Wall clock time and date at job start Tue Mar 31 2020 14:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46820 * 2 1 4 4 C 1.50697 * 109.46831 * 180.02562 * 3 2 1 5 5 N 1.30449 * 125.98636 * 269.68735 * 4 3 2 6 6 N 1.39932 * 108.89930 * 179.88639 * 5 4 3 7 7 H 0.97002 * 125.75814 * 180.15845 * 6 5 4 8 8 C 1.34261 * 108.49113 * 0.38848 * 6 5 4 9 9 C 1.38046 * 107.41643 * 359.77448 * 8 6 5 10 10 C 1.47430 * 126.41866 * 180.02562 * 9 8 6 11 11 O 1.21600 * 120.00291 * 179.97438 * 10 9 8 12 12 N 1.34775 * 119.99556 * 359.97438 * 10 9 8 13 13 C 1.46507 * 119.99938 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47154 * 179.97438 * 13 12 10 15 15 H 1.08995 * 109.51031 * 60.00046 * 14 13 12 16 16 C 1.53289 * 109.50860 * 180.10127 * 14 13 12 17 17 N 1.47154 * 108.38116 * 172.22703 * 16 14 13 18 18 C 1.36934 * 120.98193 * 129.48888 * 17 16 14 19 19 H 1.08001 * 120.00205 * 206.22305 * 18 17 16 20 20 C 1.38816 * 120.00213 * 26.22164 * 18 17 16 21 21 N 1.31617 * 119.99694 * 16.91216 * 20 18 17 22 22 Si 1.86799 * 120.00116 * 196.90734 * 20 18 17 23 23 H 1.48501 * 109.46994 * 60.00204 * 22 20 18 24 24 H 1.48496 * 109.47078 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47135 * 300.00084 * 22 20 18 26 26 C 1.47153 * 118.03573 * 309.45935 * 17 16 14 27 27 C 1.53302 * 108.38136 * 50.53991 * 26 17 16 28 28 O 1.42954 * 109.26177 * 307.71914 * 27 26 17 29 29 H 1.08997 * 109.46824 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46722 * 60.00504 * 1 2 3 31 31 H 1.08996 * 109.46881 * 299.99997 * 1 2 3 32 32 H 1.09000 * 109.47147 * 119.99802 * 2 1 3 33 33 H 1.08996 * 109.46881 * 240.00003 * 2 1 3 34 34 H 1.09000 * 109.47099 * 299.99832 * 3 2 1 35 35 H 1.09004 * 109.47326 * 59.99962 * 3 2 1 36 36 H 1.07995 * 126.29766 * 179.79918 * 8 6 5 37 37 H 0.97003 * 120.00502 * 0.02562 * 12 10 9 38 38 H 1.08994 * 109.46846 * 300.00060 * 13 12 10 39 39 H 1.09003 * 109.46729 * 59.99869 * 13 12 10 40 40 H 1.08997 * 109.68390 * 291.94757 * 16 14 13 41 41 H 1.09002 * 109.68405 * 52.47038 * 16 14 13 42 42 H 0.97001 * 119.99919 * 180.02562 * 21 20 18 43 43 H 1.09007 * 109.67879 * 170.25735 * 26 17 16 44 44 H 1.08997 * 109.68795 * 290.77852 * 26 17 16 45 45 H 1.09003 * 109.51075 * 67.61977 * 27 26 17 46 46 H 1.08995 * 109.50930 * 187.77173 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3139 1.4481 1.0546 6 7 5.6513 1.4433 0.6429 7 1 6.4247 1.4437 1.2284 8 6 5.6837 1.4432 -0.6994 9 6 4.3768 1.4427 -1.1442 10 6 3.9305 1.4419 -2.5493 11 8 2.7428 1.4411 -2.8100 12 7 4.8390 1.4421 -3.5448 13 6 4.3956 1.4419 -4.9412 14 6 5.6161 1.4428 -5.8638 15 1 6.2169 0.5535 -5.6737 16 6 5.1531 1.4451 -7.3251 17 7 6.3320 1.6349 -8.1851 18 6 6.5769 0.7973 -9.2404 19 1 7.5876 0.6540 -9.5930 20 6 5.5260 0.1322 -9.8571 21 7 4.2886 0.5393 -9.6688 22 14 5.8680 -1.3405 -10.9542 23 1 6.5482 -2.3985 -10.1648 24 1 4.5868 -1.8676 -11.4888 25 1 6.7409 -0.9257 -12.0816 26 6 7.2397 2.7517 -7.8780 27 6 7.6010 2.6857 -6.3897 28 8 6.4012 2.6116 -5.6159 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 6.5692 1.4431 -1.3175 37 1 5.7865 1.4424 -3.3369 38 1 3.7962 0.5518 -5.1318 39 1 3.7956 2.3317 -5.1319 40 1 4.6762 0.4937 -7.5607 41 1 4.4465 2.2595 -7.4851 42 1 3.5542 0.0744 -10.0994 43 1 8.1446 2.6653 -8.4796 44 1 6.7439 3.6979 -8.0944 45 1 8.2098 1.8013 -6.2017 46 1 8.1595 3.5791 -6.1107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035423953.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:19 Heat of formation + Delta-G solvation = 1.734817 kcal Electronic energy + Delta-G solvation = -27367.057112 eV Core-core repulsion = 23486.623408 eV Total energy + Delta-G solvation = -3880.433704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.59311 -39.17182 -38.27568 -35.43102 -34.67217 -34.24888 -31.76345 -31.56534 -31.20103 -30.04548 -27.43360 -27.14680 -25.51865 -23.38678 -23.04079 -22.07363 -21.64862 -20.37122 -19.86403 -19.47223 -18.53105 -16.98123 -16.43461 -16.01353 -15.50262 -15.27450 -15.22725 -15.00743 -14.53733 -14.37050 -14.23572 -14.02622 -13.80906 -13.46320 -13.24077 -13.07527 -12.91550 -12.79355 -12.16720 -12.05335 -11.62105 -11.53164 -11.33580 -11.13598 -11.10391 -10.84970 -10.75994 -10.65123 -10.43716 -10.31029 -10.04510 -9.74967 -9.69394 -9.62745 -9.10521 -9.05385 -8.70436 -8.56787 -6.78450 -5.86697 -3.30648 1.33629 2.03809 2.47172 3.33122 3.39765 3.40700 3.43768 3.54960 4.23155 4.30397 4.41826 4.44459 4.89643 5.03732 5.09065 5.18215 5.20143 5.29080 5.34269 5.43522 5.54910 5.62810 5.68489 5.75316 5.83340 5.84429 5.89905 5.97486 6.03846 6.10810 6.20948 6.23757 6.26634 6.33889 6.39625 6.48629 6.70574 6.75768 6.85856 7.04633 7.32900 7.46309 7.67934 7.76762 7.81431 8.30699 8.47520 9.08379 9.71314 10.28277 11.21308 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016161 B = 0.002834 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.179681 B = 9877.260333 C =11001.923197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.045 4.045 4 C 0.139 3.861 5 N -0.301 5.301 6 N -0.464 5.464 7 H 0.443 0.557 8 C 0.103 3.897 9 C -0.280 4.280 10 C 0.588 3.412 11 O -0.541 6.541 12 N -0.718 5.718 13 C 0.135 3.865 14 C 0.055 3.945 15 H 0.055 0.945 16 C 0.153 3.847 17 N -0.594 5.594 18 C -0.259 4.259 19 H 0.068 0.932 20 C 0.004 3.996 21 N -0.901 5.901 22 Si 0.905 3.095 23 H -0.283 1.283 24 H -0.289 1.289 25 H -0.282 1.282 26 C 0.109 3.891 27 C 0.050 3.950 28 O -0.390 6.390 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.186 0.814 37 H 0.397 0.603 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.032 0.968 42 H 0.257 0.743 43 H 0.061 0.939 44 H 0.027 0.973 45 H 0.042 0.958 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.621 1.175 19.986 20.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.085 4.085 4 C -0.030 4.030 5 N -0.124 5.124 6 N -0.168 5.168 7 H 0.287 0.713 8 C -0.050 4.050 9 C -0.295 4.295 10 C 0.375 3.625 11 O -0.419 6.419 12 N -0.369 5.369 13 C 0.011 3.989 14 C -0.004 4.004 15 H 0.073 0.927 16 C 0.026 3.974 17 N -0.318 5.318 18 C -0.388 4.388 19 H 0.086 0.914 20 C -0.195 4.195 21 N -0.544 5.544 22 Si 0.735 3.265 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.208 1.208 26 C -0.018 4.018 27 C -0.028 4.028 28 O -0.310 6.310 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.122 0.878 35 H 0.093 0.907 36 H 0.203 0.797 37 H 0.231 0.769 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.050 0.950 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.044 0.956 45 H 0.061 0.939 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.584 1.254 21.063 21.159 hybrid contribution 1.431 -0.881 -1.377 2.173 sum 3.016 0.373 19.685 19.918 Atomic orbital electron populations 1.21737 0.95332 1.01642 1.01968 1.21363 0.96002 0.95402 1.02128 1.20240 0.85259 0.98746 1.04223 1.22479 0.97105 0.94718 0.88659 1.77152 0.86209 1.26501 1.22505 1.46088 1.07830 1.57434 1.05450 0.71282 1.23189 0.99159 0.96965 0.85639 1.20393 0.92026 1.22245 0.94877 1.17221 0.85756 0.76163 0.83382 1.90747 1.16177 1.50817 1.84200 1.45798 1.09456 1.75330 1.06314 1.21400 0.96052 1.03140 0.78283 1.23153 0.91448 0.87658 0.98183 0.92703 1.21306 0.89184 1.02894 0.84022 1.44042 1.26188 1.30056 1.31531 1.19133 0.92396 1.19229 1.08037 0.91426 1.25060 0.95571 1.00599 0.98302 1.70005 0.98310 1.39987 1.46146 0.86330 0.77047 0.82827 0.80328 1.20966 1.21469 1.20843 1.21599 0.95007 0.91804 0.93352 1.22997 0.86234 1.00186 0.93364 1.87776 1.35548 1.43626 1.64003 0.92763 0.92111 0.92935 0.92452 0.91357 0.87847 0.90729 0.79710 0.76919 0.89937 0.90681 0.88580 0.95024 0.93302 0.92025 0.95555 0.93933 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.16 0.37 -1.04 16 2 C -0.11 -1.21 5.92 -26.73 -0.16 -1.37 16 3 C -0.05 -0.53 5.25 -27.88 -0.15 -0.68 16 4 C 0.14 1.74 6.52 -82.02 -0.53 1.21 16 5 N -0.30 -3.53 12.63 33.89 0.43 -3.10 16 6 N -0.46 -3.82 7.29 30.85 0.22 -3.59 16 7 H 0.44 1.96 8.96 -182.72 -1.64 0.32 16 8 C 0.10 0.89 11.52 -16.56 -0.19 0.70 16 9 C -0.28 -3.47 6.13 -105.06 -0.64 -4.11 16 10 C 0.59 8.72 7.81 -12.52 -0.10 8.62 16 11 O -0.54 -9.65 14.92 5.28 0.08 -9.57 16 12 N -0.72 -9.95 5.44 -61.38 -0.33 -10.28 16 13 C 0.13 2.23 5.37 -4.04 -0.02 2.21 16 14 C 0.06 1.00 2.86 -26.58 -0.08 0.93 16 15 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 16 C 0.15 3.52 4.73 -3.54 -0.02 3.50 16 17 N -0.59 -14.53 3.05 -171.82 -0.52 -15.05 16 18 C -0.26 -6.90 9.65 -15.06 -0.15 -7.04 16 19 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 20 C 0.00 0.10 4.95 -17.43 -0.09 0.02 16 21 N -0.90 -25.53 11.14 55.49 0.62 -24.91 16 22 Si 0.91 21.14 29.59 -169.99 -5.03 16.11 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 26 C 0.11 2.20 6.74 -3.53 -0.02 2.18 16 27 C 0.05 0.84 6.98 37.31 0.26 1.10 16 28 O -0.39 -6.91 10.14 -35.23 -0.36 -7.27 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.10 1.36 6.55 -51.93 -0.34 1.02 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.19 0.90 7.46 -52.49 -0.39 0.51 16 37 H 0.40 4.53 7.27 -40.82 -0.30 4.23 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.10 2.45 6.14 -51.93 -0.32 2.13 16 41 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 376.23 15.07 5.67 5.67 Total: -1.00 -33.11 376.23 -9.18 -42.29 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -8.44 Total: 3.50 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -1.51 Total: 6.21 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: 0.41 Total: -56.94 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.28 Total: -16.84 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.11 -9.18 -42.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035423953.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.026 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds