Wall clock time and date at job start Tue Mar 31 2020 14:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46792 * 2 1 4 4 C 1.50697 * 109.47259 * 119.99681 * 2 1 3 5 5 N 1.31140 * 126.55016 * 120.29713 * 4 2 1 6 6 C 1.34491 * 105.61108 * 180.12463 * 5 4 2 7 7 C 1.50706 * 126.28691 * 179.90795 * 6 5 4 8 8 H 1.09000 * 109.49738 * 359.63654 * 7 6 5 9 9 C 1.53116 * 109.50496 * 119.71499 * 7 6 5 10 10 C 1.53114 * 109.16292 * 177.59737 * 9 7 6 11 11 C 1.53042 * 109.27920 * 302.34978 * 10 9 7 12 12 N 1.46842 * 109.52307 * 59.17212 * 11 10 9 13 13 C 1.46904 * 110.99532 * 174.16320 * 12 11 10 14 14 C 1.50701 * 109.47097 * 66.05355 * 13 12 11 15 15 O 1.21291 * 120.00054 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99874 * 180.02562 * 14 13 12 17 17 C 1.37098 * 119.99550 * 179.97438 * 16 14 13 18 18 H 1.08002 * 120.00269 * 359.97438 * 17 16 14 19 19 C 1.38949 * 119.99713 * 179.97438 * 17 16 14 20 20 N 1.31421 * 120.00090 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00313 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47207 * 89.99780 * 21 19 17 23 23 H 1.48498 * 109.47350 * 210.00323 * 21 19 17 24 24 H 1.48509 * 109.46893 * 330.00013 * 21 19 17 25 25 C 1.46842 * 111.20420 * 298.26213 * 12 11 10 26 26 N 1.29946 * 107.42990 * 359.64601 * 6 5 4 27 27 O 1.21300 * 110.24653 * 0.22675 * 26 6 5 28 28 H 1.09001 * 109.47088 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47337 * 299.99656 * 1 2 3 30 30 H 1.09001 * 109.47172 * 60.00678 * 1 2 3 31 31 H 1.09001 * 109.47589 * 239.99874 * 2 1 3 32 32 H 1.09004 * 109.46858 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47165 * 299.99329 * 3 2 1 34 34 H 1.08999 * 109.46899 * 60.00076 * 3 2 1 35 35 H 1.09000 * 109.51932 * 297.50236 * 9 7 6 36 36 H 1.09002 * 109.52335 * 57.69119 * 9 7 6 37 37 H 1.09002 * 109.50279 * 62.28509 * 10 9 7 38 38 H 1.08997 * 109.50864 * 182.40199 * 10 9 7 39 39 H 1.08991 * 109.46182 * 179.19523 * 11 10 9 40 40 H 1.09007 * 109.45722 * 299.16153 * 11 10 9 41 41 H 1.09007 * 109.47011 * 186.04318 * 13 12 11 42 42 H 1.08991 * 109.47436 * 306.04596 * 13 12 11 43 43 H 0.97001 * 120.00108 * 359.97438 * 16 14 13 44 44 H 0.96996 * 120.00057 * 179.97438 * 20 19 17 45 45 H 1.09009 * 109.46283 * 301.72863 * 25 12 11 46 46 H 1.08995 * 109.46520 * 181.75762 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 2.7937 -1.7776 1.2599 6 6 2.9816 -2.0523 2.5630 7 6 3.7895 -3.1929 3.1267 8 1 4.2056 -3.7825 2.3098 9 6 4.9274 -2.6370 3.9873 10 6 5.7062 -3.8021 4.6042 11 6 4.7503 -4.6705 5.4251 12 7 3.6805 -5.1785 4.5569 13 6 2.8224 -6.1272 5.2791 14 6 2.0820 -5.4024 6.3734 15 8 2.2528 -4.2126 6.5360 16 7 1.2308 -6.0764 7.1720 17 6 0.5577 -5.4170 8.1679 18 1 0.7098 -4.3576 8.3127 19 6 -0.3202 -6.1117 8.9909 20 7 -0.5056 -7.4007 8.8144 21 14 -1.2368 -5.2136 10.3482 22 1 -2.5275 -4.7032 9.8202 23 1 -1.4968 -6.1483 11.4724 24 1 -0.4147 -4.0750 10.8312 25 6 2.8891 -4.0789 3.9905 26 7 2.3432 -1.1505 3.2469 27 8 1.7911 -0.3701 2.5001 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6765 1.9563 0.8900 35 1 5.5956 -2.0403 3.3664 36 1 4.5135 -2.0148 4.7808 37 1 6.1525 -4.4019 3.8110 38 1 6.4914 -3.4125 5.2521 39 1 5.2989 -5.5090 5.8540 40 1 4.3149 -4.0736 6.2266 41 1 2.1057 -6.5688 4.5865 42 1 3.4375 -6.9138 5.7159 43 1 1.0945 -7.0280 7.0422 44 1 -1.1182 -7.8858 9.3891 45 1 2.4624 -3.4847 4.7986 46 1 2.0860 -4.4878 3.3774 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330666040.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:43 Heat of formation + Delta-G solvation = 22.470759 kcal Electronic energy + Delta-G solvation = -27755.545008 eV Core-core repulsion = 23876.010482 eV Total energy + Delta-G solvation = -3879.534526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.54730 -39.53526 -37.54689 -36.52792 -35.60729 -34.07279 -33.04991 -31.73093 -31.29090 -30.16121 -27.63592 -27.36696 -24.75250 -24.62786 -24.34653 -22.71775 -22.53079 -20.59859 -19.34344 -19.10082 -18.00062 -17.87079 -17.32542 -16.12426 -15.99183 -15.58851 -14.82007 -14.72882 -14.56594 -14.40312 -14.14605 -13.90111 -13.71653 -13.47967 -13.06497 -12.90244 -12.64233 -12.55249 -12.35407 -12.02446 -11.90648 -11.83761 -11.66463 -11.54402 -11.43955 -11.20459 -11.17488 -10.98791 -10.69070 -10.57338 -10.43266 -10.34298 -10.30513 -10.24916 -9.69644 -9.47627 -9.21198 -8.00423 -7.41073 -6.46043 -3.87264 1.21027 2.28348 2.78223 3.14072 3.23571 3.29560 3.50745 3.81960 4.07226 4.14459 4.39099 4.47291 4.55864 4.68632 4.92872 5.01022 5.01864 5.15973 5.19064 5.20598 5.24818 5.35846 5.38503 5.45948 5.53655 5.68020 5.74529 5.75361 5.78599 5.83089 5.83681 5.90478 6.03413 6.04778 6.12839 6.17314 6.21144 6.32133 6.34500 6.61761 6.78720 7.34665 7.44073 7.50871 8.00687 8.27789 8.55454 9.12586 9.48499 9.99354 10.70531 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012998 B = 0.003175 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.625150 B = 8815.639571 C =10233.364644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.002 3.998 3 C -0.151 4.151 4 C 0.170 3.830 5 N -0.480 5.480 6 C 0.182 3.818 7 C 0.010 3.990 8 H 0.101 0.899 9 C -0.109 4.109 10 C -0.109 4.109 11 C 0.038 3.962 12 N -0.511 5.511 13 C 0.042 3.958 14 C 0.405 3.595 15 O -0.591 6.591 16 N -0.556 5.556 17 C -0.301 4.301 18 H 0.102 0.898 19 C 0.024 3.976 20 N -0.899 5.899 21 Si 0.929 3.071 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.269 1.269 25 C 0.043 3.957 26 N -0.369 5.369 27 O 0.080 5.920 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.114 0.886 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.393 0.607 44 H 0.272 0.728 45 H 0.096 0.904 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.474 10.704 -17.500 21.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 C -0.209 4.209 4 C -0.051 4.051 5 N -0.213 5.213 6 C -0.091 4.091 7 C -0.011 4.011 8 H 0.119 0.881 9 C -0.148 4.148 10 C -0.147 4.147 11 C -0.089 4.089 12 N -0.234 5.234 13 C -0.090 4.090 14 C 0.190 3.810 15 O -0.478 6.478 16 N -0.191 5.191 17 C -0.431 4.431 18 H 0.120 0.880 19 C -0.178 4.178 20 N -0.540 5.540 21 Si 0.756 3.244 22 H -0.204 1.204 23 H -0.208 1.208 24 H -0.194 1.194 25 C -0.086 4.086 26 N -0.074 5.074 27 O 0.020 5.980 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.132 0.868 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.226 0.774 44 H 0.082 0.918 45 H 0.114 0.886 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.927 10.763 -16.943 21.234 hybrid contribution -1.143 0.139 1.181 1.650 sum 5.784 10.902 -15.762 20.018 Atomic orbital electron populations 1.21921 0.92206 1.03318 1.03578 1.19798 0.97005 0.95719 0.89268 1.21914 1.01853 0.93542 1.03574 1.28801 0.94496 0.92680 0.89081 1.71888 1.16809 1.13279 1.19307 1.25816 0.99375 0.98665 0.85276 1.19589 0.93614 0.89598 0.98296 0.88129 1.21589 0.95995 0.98260 0.98907 1.21514 0.97441 0.96084 0.99612 1.22266 0.92462 0.98652 0.95562 1.62370 1.11620 1.15928 1.33506 1.22042 0.96454 0.95553 0.94928 1.21114 0.84844 0.88634 0.86385 1.90410 1.68496 1.15415 1.73455 1.42054 1.37212 1.11275 1.28591 1.19718 1.19952 0.95519 1.07936 0.87983 1.25286 0.97776 0.95629 0.99130 1.69613 1.37079 1.07271 1.39998 0.85868 0.79618 0.78977 0.79911 1.20354 1.20830 1.19401 1.22380 0.94321 0.93200 0.98666 1.74739 1.11906 1.03974 1.16757 1.85303 1.54276 1.43091 1.15292 0.91731 0.91344 0.90512 0.86818 0.91897 0.90525 0.91388 0.92212 0.91141 0.91433 0.91417 0.91431 0.91228 0.89300 0.89091 0.77369 0.91769 0.88644 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.17 37.16 0.34 -0.64 16 2 C 0.00 0.02 3.39 -91.77 -0.31 -0.29 16 3 C -0.15 -0.87 9.18 37.16 0.34 -0.53 16 4 C 0.17 2.10 7.02 -13.05 -0.09 2.01 16 5 N -0.48 -7.09 11.55 -9.87 -0.11 -7.20 16 6 C 0.18 2.98 6.73 -156.37 -1.05 1.92 16 7 C 0.01 0.15 2.82 -91.69 -0.26 -0.11 16 8 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 9 C -0.11 -1.59 5.27 -26.61 -0.14 -1.73 16 10 C -0.11 -1.48 6.09 -26.65 -0.16 -1.64 16 11 C 0.04 0.64 5.09 -3.83 -0.02 0.62 16 12 N -0.51 -8.85 4.86 -236.12 -1.15 -9.99 16 13 C 0.04 0.76 5.86 -4.97 -0.03 0.73 16 14 C 0.40 9.45 7.20 -10.98 -0.08 9.38 16 15 O -0.59 -15.48 11.20 5.55 0.06 -15.42 16 16 N -0.56 -14.11 5.29 -10.96 -0.06 -14.17 16 17 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 18 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 19 C 0.02 0.64 5.50 -17.46 -0.10 0.55 16 20 N -0.90 -24.54 13.05 55.50 0.72 -23.81 16 21 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 C 0.04 0.79 4.24 -3.84 -0.02 0.77 16 26 N -0.37 -6.40 12.16 30.90 0.38 -6.02 16 27 O 0.08 1.17 11.31 18.11 0.20 1.38 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.03 8.06 -51.93 -0.42 0.61 16 40 H 0.07 1.41 6.00 -51.92 -0.31 1.10 16 41 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.09 1.48 8.06 -51.93 -0.42 1.06 16 43 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 44 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.10 2.13 5.36 -51.92 -0.28 1.85 16 46 H 0.06 1.14 8.12 -51.93 -0.42 0.72 16 LS Contribution 372.35 15.07 5.61 5.61 Total: -1.00 -32.15 372.35 -8.26 -40.41 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -7.18 Total: 10.56 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -1.72 Total: 2.45 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: -0.22 Total: -61.20 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.27 Total: -14.04 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.15 -8.26 -40.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330666040.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.882 kcal (2) G-P(sol) polarization free energy of solvation -32.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds