Wall clock time and date at job start Tue Mar 31 2020 14:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46871 * 2 1 4 4 C 1.53003 * 109.46871 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47049 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00129 * 270.00032 * 5 4 3 7 7 C 1.53007 * 109.47250 * 263.15796 * 6 5 4 8 8 C 1.34778 * 120.00081 * 90.00133 * 5 4 3 9 9 O 1.21361 * 119.99669 * 4.11825 * 8 5 4 10 10 C 1.49346 * 120.00225 * 184.12241 * 8 5 4 11 11 O 1.21388 * 119.99816 * 354.27152 * 10 8 5 12 12 N 1.34768 * 120.00153 * 174.27059 * 10 8 5 13 13 C 1.39933 * 120.00051 * 179.97438 * 12 10 8 14 14 C 1.40456 * 125.98096 * 0.02562 * 13 12 10 15 15 C 1.35213 * 107.86914 * 179.71616 * 14 13 12 16 16 N 1.34994 * 107.87294 * 0.42119 * 15 14 13 17 17 C 1.46506 * 125.96970 * 179.83555 * 16 15 14 18 18 C 1.50698 * 109.46819 * 124.72110 * 17 16 15 19 19 H 1.08002 * 119.99831 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99770 * 180.02562 * 18 17 16 21 21 N 1.31507 * 120.00021 * 359.71417 * 20 18 17 22 22 Si 1.86801 * 119.99707 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47290 * 269.71771 * 22 20 18 24 24 H 1.48498 * 109.47234 * 29.72411 * 22 20 18 25 25 H 1.48501 * 109.46958 * 149.71795 * 22 20 18 26 26 N 1.31275 * 125.97731 * 179.97438 * 13 12 10 27 27 H 1.08998 * 109.46842 * 60.00059 * 1 2 3 28 28 H 1.08997 * 109.47107 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47287 * 300.00472 * 1 2 3 30 30 H 1.08995 * 109.46658 * 239.99851 * 2 1 3 31 31 H 1.08998 * 109.46987 * 119.99406 * 2 1 3 32 32 H 1.08999 * 109.47550 * 59.99689 * 3 2 1 33 33 H 1.09008 * 109.46832 * 299.99569 * 3 2 1 34 34 H 1.09002 * 109.47007 * 59.99982 * 4 3 2 35 35 H 1.08998 * 109.46842 * 299.99941 * 4 3 2 36 36 H 1.08998 * 109.47250 * 23.15722 * 6 5 4 37 37 H 1.09005 * 109.47474 * 143.15659 * 6 5 4 38 38 H 1.08994 * 109.47312 * 180.02562 * 7 6 5 39 39 H 1.09006 * 109.46841 * 299.99820 * 7 6 5 40 40 H 1.08992 * 109.47151 * 59.99784 * 7 6 5 41 41 H 0.96998 * 120.00070 * 359.97438 * 12 10 8 42 42 H 1.07999 * 126.06572 * 359.97438 * 14 13 12 43 43 H 1.08002 * 126.06442 * 180.26412 * 15 14 13 44 44 H 1.09000 * 109.46773 * 4.72363 * 17 16 15 45 45 H 1.08995 * 109.47224 * 244.71892 * 17 16 15 46 46 H 0.97001 * 120.00147 * 0.28742 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3030 3.5136 -1.2690 7 6 5.7881 3.4167 -1.6241 8 6 4.2825 3.4598 1.1669 9 8 4.1517 2.8653 2.2169 10 6 4.6916 4.8961 1.1680 11 8 4.9234 5.4619 0.1193 12 7 4.8036 5.5640 2.3331 13 6 5.1875 6.9097 2.3341 14 6 5.4844 7.6839 1.2004 15 6 5.8048 8.9286 1.6204 16 7 5.7248 8.9446 2.9678 17 6 5.9950 10.0962 3.8323 18 6 4.7980 10.3572 4.7098 19 1 3.9234 9.7285 4.6312 20 6 4.8191 11.3994 5.6123 21 7 5.8858 12.1621 5.7113 22 14 3.3350 11.7234 6.6996 23 1 2.4174 12.6696 6.0157 24 1 2.6244 10.4459 6.9608 25 1 3.7837 12.3122 7.9870 26 7 5.3323 7.6695 3.3947 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8901 34 1 3.9337 0.9285 -0.8891 35 1 3.9329 0.9288 0.8909 36 1 3.7101 3.0477 -2.0561 37 1 4.0199 4.5619 -1.1732 38 1 5.9703 3.9304 -2.5680 39 1 6.3810 3.8827 -0.8370 40 1 6.0712 2.3686 -1.7199 41 1 4.6181 5.1120 3.1710 42 1 5.4572 7.3462 0.1749 43 1 6.0788 9.7615 0.9898 44 1 6.1927 10.9739 3.2169 45 1 6.8639 9.8865 4.4559 46 1 6.6562 11.9941 5.1464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123854573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:23 Heat of formation + Delta-G solvation = 10.316107 kcal Electronic energy + Delta-G solvation = -26876.194730 eV Core-core repulsion = 22996.133139 eV Total energy + Delta-G solvation = -3880.061592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.30586 -40.40665 -38.65487 -37.05742 -35.42355 -34.62832 -33.67955 -31.22405 -30.99131 -29.50104 -29.22887 -26.77241 -25.50435 -23.96686 -23.43860 -22.60383 -21.59370 -21.05348 -20.09257 -19.43634 -17.77078 -17.24761 -17.18448 -16.56744 -16.27759 -15.75198 -15.62211 -15.04878 -14.94021 -14.48222 -14.25664 -13.86811 -13.78025 -13.72057 -13.41109 -13.29061 -13.06762 -12.66102 -12.54582 -12.39218 -12.28525 -11.97294 -11.76444 -11.64075 -11.44134 -11.41254 -11.17768 -11.15479 -10.93439 -10.81978 -10.55969 -10.18504 -10.06271 -9.41647 -9.07243 -9.02169 -8.60327 -8.31935 -7.64970 -6.60844 -4.35114 1.16720 1.98491 2.56841 2.94954 2.99936 3.35817 3.40478 3.56525 3.58388 3.65161 4.22549 4.39273 4.48185 4.51796 4.68065 4.79486 4.86739 5.06045 5.12740 5.17486 5.24497 5.28441 5.31719 5.37809 5.40890 5.51523 5.58614 5.60454 5.73008 5.78406 5.85065 5.93427 5.96857 6.05954 6.16512 6.27293 6.36041 6.50459 6.69217 6.80250 7.15544 7.22383 7.53486 7.65881 7.74955 7.90918 8.30972 8.43650 8.58156 9.32996 10.76966 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017702 B = 0.002454 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.331082 B =11407.194106 C =12536.343091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.137 4.137 4 C 0.112 3.888 5 N -0.583 5.583 6 C 0.088 3.912 7 C -0.160 4.160 8 C 0.514 3.486 9 O -0.517 6.517 10 C 0.512 3.488 11 O -0.492 6.492 12 N -0.599 5.599 13 C 0.253 3.747 14 C -0.283 4.283 15 C 0.052 3.948 16 N -0.313 5.313 17 C 0.248 3.752 18 C -0.609 4.609 19 H 0.064 0.936 20 C 0.023 3.977 21 N -0.904 5.904 22 Si 1.079 2.921 23 H -0.285 1.285 24 H -0.286 1.286 25 H -0.281 1.281 26 N -0.292 5.292 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.048 0.952 41 H 0.423 0.577 42 H 0.163 0.837 43 H 0.170 0.830 44 H 0.048 0.952 45 H 0.036 0.964 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.718 -21.381 -16.582 27.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.176 4.176 4 C -0.010 4.010 5 N -0.316 5.316 6 C -0.033 4.033 7 C -0.218 4.218 8 C 0.296 3.704 9 O -0.392 6.392 10 C 0.293 3.707 11 O -0.365 6.365 12 N -0.247 5.247 13 C 0.000 4.000 14 C -0.314 4.314 15 C -0.098 4.098 16 N -0.095 5.095 17 C 0.130 3.870 18 C -0.647 4.647 19 H 0.082 0.918 20 C -0.182 4.182 21 N -0.540 5.540 22 Si 0.906 3.094 23 H -0.212 1.212 24 H -0.212 1.212 25 H -0.207 1.207 26 N -0.123 5.123 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.134 0.866 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.260 0.740 42 H 0.181 0.819 43 H 0.187 0.813 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.228 -20.155 -14.237 25.224 hybrid contribution 0.605 -1.196 -1.718 2.179 sum -4.623 -21.352 -15.955 27.052 Atomic orbital electron populations 1.21761 0.95581 1.01656 1.02006 1.21439 0.96192 0.96065 1.02195 1.22006 0.94980 0.97600 1.02966 1.21665 0.94247 0.81350 1.03775 1.47856 1.63431 1.14156 1.06156 1.22218 0.97144 1.00465 0.83516 1.22078 0.96061 1.01175 1.02501 1.19887 0.78888 0.87205 0.84419 1.90781 1.50411 1.67244 1.30809 1.19962 0.79461 0.87518 0.83795 1.90609 1.47068 1.68709 1.30149 1.42043 1.64401 1.08152 1.10099 1.19019 1.02696 0.84644 0.93629 1.21520 1.17435 0.92686 0.99747 1.22584 1.02311 0.99113 0.85743 1.48873 1.47687 1.08134 1.04798 1.19812 0.98685 0.78964 0.89544 1.22123 1.01260 1.18075 1.23239 0.91753 1.25930 1.02670 0.92387 0.97169 1.70824 1.04637 1.39032 1.39477 0.83386 0.73912 0.76013 0.76089 1.21193 1.21182 1.20682 1.77437 1.24008 0.90995 1.19891 0.92741 0.92678 0.92597 0.91895 0.91667 0.91316 0.91567 0.89954 0.89383 0.90761 0.86569 0.91271 0.91965 0.93241 0.73988 0.81947 0.81290 0.93478 0.94607 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.12 -0.72 5.93 -26.73 -0.16 -0.88 16 3 C -0.14 -1.00 5.54 -26.73 -0.15 -1.15 16 4 C 0.11 0.87 5.41 -4.04 -0.02 0.85 16 5 N -0.58 -5.77 2.49 -174.23 -0.43 -6.20 16 6 C 0.09 0.75 5.71 -4.04 -0.02 0.73 16 7 C -0.16 -1.35 9.74 37.16 0.36 -0.99 16 8 C 0.51 6.62 7.67 -11.63 -0.09 6.53 16 9 O -0.52 -7.63 16.04 5.49 0.09 -7.55 16 10 C 0.51 7.39 7.63 -11.64 -0.09 7.31 16 11 O -0.49 -7.16 8.97 5.46 0.05 -7.11 16 12 N -0.60 -9.79 5.43 -11.58 -0.06 -9.85 16 13 C 0.25 5.00 8.10 -154.55 -1.25 3.75 16 14 C -0.28 -5.25 9.60 -39.82 -0.38 -5.63 16 15 C 0.05 1.00 11.43 -17.24 -0.20 0.80 16 16 N -0.31 -7.17 3.67 -62.56 -0.23 -7.40 16 17 C 0.25 6.18 5.57 -5.19 -0.03 6.15 16 18 C -0.61 -17.00 9.23 -34.44 -0.32 -17.32 16 19 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 20 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 21 N -0.90 -26.17 13.65 55.43 0.76 -25.41 16 22 Si 1.08 24.95 29.90 -169.99 -5.08 19.87 16 23 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 N -0.29 -6.74 12.42 31.41 0.39 -6.35 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 34 H 0.08 0.46 8.07 -51.93 -0.42 0.04 16 35 H 0.09 0.78 7.37 -51.93 -0.38 0.40 16 36 H 0.07 0.46 8.02 -51.93 -0.42 0.04 16 37 H 0.12 1.19 5.38 -51.93 -0.28 0.92 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.67 7.05 -51.93 -0.37 0.30 16 40 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.42 6.46 8.31 -40.82 -0.34 6.13 16 42 H 0.16 2.76 5.91 -52.49 -0.31 2.45 16 43 H 0.17 2.58 8.06 -52.49 -0.42 2.15 16 44 H 0.05 1.13 7.94 -51.93 -0.41 0.71 16 45 H 0.04 0.93 8.00 -51.93 -0.42 0.52 16 46 H 0.27 7.54 7.22 -40.82 -0.29 7.25 16 LS Contribution 383.27 15.07 5.78 5.78 Total: -1.00 -31.96 383.27 -7.89 -39.85 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -7.07 Total: 4.24 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -2.08 Total: 0.14 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.42 Total: -55.22 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: 0.14 Total: -14.66 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.87 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.96 -7.89 -39.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123854573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.168 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds