Wall clock time and date at job start Tue Mar 31 2020 12:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47169 * 2 1 4 4 H 1.09002 * 109.47122 * 305.00370 * 3 2 1 5 5 C 1.52999 * 109.46921 * 64.99885 * 3 2 1 6 6 C 1.52999 * 109.47099 * 185.00307 * 3 2 1 7 7 H 1.09008 * 109.46860 * 299.99704 * 6 3 2 8 8 C 1.52999 * 109.47579 * 59.99981 * 6 3 2 9 9 N 1.46505 * 109.46971 * 180.02562 * 6 3 2 10 10 C 1.34777 * 119.99725 * 154.99504 * 9 6 3 11 11 O 1.21363 * 120.00411 * 0.02562 * 10 9 6 12 12 C 1.49346 * 119.99974 * 179.72256 * 10 9 6 13 13 O 1.21393 * 119.99573 * 0.28167 * 12 10 9 14 14 N 1.34769 * 120.00168 * 180.27495 * 12 10 9 15 15 C 1.39934 * 119.99876 * 179.97438 * 14 12 10 16 16 C 1.40458 * 125.97962 * 359.72455 * 15 14 12 17 17 C 1.35222 * 107.86588 * 179.86153 * 16 15 14 18 18 N 1.34991 * 107.87463 * 0.38856 * 17 16 15 19 19 C 1.46495 * 125.96767 * 179.72643 * 18 17 16 20 20 C 1.50706 * 109.46989 * 125.00664 * 19 18 17 21 21 H 1.08005 * 119.99364 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00407 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99708 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00182 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47147 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46758 * 120.00094 * 24 22 20 27 27 H 1.48495 * 109.46959 * 240.00292 * 24 22 20 28 28 N 1.31271 * 125.97792 * 180.02562 * 15 14 12 29 29 H 1.08994 * 109.47214 * 59.99980 * 1 2 3 30 30 H 1.09003 * 109.46987 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47188 * 299.99648 * 1 2 3 32 32 H 1.09011 * 109.47020 * 239.99848 * 2 1 3 33 33 H 1.09001 * 109.47395 * 120.00299 * 2 1 3 34 34 H 1.08998 * 109.47026 * 179.97438 * 5 3 2 35 35 H 1.08995 * 109.47658 * 299.99950 * 5 3 2 36 36 H 1.09002 * 109.46828 * 60.00304 * 5 3 2 37 37 H 1.09003 * 109.47063 * 299.99985 * 8 6 3 38 38 H 1.09002 * 109.46828 * 59.99823 * 8 6 3 39 39 H 1.08998 * 109.46936 * 180.02562 * 8 6 3 40 40 H 0.97001 * 119.99790 * 335.00244 * 9 6 3 41 41 H 0.97001 * 120.00353 * 0.02562 * 14 12 10 42 42 H 1.07994 * 126.06778 * 359.97438 * 16 15 14 43 43 H 1.07998 * 126.05913 * 180.14363 * 17 16 15 44 44 H 1.09000 * 109.47489 * 245.00246 * 19 18 17 45 45 H 1.08999 * 109.47462 * 5.00654 * 19 18 17 46 46 H 0.96999 * 120.00000 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5648 1.4443 -0.1258 7 1 3.9994 0.9052 0.7161 8 6 3.9696 0.7603 -1.4331 9 7 4.0532 2.8255 -0.1252 10 6 5.3119 3.0950 0.2742 11 8 6.0409 2.1935 0.6329 12 6 5.8118 4.5023 0.2690 13 8 5.0827 5.4040 -0.0902 14 7 7.0722 4.7712 0.6630 15 6 7.5408 6.0897 0.6576 16 6 6.8111 7.2231 0.2629 17 6 7.6125 8.3029 0.4057 18 7 8.8076 7.8742 0.8642 19 6 9.9709 8.7165 1.1527 20 6 10.4209 8.4825 2.5719 21 1 9.8927 7.7771 3.1964 22 6 11.5067 9.1687 3.0729 23 7 12.1501 10.0271 2.3122 24 14 12.0640 8.8791 4.8322 25 1 11.1800 7.8720 5.4720 26 1 13.4628 8.3807 4.8326 27 1 11.9924 10.1540 5.5902 28 7 8.7410 6.4831 1.0152 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 1.9989 3.1540 1.3076 35 1 0.5489 2.1252 1.3970 36 1 2.0698 1.5874 2.1491 37 1 3.6063 -0.2674 -1.4332 38 1 3.5349 1.2994 -2.2749 39 1 5.0559 0.7612 -1.5224 40 1 3.4705 3.5461 -0.4121 41 1 7.6549 4.0506 0.9497 42 1 5.7904 7.2311 -0.0900 43 1 7.3452 9.3262 0.1874 44 1 10.7810 8.4640 0.4685 45 1 9.7010 9.7648 1.0253 46 1 12.9137 10.5102 2.6647 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086450068.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:03 Heat of formation + Delta-G solvation = -2.853654 kcal Electronic energy + Delta-G solvation = -26447.783234 eV Core-core repulsion = 22567.150559 eV Total energy + Delta-G solvation = -3880.632675 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.13132 -40.31880 -38.89319 -37.72738 -35.20977 -34.22273 -33.35663 -31.07416 -30.86968 -29.77475 -29.42053 -27.05815 -25.49511 -24.88748 -23.23187 -22.45801 -21.13573 -20.76758 -20.21747 -19.60247 -18.26292 -17.06016 -16.61898 -16.48255 -16.16625 -15.78185 -15.48367 -15.21246 -14.81912 -14.45885 -14.35073 -14.13883 -13.97702 -13.66603 -13.61149 -12.98941 -12.90374 -12.55549 -12.42048 -12.30893 -12.22399 -12.03924 -11.90386 -11.82549 -11.54360 -11.16551 -11.06859 -10.99579 -10.91526 -10.86324 -10.54363 -10.28430 -10.03340 -9.58121 -9.52519 -9.50912 -8.65822 -8.23582 -7.58689 -6.26570 -4.31626 1.20488 2.05355 2.66029 3.03093 3.18319 3.21906 3.29626 3.36875 3.66112 3.84555 4.14908 4.29656 4.37572 4.38333 4.47450 4.79272 4.91139 4.98786 5.08924 5.10289 5.14742 5.22840 5.34865 5.42226 5.48068 5.53165 5.56235 5.61613 5.64846 5.70864 5.85356 5.89532 5.98018 6.04519 6.10025 6.31785 6.40716 6.78657 6.91258 7.01622 7.23995 7.36599 7.63016 7.69025 7.84341 7.95246 7.97139 8.53582 8.77376 9.34375 10.82288 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.026781 B = 0.002064 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.262557 B =13561.203550 C =13858.519189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.100 4.100 4 H 0.078 0.922 5 C -0.153 4.153 6 C 0.143 3.857 7 H 0.093 0.907 8 C -0.168 4.168 9 N -0.695 5.695 10 C 0.517 3.483 11 O -0.516 6.516 12 C 0.512 3.488 13 O -0.500 6.500 14 N -0.598 5.598 15 C 0.250 3.750 16 C -0.286 4.286 17 C 0.053 3.947 18 N -0.314 5.314 19 C 0.256 3.744 20 C -0.529 4.529 21 H 0.070 0.930 22 C 0.062 3.938 23 N -0.894 5.894 24 Si 0.908 3.092 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.282 1.282 28 N -0.295 5.295 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.413 0.587 41 H 0.423 0.577 42 H 0.161 0.839 43 H 0.170 0.830 44 H 0.047 0.953 45 H 0.059 0.941 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.195 -16.779 -7.024 28.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.119 4.119 4 H 0.097 0.903 5 C -0.210 4.210 6 C 0.040 3.960 7 H 0.111 0.889 8 C -0.226 4.226 9 N -0.348 5.348 10 C 0.297 3.703 11 O -0.391 6.391 12 C 0.291 3.709 13 O -0.374 6.374 14 N -0.247 5.247 15 C -0.002 4.002 16 C -0.317 4.317 17 C -0.097 4.097 18 N -0.096 5.096 19 C 0.139 3.861 20 C -0.568 4.568 21 H 0.088 0.912 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.735 3.265 25 H -0.195 1.195 26 H -0.207 1.207 27 H -0.208 1.208 28 N -0.126 5.126 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.249 0.751 41 H 0.260 0.740 42 H 0.178 0.822 43 H 0.188 0.812 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.790 -16.958 -6.565 27.620 hybrid contribution -0.249 0.281 0.636 0.739 sum -21.039 -16.677 -5.929 27.494 Atomic orbital electron populations 1.21814 0.95506 1.01719 1.02057 1.21613 0.96190 0.95273 1.02662 1.21469 0.93384 0.97570 0.99428 0.90321 1.21915 1.01615 1.00812 0.96642 1.21165 0.93847 0.81423 0.99609 0.88872 1.22267 1.02590 1.00901 0.96852 1.45796 1.13145 1.10442 1.65445 1.19884 0.83038 0.88781 0.78568 1.90789 1.55561 1.46867 1.45837 1.19961 0.82139 0.89434 0.79331 1.90707 1.55509 1.46264 1.44881 1.42003 1.13135 1.06933 1.62583 1.19017 0.93562 0.84511 1.03148 1.21512 1.03121 0.89458 1.17600 1.22584 0.86747 1.00052 1.00294 1.49167 1.11800 1.03179 1.45478 1.19806 0.80149 0.87824 0.98303 1.21294 1.14329 1.24931 0.96215 0.91191 1.24945 0.95750 0.94629 0.98743 1.69924 1.20733 1.26130 1.36498 0.86266 0.78629 0.78162 0.83429 1.19528 1.20663 1.20754 1.77410 1.16555 0.92667 1.25951 0.92689 0.92693 0.92374 0.91213 0.91590 0.92281 0.92012 0.92423 0.90936 0.92134 0.91795 0.75073 0.73960 0.82170 0.81235 0.93531 0.92358 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.67 37.16 0.36 -0.31 16 2 C -0.12 -0.56 5.19 -26.73 -0.14 -0.70 16 3 C -0.10 -0.55 2.02 -90.62 -0.18 -0.73 16 4 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 5 C -0.15 -0.92 8.79 37.16 0.33 -0.60 16 6 C 0.14 1.06 2.16 -67.93 -0.15 0.92 16 7 H 0.09 0.82 7.58 -51.92 -0.39 0.42 16 8 C -0.17 -1.16 9.14 37.16 0.34 -0.82 16 9 N -0.69 -6.29 4.38 -54.26 -0.24 -6.53 16 10 C 0.52 6.37 7.85 -11.63 -0.09 6.28 16 11 O -0.52 -7.35 16.14 5.49 0.09 -7.26 16 12 C 0.51 7.46 7.85 -11.64 -0.09 7.37 16 13 O -0.50 -7.82 13.60 5.46 0.07 -7.75 16 14 N -0.60 -9.82 5.43 -11.58 -0.06 -9.89 16 15 C 0.25 5.01 8.10 -154.55 -1.25 3.75 16 16 C -0.29 -5.44 9.60 -39.82 -0.38 -5.82 16 17 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 18 N -0.31 -7.19 3.67 -62.56 -0.23 -7.42 16 19 C 0.26 6.44 6.26 -5.19 -0.03 6.40 16 20 C -0.53 -14.65 9.24 -34.44 -0.32 -14.97 16 21 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -25.17 13.29 55.43 0.74 -24.43 16 24 Si 0.91 21.37 29.54 -169.99 -5.02 16.35 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 N -0.29 -6.78 12.42 31.41 0.39 -6.39 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.26 6.56 -51.93 -0.34 -0.08 16 32 H 0.07 0.30 6.18 -51.92 -0.32 -0.02 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.40 7.44 -51.93 -0.39 0.02 16 35 H 0.06 0.32 6.56 -51.93 -0.34 -0.02 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.39 6.32 -51.93 -0.33 0.06 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.41 3.28 7.86 -40.82 -0.32 2.96 16 41 H 0.42 6.40 8.29 -40.82 -0.34 6.06 16 42 H 0.16 2.86 5.91 -52.49 -0.31 2.55 16 43 H 0.17 2.62 8.06 -52.49 -0.42 2.20 16 44 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.06 1.42 8.07 -51.93 -0.42 1.01 16 46 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 382.64 15.07 5.77 5.77 Total: -1.00 -31.49 382.64 -7.25 -38.74 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.85 Total: 5.60 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -1.91 Total: 3.21 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: 0.60 Total: -54.66 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.16 Total: -15.01 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.49 -7.25 -38.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086450068.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.885 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds