Wall clock time and date at job start Tue Mar 31 2020 14:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46792 * 2 1 4 4 C 1.50697 * 109.47259 * 119.99681 * 2 1 3 5 5 N 1.31140 * 126.55016 * 120.29713 * 4 2 1 6 6 C 1.34491 * 105.61108 * 180.12463 * 5 4 2 7 7 C 1.50706 * 126.28691 * 179.90795 * 6 5 4 8 8 H 1.09000 * 109.49738 * 359.63654 * 7 6 5 9 9 C 1.53116 * 109.50496 * 119.71499 * 7 6 5 10 10 C 1.53114 * 109.16292 * 177.59737 * 9 7 6 11 11 C 1.53042 * 109.27920 * 302.34978 * 10 9 7 12 12 N 1.46842 * 109.52307 * 59.17212 * 11 10 9 13 13 C 1.46904 * 110.99532 * 174.16320 * 12 11 10 14 14 C 1.50701 * 109.47097 * 66.05355 * 13 12 11 15 15 O 1.21291 * 120.00054 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99874 * 180.02562 * 14 13 12 17 17 C 1.37098 * 119.99550 * 179.97438 * 16 14 13 18 18 H 1.08002 * 120.00269 * 359.97438 * 17 16 14 19 19 C 1.38949 * 119.99713 * 179.97438 * 17 16 14 20 20 N 1.31421 * 120.00090 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00313 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47207 * 89.99780 * 21 19 17 23 23 H 1.48498 * 109.47350 * 210.00323 * 21 19 17 24 24 H 1.48509 * 109.46893 * 330.00013 * 21 19 17 25 25 C 1.46842 * 111.20420 * 298.26213 * 12 11 10 26 26 N 1.29946 * 107.42990 * 359.64601 * 6 5 4 27 27 O 1.21300 * 110.24653 * 0.22675 * 26 6 5 28 28 H 1.09001 * 109.47088 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47337 * 299.99656 * 1 2 3 30 30 H 1.09001 * 109.47172 * 60.00678 * 1 2 3 31 31 H 1.09001 * 109.47589 * 239.99874 * 2 1 3 32 32 H 1.09004 * 109.46858 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47165 * 299.99329 * 3 2 1 34 34 H 1.08999 * 109.46899 * 60.00076 * 3 2 1 35 35 H 1.09000 * 109.51932 * 297.50236 * 9 7 6 36 36 H 1.09002 * 109.52335 * 57.69119 * 9 7 6 37 37 H 1.09002 * 109.50279 * 62.28509 * 10 9 7 38 38 H 1.08997 * 109.50864 * 182.40199 * 10 9 7 39 39 H 1.08991 * 109.46182 * 179.19523 * 11 10 9 40 40 H 1.09007 * 109.45722 * 299.16153 * 11 10 9 41 41 H 1.09007 * 109.47011 * 186.04318 * 13 12 11 42 42 H 1.08991 * 109.47436 * 306.04596 * 13 12 11 43 43 H 0.97001 * 120.00108 * 359.97438 * 16 14 13 44 44 H 0.96996 * 120.00057 * 179.97438 * 20 19 17 45 45 H 1.09009 * 109.46283 * 301.72863 * 25 12 11 46 46 H 1.08995 * 109.46520 * 181.75762 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 2.7937 -1.7776 1.2599 6 6 2.9816 -2.0523 2.5630 7 6 3.7895 -3.1929 3.1267 8 1 4.2056 -3.7825 2.3098 9 6 4.9274 -2.6370 3.9873 10 6 5.7062 -3.8021 4.6042 11 6 4.7503 -4.6705 5.4251 12 7 3.6805 -5.1785 4.5569 13 6 2.8224 -6.1272 5.2791 14 6 2.0820 -5.4024 6.3734 15 8 2.2528 -4.2126 6.5360 16 7 1.2308 -6.0764 7.1720 17 6 0.5577 -5.4170 8.1679 18 1 0.7098 -4.3576 8.3127 19 6 -0.3202 -6.1117 8.9909 20 7 -0.5056 -7.4007 8.8144 21 14 -1.2368 -5.2136 10.3482 22 1 -2.5275 -4.7032 9.8202 23 1 -1.4968 -6.1483 11.4724 24 1 -0.4147 -4.0750 10.8312 25 6 2.8891 -4.0789 3.9905 26 7 2.3432 -1.1505 3.2469 27 8 1.7911 -0.3701 2.5001 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6765 1.9563 0.8900 35 1 5.5956 -2.0403 3.3664 36 1 4.5135 -2.0148 4.7808 37 1 6.1525 -4.4019 3.8110 38 1 6.4914 -3.4125 5.2521 39 1 5.2989 -5.5090 5.8540 40 1 4.3149 -4.0736 6.2266 41 1 2.1057 -6.5688 4.5865 42 1 3.4375 -6.9138 5.7159 43 1 1.0945 -7.0280 7.0422 44 1 -1.1182 -7.8858 9.3891 45 1 2.4624 -3.4847 4.7986 46 1 2.0860 -4.4878 3.3774 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330666040.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:42 Heat of formation + Delta-G solvation = -1.730040 kcal Electronic energy + Delta-G solvation = -27756.594433 eV Core-core repulsion = 23876.010482 eV Total energy + Delta-G solvation = -3880.583952 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.72647 -41.13492 -39.17908 -37.35356 -36.77800 -35.97410 -34.43852 -33.34161 -32.86512 -31.41507 -29.00032 -28.11968 -26.56943 -25.92345 -25.36299 -24.13071 -23.64340 -21.75622 -21.04974 -20.43401 -19.85844 -19.18334 -18.44309 -17.85048 -17.09694 -16.85127 -16.49821 -16.24247 -15.81481 -15.73909 -15.66510 -15.22621 -15.15410 -14.48586 -14.31430 -14.28295 -13.67458 -13.65307 -13.50466 -13.37034 -13.09104 -13.07550 -12.95174 -12.75303 -12.51628 -12.49473 -12.31251 -12.22981 -12.18200 -12.12897 -11.92911 -11.81461 -11.63913 -11.51807 -11.39543 -11.01248 -10.88294 -10.04358 -9.09549 -8.51249 -6.01269 0.13466 1.10374 1.31301 1.35781 1.48391 1.85242 1.95905 2.24504 2.39875 2.95231 3.05698 3.14245 3.20249 3.68126 3.74148 3.84342 3.90332 4.00422 4.04007 4.18293 4.33363 4.35369 4.39784 4.47579 4.49082 4.60135 4.62871 4.70984 4.76595 4.82933 4.85652 4.89707 4.94544 4.96512 4.99132 5.07446 5.08803 5.16969 5.30134 5.32320 5.34088 5.42849 5.82184 5.97125 6.01701 6.53656 7.06569 7.15314 7.49177 8.04993 8.64303 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012998 B = 0.003175 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.625150 B = 8815.639571 C =10233.364644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.003 3.997 3 C -0.147 4.147 4 C 0.184 3.816 5 N -0.497 5.497 6 C 0.172 3.828 7 C 0.016 3.984 8 H 0.117 0.883 9 C -0.104 4.104 10 C -0.099 4.099 11 C 0.036 3.964 12 N -0.496 5.496 13 C 0.049 3.951 14 C 0.405 3.595 15 O -0.621 6.621 16 N -0.569 5.569 17 C -0.334 4.334 18 H 0.074 0.926 19 C -0.011 4.011 20 N -0.917 5.917 21 Si 0.990 3.010 22 H -0.272 1.272 23 H -0.267 1.267 24 H -0.275 1.275 25 C 0.051 3.949 26 N -0.406 5.406 27 O 0.075 5.925 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.131 0.869 32 H 0.057 0.943 33 H 0.106 0.894 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.039 0.961 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.027 0.973 41 H 0.108 0.892 42 H 0.119 0.881 43 H 0.397 0.603 44 H 0.279 0.721 45 H 0.051 0.949 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.162 10.763 -19.404 23.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.017 4.017 3 C -0.205 4.205 4 C -0.036 4.036 5 N -0.229 5.229 6 C -0.101 4.101 7 C -0.005 4.005 8 H 0.135 0.865 9 C -0.143 4.143 10 C -0.137 4.137 11 C -0.091 4.091 12 N -0.218 5.218 13 C -0.083 4.083 14 C 0.192 3.808 15 O -0.509 6.509 16 N -0.205 5.205 17 C -0.464 4.464 18 H 0.092 0.908 19 C -0.211 4.211 20 N -0.558 5.558 21 Si 0.814 3.186 22 H -0.197 1.197 23 H -0.191 1.191 24 H -0.200 1.200 25 C -0.078 4.078 26 N -0.114 5.114 27 O 0.016 5.984 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.126 0.874 31 H 0.148 0.852 32 H 0.076 0.924 33 H 0.125 0.875 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.045 0.955 41 H 0.126 0.874 42 H 0.137 0.863 43 H 0.231 0.769 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.624 10.813 -18.874 23.049 hybrid contribution -1.359 0.192 1.670 2.162 sum 6.265 11.005 -17.204 21.362 Atomic orbital electron populations 1.21949 0.91167 1.02907 1.04799 1.20206 0.97715 0.96498 0.87300 1.21933 1.01560 0.92231 1.04783 1.29897 0.92549 0.91713 0.89435 1.71891 1.18152 1.14489 1.18391 1.25985 0.99425 0.98720 0.85974 1.19558 0.93307 0.89285 0.98310 0.86475 1.21556 0.95960 0.98595 0.98172 1.21508 0.96830 0.95274 1.00088 1.22331 0.92647 0.99214 0.94946 1.62486 1.11083 1.15339 1.32917 1.22173 0.96868 0.95771 0.93470 1.22181 0.83766 0.88431 0.86447 1.90432 1.69025 1.17181 1.74240 1.42115 1.38066 1.11420 1.28929 1.19611 1.22004 0.94757 1.10028 0.90784 1.26023 0.97918 0.96424 1.00724 1.69666 1.37380 1.08016 1.40726 0.84976 0.78231 0.77898 0.77525 1.19719 1.19132 1.20001 1.22173 0.94943 0.93137 0.97562 1.74738 1.13275 1.05108 1.18281 1.85256 1.54213 1.42754 1.16170 0.92955 0.92066 0.87376 0.85157 0.92373 0.87527 0.91986 0.90047 0.94171 0.89022 0.89474 0.89620 0.95509 0.87420 0.86301 0.76929 0.91170 0.93056 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.17 71.98 0.66 -1.01 16 2 C 0.00 0.04 3.39 -11.54 -0.04 0.00 16 3 C -0.15 -1.38 9.18 71.98 0.66 -0.72 16 4 C 0.18 4.47 7.02 88.38 0.62 5.09 16 5 N -0.50 -14.47 11.55 -303.21 -3.50 -17.98 16 6 C 0.17 5.72 6.73 138.47 0.93 6.65 16 7 C 0.02 0.49 2.82 -11.49 -0.03 0.46 16 8 H 0.12 3.27 8.14 -2.39 -0.02 3.26 16 9 C -0.10 -3.00 5.27 30.67 0.16 -2.84 16 10 C -0.10 -2.52 6.09 30.65 0.19 -2.33 16 11 C 0.04 1.19 5.09 86.33 0.44 1.63 16 12 N -0.50 -16.82 4.86 -900.93 -4.38 -21.20 16 13 C 0.05 1.74 5.86 85.56 0.50 2.25 16 14 C 0.40 19.48 7.20 87.66 0.63 20.11 16 15 O -0.62 -34.31 11.20 -3.06 -0.03 -34.34 16 16 N -0.57 -29.74 5.29 -306.98 -1.62 -31.36 16 17 C -0.33 -19.41 9.68 84.04 0.81 -18.59 16 18 H 0.07 4.63 7.16 -2.91 -0.02 4.61 16 19 C -0.01 -0.58 5.50 84.92 0.47 -0.12 16 20 N -0.92 -50.18 13.05 21.66 0.28 -49.89 16 21 Si 0.99 43.96 29.55 68.60 2.03 45.99 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 25 C 0.05 1.91 4.24 86.33 0.37 2.27 16 26 N -0.41 -14.74 12.16 -60.33 -0.73 -15.47 16 27 O 0.07 2.25 11.31 74.87 0.85 3.10 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.09 2.47 8.06 -2.39 -0.02 2.45 16 40 H 0.03 1.12 6.00 -2.38 -0.01 1.10 16 41 H 0.11 3.48 8.14 -2.38 -0.02 3.46 16 42 H 0.12 3.63 8.06 -2.39 -0.02 3.61 16 43 H 0.40 19.68 7.90 -92.71 -0.73 18.95 16 44 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 45 H 0.05 2.43 5.36 -2.38 -0.01 2.42 16 46 H 0.06 2.10 8.12 -2.39 -0.02 2.08 16 Total: -1.00 -73.41 372.35 -0.49 -73.89 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: 0.26 Total: 34.40 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 6.37 Total: 12.86 kcal Atomic # 7 Polarization: -125.95 SS G_CDS: -9.95 Total: -135.90 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: 0.81 Total: -31.25 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -73.41 -0.49 -73.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330666040.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.161 kcal (2) G-P(sol) polarization free energy of solvation -73.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds