Wall clock time and date at job start Tue Mar 31 2020 14:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46871 * 2 1 4 4 C 1.53003 * 109.46871 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47049 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00129 * 270.00032 * 5 4 3 7 7 C 1.53007 * 109.47250 * 263.15796 * 6 5 4 8 8 C 1.34778 * 120.00081 * 90.00133 * 5 4 3 9 9 O 1.21361 * 119.99669 * 4.11825 * 8 5 4 10 10 C 1.49346 * 120.00225 * 184.12241 * 8 5 4 11 11 O 1.21388 * 119.99816 * 354.27152 * 10 8 5 12 12 N 1.34768 * 120.00153 * 174.27059 * 10 8 5 13 13 C 1.39933 * 120.00051 * 179.97438 * 12 10 8 14 14 C 1.40456 * 125.98096 * 0.02562 * 13 12 10 15 15 C 1.35213 * 107.86914 * 179.71616 * 14 13 12 16 16 N 1.34994 * 107.87294 * 0.42119 * 15 14 13 17 17 C 1.46506 * 125.96970 * 179.83555 * 16 15 14 18 18 C 1.50698 * 109.46819 * 124.72110 * 17 16 15 19 19 H 1.08002 * 119.99831 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99770 * 180.02562 * 18 17 16 21 21 N 1.31507 * 120.00021 * 359.71417 * 20 18 17 22 22 Si 1.86801 * 119.99707 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47290 * 269.71771 * 22 20 18 24 24 H 1.48498 * 109.47234 * 29.72411 * 22 20 18 25 25 H 1.48501 * 109.46958 * 149.71795 * 22 20 18 26 26 N 1.31275 * 125.97731 * 179.97438 * 13 12 10 27 27 H 1.08998 * 109.46842 * 60.00059 * 1 2 3 28 28 H 1.08997 * 109.47107 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47287 * 300.00472 * 1 2 3 30 30 H 1.08995 * 109.46658 * 239.99851 * 2 1 3 31 31 H 1.08998 * 109.46987 * 119.99406 * 2 1 3 32 32 H 1.08999 * 109.47550 * 59.99689 * 3 2 1 33 33 H 1.09008 * 109.46832 * 299.99569 * 3 2 1 34 34 H 1.09002 * 109.47007 * 59.99982 * 4 3 2 35 35 H 1.08998 * 109.46842 * 299.99941 * 4 3 2 36 36 H 1.08998 * 109.47250 * 23.15722 * 6 5 4 37 37 H 1.09005 * 109.47474 * 143.15659 * 6 5 4 38 38 H 1.08994 * 109.47312 * 180.02562 * 7 6 5 39 39 H 1.09006 * 109.46841 * 299.99820 * 7 6 5 40 40 H 1.08992 * 109.47151 * 59.99784 * 7 6 5 41 41 H 0.96998 * 120.00070 * 359.97438 * 12 10 8 42 42 H 1.07999 * 126.06572 * 359.97438 * 14 13 12 43 43 H 1.08002 * 126.06442 * 180.26412 * 15 14 13 44 44 H 1.09000 * 109.46773 * 4.72363 * 17 16 15 45 45 H 1.08995 * 109.47224 * 244.71892 * 17 16 15 46 46 H 0.97001 * 120.00147 * 0.28742 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3030 3.5136 -1.2690 7 6 5.7881 3.4167 -1.6241 8 6 4.2825 3.4598 1.1669 9 8 4.1517 2.8653 2.2169 10 6 4.6916 4.8961 1.1680 11 8 4.9234 5.4619 0.1193 12 7 4.8036 5.5640 2.3331 13 6 5.1875 6.9097 2.3341 14 6 5.4844 7.6839 1.2004 15 6 5.8048 8.9286 1.6204 16 7 5.7248 8.9446 2.9678 17 6 5.9950 10.0962 3.8323 18 6 4.7980 10.3572 4.7098 19 1 3.9234 9.7285 4.6312 20 6 4.8191 11.3994 5.6123 21 7 5.8858 12.1621 5.7113 22 14 3.3350 11.7234 6.6996 23 1 2.4174 12.6696 6.0157 24 1 2.6244 10.4459 6.9608 25 1 3.7837 12.3122 7.9870 26 7 5.3323 7.6695 3.3947 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8901 34 1 3.9337 0.9285 -0.8891 35 1 3.9329 0.9288 0.8909 36 1 3.7101 3.0477 -2.0561 37 1 4.0199 4.5619 -1.1732 38 1 5.9703 3.9304 -2.5680 39 1 6.3810 3.8827 -0.8370 40 1 6.0712 2.3686 -1.7199 41 1 4.6181 5.1120 3.1710 42 1 5.4572 7.3462 0.1749 43 1 6.0788 9.7615 0.9898 44 1 6.1927 10.9739 3.2169 45 1 6.8639 9.8865 4.4559 46 1 6.6562 11.9941 5.1464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123854573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:22 Heat of formation + Delta-G solvation = -8.692071 kcal Electronic energy + Delta-G solvation = -26877.018987 eV Core-core repulsion = 22996.133139 eV Total energy + Delta-G solvation = -3880.885848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.58834 -41.74487 -39.80090 -37.96282 -36.55976 -35.78942 -35.32905 -32.76059 -31.88241 -31.09033 -29.98619 -28.44624 -26.72537 -25.10427 -24.61623 -23.86146 -22.58287 -22.07596 -21.49212 -20.60513 -19.27005 -18.80743 -18.37508 -17.87614 -17.36388 -16.88946 -16.54375 -16.28870 -16.09779 -15.73575 -15.61532 -15.31166 -15.04191 -14.69718 -14.55142 -14.16958 -14.04122 -13.95425 -13.77646 -13.69976 -13.31174 -13.26143 -13.01566 -12.64364 -12.45254 -12.30031 -12.27245 -12.13701 -11.99592 -11.94620 -11.85353 -11.63336 -11.46330 -11.03261 -10.70107 -10.48617 -9.95332 -9.85759 -9.29200 -8.79472 -6.56968 0.02045 0.81761 1.05205 1.49604 1.57320 1.68292 1.70953 1.78436 2.20279 2.38332 2.47656 2.99986 3.05566 3.80407 3.90737 3.93558 4.07470 4.10865 4.22470 4.33965 4.40069 4.48980 4.59014 4.60473 4.65246 4.71364 4.72089 4.75711 4.77277 4.84306 4.89778 4.96819 5.05774 5.13775 5.25214 5.32939 5.36884 5.41443 5.47855 5.52425 5.70884 5.80538 5.89885 6.01959 6.24887 6.39891 6.47764 6.73758 6.87233 7.18031 8.57542 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017702 B = 0.002454 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.331082 B =11407.194106 C =12536.343091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.131 4.131 4 C 0.109 3.891 5 N -0.570 5.570 6 C 0.086 3.914 7 C -0.156 4.156 8 C 0.514 3.486 9 O -0.542 6.542 10 C 0.514 3.486 11 O -0.489 6.489 12 N -0.604 5.604 13 C 0.262 3.738 14 C -0.282 4.282 15 C 0.059 3.941 16 N -0.340 5.340 17 C 0.258 3.742 18 C -0.622 4.622 19 H 0.043 0.957 20 C -0.018 4.018 21 N -0.922 5.922 22 Si 1.121 2.879 23 H -0.267 1.267 24 H -0.282 1.282 25 H -0.275 1.275 26 N -0.345 5.345 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.034 0.966 40 H 0.063 0.937 41 H 0.425 0.575 42 H 0.182 0.818 43 H 0.207 0.793 44 H 0.059 0.941 45 H 0.017 0.983 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.555 -22.710 -19.013 30.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.170 4.170 4 C -0.012 4.012 5 N -0.301 5.301 6 C -0.035 4.035 7 C -0.214 4.214 8 C 0.296 3.704 9 O -0.420 6.420 10 C 0.295 3.705 11 O -0.362 6.362 12 N -0.254 5.254 13 C 0.008 3.992 14 C -0.312 4.312 15 C -0.089 4.089 16 N -0.122 5.122 17 C 0.139 3.861 18 C -0.660 4.660 19 H 0.062 0.938 20 C -0.218 4.218 21 N -0.559 5.559 22 Si 0.942 3.058 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.201 1.201 26 N -0.176 5.176 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.134 0.866 35 H 0.095 0.905 36 H 0.127 0.873 37 H 0.117 0.883 38 H 0.100 0.900 39 H 0.053 0.947 40 H 0.082 0.918 41 H 0.263 0.737 42 H 0.199 0.801 43 H 0.224 0.776 44 H 0.077 0.923 45 H 0.035 0.965 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.061 -21.517 -16.743 27.929 hybrid contribution 0.871 -0.929 -1.141 1.710 sum -5.190 -22.446 -17.884 29.165 Atomic orbital electron populations 1.21775 0.95664 1.02087 1.01635 1.21425 0.96088 0.95133 1.02907 1.21951 0.94505 0.98417 1.02126 1.21898 0.94540 0.79933 1.04851 1.48019 1.61666 1.14826 1.05636 1.22332 0.97901 0.99817 0.83486 1.22041 0.95275 1.01994 1.02095 1.19603 0.79333 0.86301 0.85166 1.90776 1.52047 1.67351 1.31833 1.20375 0.78729 0.88236 0.83121 1.90601 1.46560 1.69071 1.29960 1.42194 1.64989 1.07075 1.11093 1.19341 1.00796 0.85687 0.93381 1.21785 1.17006 0.92331 1.00124 1.23278 1.00614 1.00503 0.84544 1.48633 1.49942 1.07779 1.05823 1.19464 0.96821 0.80210 0.89614 1.22297 1.01606 1.17838 1.24230 0.93821 1.27239 1.04414 0.92074 0.98109 1.70914 1.05080 1.39805 1.40052 0.82858 0.71511 0.76453 0.74990 1.19175 1.20797 1.20051 1.77344 1.26587 0.91740 1.21879 0.92304 0.91873 0.93805 0.89990 0.92127 0.93939 0.90608 0.86613 0.90543 0.87318 0.88267 0.89983 0.94692 0.91832 0.73710 0.80110 0.77588 0.92345 0.96511 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 71.98 0.71 -0.89 16 2 C -0.12 -1.16 5.93 30.60 0.18 -0.98 16 3 C -0.13 -1.68 5.54 30.60 0.17 -1.51 16 4 C 0.11 1.43 5.41 86.38 0.47 1.90 16 5 N -0.57 -10.19 2.49 -823.50 -2.05 -12.24 16 6 C 0.09 1.22 5.71 86.38 0.49 1.71 16 7 C -0.16 -2.23 9.74 71.98 0.70 -1.53 16 8 C 0.51 12.96 7.67 87.24 0.67 13.62 16 9 O -0.54 -16.10 16.04 -3.28 -0.05 -16.15 16 10 C 0.51 14.63 7.63 87.24 0.67 15.29 16 11 O -0.49 -13.68 8.97 -3.37 -0.03 -13.71 16 12 N -0.60 -19.99 5.43 -308.90 -1.68 -21.66 16 13 C 0.26 10.44 8.10 133.40 1.08 11.52 16 14 C -0.28 -10.19 9.60 22.11 0.21 -9.98 16 15 C 0.06 2.18 11.43 83.51 0.95 3.14 16 16 N -0.34 -15.76 3.67 -351.84 -1.29 -17.05 16 17 C 0.26 13.17 5.57 85.63 0.48 13.65 16 18 C -0.62 -35.45 9.23 25.60 0.24 -35.22 16 19 H 0.04 2.63 7.81 -2.91 -0.02 2.60 16 20 C -0.02 -1.04 5.46 84.66 0.46 -0.57 16 21 N -0.92 -53.82 13.65 21.45 0.29 -53.52 16 22 Si 1.12 50.18 29.90 68.60 2.05 52.23 16 23 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 26 N -0.34 -16.31 12.42 -54.54 -0.68 -16.99 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.12 0.81 8.07 -2.39 -0.02 0.79 16 35 H 0.08 1.24 7.37 -2.39 -0.02 1.23 16 36 H 0.11 0.87 8.02 -2.39 -0.02 0.85 16 37 H 0.10 1.83 5.38 -2.42 -0.01 1.81 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.03 0.69 7.05 -2.38 -0.02 0.68 16 40 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 41 H 0.43 13.46 8.31 -92.71 -0.77 12.69 16 42 H 0.18 5.80 5.91 -2.91 -0.02 5.79 16 43 H 0.21 5.81 8.06 -2.91 -0.02 5.79 16 44 H 0.06 2.82 7.94 -2.39 -0.02 2.80 16 45 H 0.02 0.92 8.00 -2.39 -0.02 0.90 16 46 H 0.26 15.05 7.22 -92.71 -0.67 14.38 16 Total: -1.00 -70.33 383.27 4.37 -65.96 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.32 Total: 22.98 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 7.48 Total: 10.16 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -5.40 Total: -121.47 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.08 Total: -29.86 kcal Atomic # 14 Polarization: 50.18 SS G_CDS: 2.05 Total: 52.23 kcal Total: -70.33 4.37 -65.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123854573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.273 kcal (2) G-P(sol) polarization free energy of solvation -70.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds