Wall clock time and date at job start Tue Mar 31 2020 14:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47326 * 2 1 4 4 C 1.52997 * 113.00002 * 179.97438 * 3 2 1 5 5 N 1.46509 * 109.46837 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99703 * 180.02562 * 5 4 3 7 7 O 1.21589 * 120.00263 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99754 * 179.97438 * 6 5 4 9 9 C 1.40193 * 119.99728 * 179.97438 * 8 6 5 10 10 C 1.40401 * 125.97600 * 0.02562 * 9 8 6 11 11 C 1.35244 * 107.86868 * 179.97438 * 10 9 8 12 12 C 1.50696 * 126.07048 * 179.97438 * 11 10 9 13 13 N 1.34965 * 107.85999 * 359.97438 * 11 10 9 14 14 C 1.46493 * 125.97624 * 179.97438 * 13 11 10 15 15 C 1.50690 * 109.47472 * 270.02686 * 14 13 11 16 16 H 1.07996 * 120.00250 * 0.02562 * 15 14 13 17 17 C 1.37883 * 120.00028 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00019 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99839 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47202 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46582 * 120.00143 * 19 17 15 22 22 H 1.48490 * 109.47135 * 240.00032 * 19 17 15 23 23 N 1.31214 * 125.96986 * 179.97438 * 9 8 6 24 24 C 1.54039 * 113.81417 * 311.82375 * 3 2 1 25 25 O 1.44452 * 85.42412 * 91.80563 * 24 3 2 26 26 C 1.44171 * 93.37750 * 24.08891 * 25 24 3 27 27 H 1.09003 * 109.47131 * 300.00362 * 1 2 3 28 28 H 1.09003 * 109.46748 * 60.00144 * 1 2 3 29 29 H 1.08995 * 109.46759 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47552 * 239.99811 * 2 1 3 31 31 H 1.09000 * 109.47020 * 119.99412 * 2 1 3 32 32 H 1.09000 * 109.47022 * 60.00030 * 4 3 2 33 33 H 1.08996 * 109.47225 * 299.99221 * 4 3 2 34 34 H 0.96999 * 119.99737 * 359.97438 * 5 4 3 35 35 H 0.96999 * 119.99686 * 0.02562 * 8 6 5 36 36 H 1.07998 * 126.06449 * 0.02562 * 10 9 8 37 37 H 1.09005 * 109.47188 * 90.02621 * 12 11 10 38 38 H 1.08997 * 109.47424 * 210.02502 * 12 11 10 39 39 H 1.09004 * 109.47111 * 330.02462 * 12 11 10 40 40 H 1.09003 * 109.47262 * 30.03261 * 14 13 11 41 41 H 1.09012 * 109.47086 * 150.02761 * 14 13 11 42 42 H 0.97001 * 119.99800 * 179.97438 * 18 17 15 43 43 H 1.08995 * 113.86560 * 205.91418 * 24 3 2 44 44 H 1.09000 * 113.85949 * 337.62134 * 24 3 2 45 45 H 1.09004 * 113.86783 * 221.76116 * 26 25 24 46 46 H 1.09004 * 113.86567 * 90.06031 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5671 1.5366 0.0006 5 7 3.9695 2.9454 0.0012 6 6 5.2770 3.2727 0.0013 7 8 6.1225 2.3989 0.0014 8 7 5.6471 4.5686 0.0013 9 6 7.0071 4.9091 0.0019 10 6 8.0831 4.0072 0.0021 11 6 9.2280 4.7271 0.0022 12 6 10.6275 4.1683 0.0029 13 7 8.8946 6.0350 0.0015 14 6 9.8308 7.1617 0.0019 15 6 10.1512 7.5482 1.4227 16 1 9.7028 7.0082 2.2435 17 6 11.0179 8.5905 1.6749 18 7 11.5644 9.2478 0.6756 19 14 11.4145 9.0700 3.4363 20 1 10.6757 8.1820 4.3694 21 1 12.8741 8.9291 3.6708 22 1 11.0097 10.4796 3.6687 23 7 7.4968 6.1264 0.0015 24 6 1.3614 2.3422 -1.0502 25 8 0.4264 2.6675 0.0018 26 6 1.3613 2.3422 1.0500 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.9617 1.0460 -0.8891 33 1 3.9610 1.0464 0.8909 34 1 3.2950 3.6424 0.0008 35 1 4.9726 5.2657 0.0016 36 1 8.0096 2.9297 0.0014 37 1 10.9655 4.0336 -1.0246 38 1 11.2948 4.8601 0.5170 39 1 10.6347 3.2070 0.5168 40 1 10.7477 6.8725 -0.5116 41 1 9.3786 8.0100 -0.5122 42 1 12.1737 9.9813 0.8530 43 1 1.9742 3.1843 -1.3715 44 1 0.9187 1.7931 -1.8812 45 1 0.9186 1.7933 1.8811 46 1 1.9741 3.1845 1.3713 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001476352621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:04 Heat of formation + Delta-G solvation = 38.156958 kcal Electronic energy + Delta-G solvation = -26884.270491 eV Core-core repulsion = 23005.416169 eV Total energy + Delta-G solvation = -3878.854322 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.65541 -40.68621 -39.47015 -35.39201 -34.68908 -33.77719 -33.30840 -31.43468 -30.83682 -29.53753 -27.09327 -26.69114 -26.33014 -25.65693 -23.91989 -22.91658 -21.50597 -20.03233 -19.62003 -19.03532 -18.09986 -16.74621 -16.69629 -16.63255 -16.42323 -15.78240 -15.49483 -15.30511 -14.97638 -14.74724 -14.33383 -14.13059 -13.92601 -13.49410 -13.47204 -12.97356 -12.68427 -12.47851 -12.42145 -12.31401 -12.18752 -11.88151 -11.81216 -11.65503 -11.40251 -11.07511 -10.86440 -10.84227 -10.83771 -10.42452 -10.26300 -10.04082 -9.96141 -9.67585 -9.52856 -9.29394 -8.64848 -7.91071 -7.40498 -6.25390 -4.32931 2.32191 2.63961 3.08146 3.20175 3.22549 3.28147 3.34009 3.57643 3.58201 3.83186 4.16788 4.24506 4.31492 4.34855 4.64543 4.83904 4.85503 5.05864 5.05910 5.08145 5.13601 5.30401 5.35108 5.43507 5.50165 5.58578 5.64941 5.69577 5.72569 5.72928 5.92870 5.95189 6.11291 6.16388 6.22717 6.49857 6.55941 6.64073 6.95766 7.04394 7.10903 7.51956 7.67814 7.88923 7.91226 8.07892 8.55197 8.67945 8.76717 9.33479 10.81755 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025377 B = 0.002216 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.117720 B =12629.627344 C =13078.617090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.137 4.137 4 C 0.147 3.853 5 N -0.748 5.748 6 C 0.714 3.286 7 O -0.564 6.564 8 N -0.644 5.644 9 C 0.281 3.719 10 C -0.289 4.289 11 C 0.091 3.909 12 C -0.088 4.088 13 N -0.318 5.318 14 C 0.258 3.742 15 C -0.535 4.535 16 H 0.065 0.935 17 C 0.065 3.935 18 N -0.892 5.892 19 Si 0.906 3.094 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.281 1.281 23 N -0.323 5.323 24 C 0.039 3.961 25 O -0.373 6.373 26 C 0.039 3.961 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.395 0.605 35 H 0.406 0.594 36 H 0.160 0.840 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.267 0.733 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.936 -16.963 -2.764 25.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.135 4.135 3 C -0.138 4.138 4 C 0.023 3.977 5 N -0.406 5.406 6 C 0.413 3.587 7 O -0.439 6.439 8 N -0.293 5.293 9 C 0.028 3.972 10 C -0.320 4.320 11 C -0.040 4.040 12 C -0.147 4.147 13 N -0.100 5.100 14 C 0.141 3.859 15 C -0.574 4.574 16 H 0.083 0.917 17 C -0.139 4.139 18 N -0.530 5.530 19 Si 0.733 3.267 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.207 1.207 23 N -0.154 5.154 24 C -0.038 4.038 25 O -0.292 6.292 26 C -0.038 4.038 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.230 0.770 35 H 0.240 0.760 36 H 0.177 0.823 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.503 -16.197 -2.816 24.752 hybrid contribution -0.093 0.366 0.941 1.014 sum -18.596 -15.831 -1.875 24.494 Atomic orbital electron populations 1.21800 0.94606 1.01248 1.02977 1.21214 0.96699 0.92366 1.03182 1.23992 0.94870 0.98178 0.96769 1.21044 0.92312 0.80979 1.03377 1.45162 1.05465 1.08649 1.81370 1.15582 0.82744 0.82309 0.78097 1.90881 1.49362 1.47573 1.56058 1.41380 1.04898 1.06439 1.76619 1.18652 0.83280 0.92488 1.02793 1.21230 0.88591 1.00906 1.21261 1.21057 0.97030 0.85003 1.00932 1.20372 0.90635 1.01167 1.02494 1.48966 1.02573 1.06029 1.52476 1.19681 0.85422 0.81925 0.98904 1.21371 1.27540 1.16998 0.91442 0.91695 1.24937 0.95319 0.95496 0.98103 1.69928 1.30339 1.21737 1.30953 0.86307 0.78154 0.78503 0.83763 1.19583 1.20646 1.20669 1.77248 0.90541 1.17761 1.29854 1.24159 0.90116 0.96913 0.92570 1.89754 1.32539 1.90341 1.16558 1.24111 0.90134 0.96917 0.92604 0.92184 0.92189 0.92836 0.90790 0.90782 0.90615 0.90610 0.76996 0.75982 0.82256 0.91114 0.89939 0.90637 0.92796 0.93030 0.92322 0.89915 0.88689 0.88712 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 8.63 37.16 0.32 -0.49 16 2 C -0.10 -0.49 5.65 -26.73 -0.15 -0.64 16 3 C -0.14 -0.82 1.38 -153.43 -0.21 -1.03 16 4 C 0.15 1.17 5.32 -4.04 -0.02 1.15 16 5 N -0.75 -7.02 4.71 -65.22 -0.31 -7.32 16 6 C 0.71 10.24 8.53 -86.92 -0.74 9.49 16 7 O -0.56 -10.06 13.47 5.29 0.07 -9.99 16 8 N -0.64 -9.92 5.46 -15.51 -0.08 -10.01 16 9 C 0.28 5.75 8.11 -154.36 -1.25 4.49 16 10 C -0.29 -6.00 9.52 -39.83 -0.38 -6.38 16 11 C 0.09 1.94 6.92 -82.28 -0.57 1.37 16 12 C -0.09 -1.52 9.89 36.00 0.36 -1.16 16 13 N -0.32 -7.58 3.59 -58.33 -0.21 -7.79 16 14 C 0.26 6.64 5.81 -5.20 -0.03 6.61 16 15 C -0.53 -14.75 9.39 -34.44 -0.32 -15.07 16 16 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -25.05 13.29 55.43 0.74 -24.31 16 19 Si 0.91 21.12 29.54 -169.99 -5.02 16.10 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 N -0.32 -7.49 12.59 31.44 0.40 -7.09 16 24 C 0.04 0.25 7.45 37.64 0.28 0.53 16 25 O -0.37 -3.04 10.87 -35.23 -0.38 -3.42 16 26 C 0.04 0.25 7.44 37.64 0.28 0.53 16 27 H 0.06 0.36 6.53 -51.93 -0.34 0.02 16 28 H 0.06 0.36 6.53 -51.93 -0.34 0.02 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.39 2.82 5.85 -40.82 -0.24 2.58 16 35 H 0.41 5.00 8.84 -40.82 -0.36 4.63 16 36 H 0.16 3.25 5.91 -52.49 -0.31 2.94 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.08 1.52 7.71 -51.93 -0.40 1.12 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.05 1.37 7.65 -51.93 -0.40 0.97 16 41 H 0.05 1.41 8.14 -51.92 -0.42 0.99 16 42 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.08 0.50 6.69 -51.93 -0.35 0.15 16 44 H 0.09 0.52 7.33 -51.93 -0.38 0.14 16 45 H 0.09 0.54 7.33 -51.93 -0.38 0.15 16 46 H 0.08 0.51 6.68 -51.93 -0.35 0.17 16 LS Contribution 372.63 15.07 5.62 5.62 Total: -1.00 -33.17 372.63 -8.49 -41.66 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.77 Total: 5.50 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -2.54 Total: 1.06 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.53 Total: -56.53 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.31 Total: -13.41 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.17 -8.49 -41.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476352621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.818 kcal (2) G-P(sol) polarization free energy of solvation -33.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds