Wall clock time and date at job start Tue Mar 31 2020 14:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46820 * 2 1 4 4 C 1.50697 * 109.46831 * 180.02562 * 3 2 1 5 5 N 1.30449 * 125.98636 * 269.68735 * 4 3 2 6 6 N 1.39932 * 108.89930 * 179.88639 * 5 4 3 7 7 H 0.97002 * 125.75814 * 180.15845 * 6 5 4 8 8 C 1.34261 * 108.49113 * 0.38848 * 6 5 4 9 9 C 1.38046 * 107.41643 * 359.77448 * 8 6 5 10 10 C 1.47430 * 126.41866 * 180.02562 * 9 8 6 11 11 O 1.21600 * 120.00291 * 179.97438 * 10 9 8 12 12 N 1.34775 * 119.99556 * 359.97438 * 10 9 8 13 13 C 1.46507 * 119.99938 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47154 * 179.97438 * 13 12 10 15 15 H 1.08995 * 109.51031 * 60.00046 * 14 13 12 16 16 C 1.53289 * 109.50860 * 180.10127 * 14 13 12 17 17 N 1.47154 * 108.38116 * 172.22703 * 16 14 13 18 18 C 1.36934 * 120.98193 * 129.48888 * 17 16 14 19 19 H 1.08001 * 120.00205 * 206.22305 * 18 17 16 20 20 C 1.38816 * 120.00213 * 26.22164 * 18 17 16 21 21 N 1.31617 * 119.99694 * 16.91216 * 20 18 17 22 22 Si 1.86799 * 120.00116 * 196.90734 * 20 18 17 23 23 H 1.48501 * 109.46994 * 60.00204 * 22 20 18 24 24 H 1.48496 * 109.47078 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47135 * 300.00084 * 22 20 18 26 26 C 1.47153 * 118.03573 * 309.45935 * 17 16 14 27 27 C 1.53302 * 108.38136 * 50.53991 * 26 17 16 28 28 O 1.42954 * 109.26177 * 307.71914 * 27 26 17 29 29 H 1.08997 * 109.46824 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46722 * 60.00504 * 1 2 3 31 31 H 1.08996 * 109.46881 * 299.99997 * 1 2 3 32 32 H 1.09000 * 109.47147 * 119.99802 * 2 1 3 33 33 H 1.08996 * 109.46881 * 240.00003 * 2 1 3 34 34 H 1.09000 * 109.47099 * 299.99832 * 3 2 1 35 35 H 1.09004 * 109.47326 * 59.99962 * 3 2 1 36 36 H 1.07995 * 126.29766 * 179.79918 * 8 6 5 37 37 H 0.97003 * 120.00502 * 0.02562 * 12 10 9 38 38 H 1.08994 * 109.46846 * 300.00060 * 13 12 10 39 39 H 1.09003 * 109.46729 * 59.99869 * 13 12 10 40 40 H 1.08997 * 109.68390 * 291.94757 * 16 14 13 41 41 H 1.09002 * 109.68405 * 52.47038 * 16 14 13 42 42 H 0.97001 * 119.99919 * 180.02562 * 21 20 18 43 43 H 1.09007 * 109.67879 * 170.25735 * 26 17 16 44 44 H 1.08997 * 109.68795 * 290.77852 * 26 17 16 45 45 H 1.09003 * 109.51075 * 67.61977 * 27 26 17 46 46 H 1.08995 * 109.50930 * 187.77173 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3139 1.4481 1.0546 6 7 5.6513 1.4433 0.6429 7 1 6.4247 1.4437 1.2284 8 6 5.6837 1.4432 -0.6994 9 6 4.3768 1.4427 -1.1442 10 6 3.9305 1.4419 -2.5493 11 8 2.7428 1.4411 -2.8100 12 7 4.8390 1.4421 -3.5448 13 6 4.3956 1.4419 -4.9412 14 6 5.6161 1.4428 -5.8638 15 1 6.2169 0.5535 -5.6737 16 6 5.1531 1.4451 -7.3251 17 7 6.3320 1.6349 -8.1851 18 6 6.5769 0.7973 -9.2404 19 1 7.5876 0.6540 -9.5930 20 6 5.5260 0.1322 -9.8571 21 7 4.2886 0.5393 -9.6688 22 14 5.8680 -1.3405 -10.9542 23 1 6.5482 -2.3985 -10.1648 24 1 4.5868 -1.8676 -11.4888 25 1 6.7409 -0.9257 -12.0816 26 6 7.2397 2.7517 -7.8780 27 6 7.6010 2.6857 -6.3897 28 8 6.4012 2.6116 -5.6159 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 6.5692 1.4431 -1.3175 37 1 5.7865 1.4424 -3.3369 38 1 3.7962 0.5518 -5.1318 39 1 3.7956 2.3317 -5.1319 40 1 4.6762 0.4937 -7.5607 41 1 4.4465 2.2595 -7.4851 42 1 3.5542 0.0744 -10.0994 43 1 8.1446 2.6653 -8.4796 44 1 6.7439 3.6979 -8.0944 45 1 8.2098 1.8013 -6.2017 46 1 8.1595 3.5791 -6.1107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035423953.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:18 Heat of formation + Delta-G solvation = -22.278348 kcal Electronic energy + Delta-G solvation = -27368.098401 eV Core-core repulsion = 23486.623408 eV Total energy + Delta-G solvation = -3881.474993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.42702 -40.49678 -39.66451 -36.50127 -36.20876 -35.60125 -33.24953 -32.76783 -32.54204 -31.13666 -29.01671 -28.07788 -27.11368 -25.07219 -24.14816 -23.17393 -22.82111 -21.60765 -21.16784 -20.53460 -19.43367 -18.84120 -17.52785 -17.44617 -16.97089 -16.63874 -16.24915 -16.08537 -15.99869 -15.50093 -15.41524 -15.31129 -15.14673 -15.00900 -14.54830 -14.44405 -14.17280 -13.92087 -13.62630 -13.13967 -12.96624 -12.88613 -12.62660 -12.50832 -12.44707 -12.17821 -12.16264 -12.09508 -11.97740 -11.83590 -11.55958 -11.28172 -10.89209 -10.72495 -10.52386 -10.50558 -10.14535 -9.72091 -8.73736 -7.89644 -5.37192 0.56156 1.09154 1.47795 1.49914 1.57123 1.80840 2.26290 2.48221 2.50135 2.83421 3.25297 3.45449 3.53517 3.75113 4.05268 4.11400 4.13102 4.19343 4.23141 4.30232 4.37870 4.44949 4.51350 4.55718 4.61158 4.66593 4.71934 4.85416 4.88441 4.90861 5.00466 5.03010 5.10250 5.13366 5.25685 5.34866 5.42483 5.43685 5.50635 5.55798 5.61783 6.28020 6.28680 6.35524 6.49652 6.72869 7.07084 7.37042 7.76404 8.29788 9.15827 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016161 B = 0.002834 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.179681 B = 9877.260333 C =11001.923197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C -0.045 4.045 4 C 0.125 3.875 5 N -0.321 5.321 6 N -0.445 5.445 7 H 0.462 0.538 8 C 0.137 3.863 9 C -0.317 4.317 10 C 0.588 3.412 11 O -0.581 6.581 12 N -0.706 5.706 13 C 0.147 3.853 14 C 0.078 3.922 15 H 0.067 0.933 16 C 0.159 3.841 17 N -0.614 5.614 18 C -0.267 4.267 19 H 0.074 0.926 20 C -0.051 4.051 21 N -0.935 5.935 22 Si 0.970 3.030 23 H -0.275 1.275 24 H -0.296 1.296 25 H -0.275 1.275 26 C 0.100 3.900 27 C 0.058 3.942 28 O -0.388 6.388 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.231 0.769 37 H 0.413 0.587 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.066 0.934 41 H -0.002 1.002 42 H 0.251 0.749 43 H 0.072 0.928 44 H 0.013 0.987 45 H 0.057 0.943 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.528 0.920 21.864 22.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.084 4.084 4 C -0.043 4.043 5 N -0.144 5.144 6 N -0.151 5.151 7 H 0.310 0.690 8 C -0.017 4.017 9 C -0.332 4.332 10 C 0.376 3.624 11 O -0.462 6.462 12 N -0.358 5.358 13 C 0.022 3.978 14 C 0.019 3.981 15 H 0.085 0.915 16 C 0.032 3.968 17 N -0.339 5.339 18 C -0.397 4.397 19 H 0.092 0.908 20 C -0.246 4.246 21 N -0.581 5.581 22 Si 0.798 3.202 23 H -0.200 1.200 24 H -0.223 1.223 25 H -0.201 1.201 26 C -0.025 4.025 27 C -0.020 4.020 28 O -0.307 6.307 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.247 0.753 37 H 0.249 0.751 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.016 0.984 42 H 0.060 0.940 43 H 0.090 0.910 44 H 0.031 0.969 45 H 0.075 0.925 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.566 1.017 22.999 23.470 hybrid contribution 0.620 -0.715 -1.951 2.169 sum 5.187 0.302 21.048 21.680 Atomic orbital electron populations 1.21723 0.94291 1.02254 1.02151 1.21292 0.96910 0.94858 1.01210 1.20183 0.85608 0.98937 1.03665 1.22579 0.97462 0.95108 0.89146 1.77098 0.87607 1.27207 1.22454 1.46128 1.07473 1.55647 1.05856 0.68977 1.23721 0.98987 0.93221 0.85795 1.20253 0.93897 1.25857 0.93225 1.17587 0.85208 0.75122 0.84434 1.90729 1.17954 1.52640 1.84903 1.45540 1.10245 1.75200 1.04786 1.21043 0.95043 1.01902 0.79820 1.22729 0.91965 0.88494 0.94927 0.91522 1.21090 0.88584 0.99938 0.87203 1.44351 1.26805 1.31226 1.31507 1.19515 0.92639 1.19268 1.08246 0.90805 1.25845 0.95405 1.03211 1.00164 1.70178 0.99065 1.41212 1.47610 0.85306 0.76478 0.79712 0.78741 1.20036 1.22252 1.20095 1.21847 0.94356 0.89764 0.96550 1.23074 0.85897 1.02814 0.90177 1.87794 1.36011 1.43165 1.63746 0.91938 0.93239 0.91410 0.91777 0.93642 0.89991 0.89536 0.75316 0.75082 0.90851 0.92573 0.91559 0.98392 0.93974 0.91004 0.96881 0.92519 0.86058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.91 71.98 0.71 -2.07 16 2 C -0.10 -2.32 5.92 30.60 0.18 -2.14 16 3 C -0.04 -1.06 5.25 29.85 0.16 -0.91 16 4 C 0.12 3.05 6.52 43.51 0.28 3.33 16 5 N -0.32 -6.92 12.63 -46.68 -0.59 -7.51 16 6 N -0.45 -5.80 7.29 -56.32 -0.41 -6.21 16 7 H 0.46 2.23 8.96 -213.43 -1.91 0.31 16 8 C 0.14 1.85 11.52 84.28 0.97 2.82 16 9 C -0.32 -7.39 6.13 -20.15 -0.12 -7.52 16 10 C 0.59 17.29 7.81 86.66 0.68 17.97 16 11 O -0.58 -21.61 14.92 -4.03 -0.06 -21.67 16 12 N -0.71 -18.68 5.44 -466.36 -2.54 -21.22 16 13 C 0.15 4.91 5.37 86.38 0.46 5.37 16 14 C 0.08 2.80 2.86 30.69 0.09 2.89 16 15 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 16 C 0.16 7.53 4.73 86.35 0.41 7.94 16 17 N -0.61 -30.14 3.05 -697.53 -2.13 -32.26 16 18 C -0.27 -14.25 9.65 84.03 0.81 -13.44 16 19 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 20 C -0.05 -2.77 4.95 84.86 0.42 -2.35 16 21 N -0.94 -54.89 11.14 21.65 0.24 -54.65 16 22 Si 0.97 43.83 29.59 68.60 2.03 45.86 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 25 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 26 C 0.10 3.93 6.74 86.36 0.58 4.51 16 27 C 0.06 1.72 6.98 72.08 0.50 2.23 16 28 O -0.39 -12.81 10.14 -148.98 -1.51 -14.32 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.08 2.30 6.55 -2.39 -0.02 2.28 16 35 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.23 0.90 7.46 -2.91 -0.02 0.88 16 37 H 0.41 8.12 7.27 -92.71 -0.67 7.44 16 38 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.07 3.53 6.14 -2.39 -0.01 3.52 16 41 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 42 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 43 H 0.07 2.63 7.96 -2.38 -0.02 2.61 16 44 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -75.05 376.23 -0.41 -75.46 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -1.58 Total: 17.89 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: 6.14 Total: 18.63 kcal Atomic # 7 Polarization: -116.43 SS G_CDS: -5.42 Total: -121.86 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -1.57 Total: -35.98 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -75.05 -0.41 -75.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035423953.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.181 kcal (2) G-P(sol) polarization free energy of solvation -75.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds