.889 41 H 0.125 0.875 42 H 0.101 0.899 43 H 0.276 0.724 44 H 0.114 0.886 45 H 0.116 0.884 46 H 0.143 0.857 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.148 18.400 2.581 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.023 4.023 3 C -0.194 4.194 4 C -0.138 4.138 5 C -0.158 4.158 6 C 0.098 3.902 7 H 0.091 0.909 8 N -0.358 5.358 9 C 0.164 3.836 10 C -0.385 4.385 11 C -0.056 4.056 12 C -0.367 4.367 13 C 0.134 3.866 14 C -0.504 4.504 15 H 0.104 0.896 16 C -0.194 4.194 17 N -0.372 5.372 18 Si 0.805 3.195 19 H -0.184 1.184 20 H -0.193 1.193 21 H -0.185 1.185 22 N -0.286 5.286 23 C -0.104 4.104 24 C -0.153 4.153 25 C -0.165 4.165 26 C -0.139 4.139 27 C -0.145 4.145 28 C -0.063 4.063 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.226 0.774 40 H 0.128 0.872 41 H 0.143 0.857 42 H 0.119 0.881 43 H 0.086 0.914 44 H 0.131 0.869 45 H 0.134 0.866 46 H 0.161 0.839 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.074 18.352 2.849 18.824 hybrid contribution 0.597 -1.243 -0.694 1.544 sum -2.477 17.109 2.156 17.421 Atomic orbital electron populations 1.21934 0.93055 1.01605 1.02824 1.19490 0.96102 0.95655 0.91055 1.21937 1.01008 0.93317 1.03089 1.21621 1.01782 0.92577 0.97800 1.21830 0.99527 0.97082 0.97351 1.19651 0.99143 0.79447 0.91954 0.90862 1.44422 1.11978 1.08407 1.70950 1.18869 0.87625 0.88652 0.88499 1.20832 0.94475 1.00659 1.22576 1.20962 0.98200 0.92473 0.93918 1.21655 0.97873 0.98114 1.19030 1.18644 0.88091 0.92604 0.87250 1.19918 0.96786 0.95606 1.38122 0.89628 1.26930 0.96536 1.03014 0.92956 1.70238 1.05054 1.35469 1.26470 0.85242 0.77722 0.76811 0.79747 1.18354 1.19273 1.18518 1.68211 1.36409 0.99982 1.23970 1.20233 1.00059 0.94764 0.95386 1.21900 0.99008 1.00821 0.93547 1.21243 1.01630 0.96076 0.97568 1.21335 0.98644 0.94561 0.99376 1.21432 1.00671 1.00781 0.91614 1.19812 0.97688 0.92594 0.96205 0.90277 0.92286 0.93855 0.92917 0.91517 0.90563 0.88554 0.91399 0.90968 0.90612 0.77404 0.87156 0.85726 0.88103 0.91370 0.86868 0.86629 0.83945 0.83482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.18 71.98 0.59 -1.76 16 2 C -0.02 -0.43 0.63 -53.04 -0.03 -0.46 16 3 C -0.14 -1.91 7.98 71.98 0.57 -1.33 16 4 C -0.10 -1.86 4.69 30.62 0.14 -1.72 16 5 C -0.12 -2.96 5.38 30.62 0.16 -2.79 16 6 C 0.20 6.65 2.37 44.14 0.10 6.75 16 7 H 0.07 2.52 6.45 -2.39 -0.02 2.51 16 8 N -0.72 -30.02 4.99 -328.53 -1.64 -31.66 16 9 C 0.40 20.14 6.44 133.42 0.86 21.00 16 10 C -0.36 -16.67 6.82 22.73 0.16 -16.52 16 11 C -0.03 -1.47 10.15 22.39 0.23 -1.24 16 12 C -0.34 -18.01 9.83 22.87 0.22 -17.79 16 13 C 0.26 15.19 6.55 40.18 0.26 15.45 16 14 C -0.47 -26.77 9.14 23.46 0.21 -26.56 16 15 H 0.09 4.56 7.85 -2.91 -0.02 4.53 16 16 C 0.03 1.45 5.50 85.29 0.47 1.92 16 17 N -0.75 -41.36 11.46 21.84 0.25 -41.11 16 18 Si 0.98 39.39 29.56 68.60 2.03 41.42 16 19 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 20 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 21 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 22 N -0.56 -32.30 7.89 -186.58 -1.47 -33.77 16 23 C -0.10 -3.33 5.52 -19.86 -0.11 -3.44 16 24 C -0.13 -5.04 8.46 22.36 0.19 -4.85 16 25 C -0.15 -4.75 10.05 22.20 0.22 -4.53 16 26 C -0.12 -3.10 10.05 22.20 0.22 -2.88 16 27 C -0.13 -2.97 8.88 22.36 0.20 -2.77 16 28 C -0.06 -1.60 4.70 -19.86 -0.09 -1.69 16 29 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 0.97 8.04 -2.39 -0.02 0.95 16 31 H 0.04 0.90 6.43 -2.38 -0.02 0.88 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.82 6.36 -2.39 -0.02 0.81 16 34 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.10 1.33 8.12 -2.38 -0.02 1.32 16 36 H 0.07 1.29 8.08 -2.39 -0.02 1.27 16 37 H 0.07 1.81 6.26 -2.39 -0.01 1.79 16 38 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.39 16.63 8.71 -92.71 -0.81 15.82 16 40 H 0.11 4.65 5.69 -2.91 -0.02 4.63 16 41 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 42 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 43 H 0.28 13.80 8.29 -92.71 -0.77 13.03 16 44 H 0.11 5.05 3.85 -2.91 -0.01 5.04 16 45 H 0.12 3.56 8.06 -2.91 -0.02 3.54 16 46 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 47 H 0.15 2.49 6.32 -2.91 -0.02 2.47 16 Total: -1.00 -67.02 361.79 3.94 -63.08 By element: Atomic # 1 Polarization: 47.07 SS G_CDS: 0.18 Total: 47.26 kcal Atomic # 6 Polarization: -49.80 SS G_CDS: 4.59 Total: -45.21 kcal Atomic # 7 Polarization: -103.68 SS G_CDS: -2.86 Total: -106.55 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Total: -67.02 3.94 -63.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255096700.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.886 kcal (2) G-P(sol) polarization free energy of solvation -67.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds