Wall clock time and date at job start Tue Mar 31 2020 12:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47169 * 2 1 4 4 H 1.09002 * 109.47122 * 305.00370 * 3 2 1 5 5 C 1.52999 * 109.46921 * 64.99885 * 3 2 1 6 6 C 1.52999 * 109.47099 * 185.00307 * 3 2 1 7 7 H 1.09008 * 109.46860 * 299.99704 * 6 3 2 8 8 C 1.52999 * 109.47579 * 59.99981 * 6 3 2 9 9 N 1.46505 * 109.46971 * 180.02562 * 6 3 2 10 10 C 1.34777 * 119.99725 * 154.99504 * 9 6 3 11 11 O 1.21363 * 120.00411 * 0.02562 * 10 9 6 12 12 C 1.49346 * 119.99974 * 179.72256 * 10 9 6 13 13 O 1.21393 * 119.99573 * 0.28167 * 12 10 9 14 14 N 1.34769 * 120.00168 * 180.27495 * 12 10 9 15 15 C 1.39934 * 119.99876 * 179.97438 * 14 12 10 16 16 C 1.40458 * 125.97962 * 359.72455 * 15 14 12 17 17 C 1.35222 * 107.86588 * 179.86153 * 16 15 14 18 18 N 1.34991 * 107.87463 * 0.38856 * 17 16 15 19 19 C 1.46495 * 125.96767 * 179.72643 * 18 17 16 20 20 C 1.50706 * 109.46989 * 125.00664 * 19 18 17 21 21 H 1.08005 * 119.99364 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00407 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99708 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00182 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47147 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46758 * 120.00094 * 24 22 20 27 27 H 1.48495 * 109.46959 * 240.00292 * 24 22 20 28 28 N 1.31271 * 125.97792 * 180.02562 * 15 14 12 29 29 H 1.08994 * 109.47214 * 59.99980 * 1 2 3 30 30 H 1.09003 * 109.46987 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47188 * 299.99648 * 1 2 3 32 32 H 1.09011 * 109.47020 * 239.99848 * 2 1 3 33 33 H 1.09001 * 109.47395 * 120.00299 * 2 1 3 34 34 H 1.08998 * 109.47026 * 179.97438 * 5 3 2 35 35 H 1.08995 * 109.47658 * 299.99950 * 5 3 2 36 36 H 1.09002 * 109.46828 * 60.00304 * 5 3 2 37 37 H 1.09003 * 109.47063 * 299.99985 * 8 6 3 38 38 H 1.09002 * 109.46828 * 59.99823 * 8 6 3 39 39 H 1.08998 * 109.46936 * 180.02562 * 8 6 3 40 40 H 0.97001 * 119.99790 * 335.00244 * 9 6 3 41 41 H 0.97001 * 120.00353 * 0.02562 * 14 12 10 42 42 H 1.07994 * 126.06778 * 359.97438 * 16 15 14 43 43 H 1.07998 * 126.05913 * 180.14363 * 17 16 15 44 44 H 1.09000 * 109.47489 * 245.00246 * 19 18 17 45 45 H 1.08999 * 109.47462 * 5.00654 * 19 18 17 46 46 H 0.96999 * 120.00000 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5648 1.4443 -0.1258 7 1 3.9994 0.9052 0.7161 8 6 3.9696 0.7603 -1.4331 9 7 4.0532 2.8255 -0.1252 10 6 5.3119 3.0950 0.2742 11 8 6.0409 2.1935 0.6329 12 6 5.8118 4.5023 0.2690 13 8 5.0827 5.4040 -0.0902 14 7 7.0722 4.7712 0.6630 15 6 7.5408 6.0897 0.6576 16 6 6.8111 7.2231 0.2629 17 6 7.6125 8.3029 0.4057 18 7 8.8076 7.8742 0.8642 19 6 9.9709 8.7165 1.1527 20 6 10.4209 8.4825 2.5719 21 1 9.8927 7.7771 3.1964 22 6 11.5067 9.1687 3.0729 23 7 12.1501 10.0271 2.3122 24 14 12.0640 8.8791 4.8322 25 1 11.1800 7.8720 5.4720 26 1 13.4628 8.3807 4.8326 27 1 11.9924 10.1540 5.5902 28 7 8.7410 6.4831 1.0152 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 1.9989 3.1540 1.3076 35 1 0.5489 2.1252 1.3970 36 1 2.0698 1.5874 2.1491 37 1 3.6063 -0.2674 -1.4332 38 1 3.5349 1.2994 -2.2749 39 1 5.0559 0.7612 -1.5224 40 1 3.4705 3.5461 -0.4121 41 1 7.6549 4.0506 0.9497 42 1 5.7904 7.2311 -0.0900 43 1 7.3452 9.3262 0.1874 44 1 10.7810 8.4640 0.4685 45 1 9.7010 9.7648 1.0253 46 1 12.9137 10.5102 2.6647 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086450068.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:02 Heat of formation + Delta-G solvation = -22.902172 kcal Electronic energy + Delta-G solvation = -26448.652603 eV Core-core repulsion = 22567.150559 eV Total energy + Delta-G solvation = -3881.502044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.46272 -41.59966 -39.97330 -38.50927 -36.53553 -35.41754 -34.92711 -32.84066 -31.55667 -31.02563 -30.23167 -28.82988 -26.76990 -25.36450 -24.82985 -23.49755 -22.41738 -21.74151 -21.36219 -20.72808 -19.36232 -18.71566 -18.26349 -17.81408 -17.24118 -16.91705 -16.78469 -16.23686 -15.87771 -15.82441 -15.55614 -15.16553 -14.91848 -14.60560 -14.50019 -14.24548 -14.15016 -13.87852 -13.72309 -13.48633 -13.05634 -12.98430 -12.81295 -12.67603 -12.63670 -12.50741 -12.33334 -12.30157 -12.14472 -11.68808 -11.59386 -11.47238 -11.42786 -11.35569 -10.76719 -10.72646 -10.33084 -9.84087 -9.22307 -8.34640 -6.48011 0.05020 0.86610 1.13644 1.36265 1.38437 1.50977 1.74543 1.84607 2.25988 2.33517 2.59694 2.97728 3.24539 3.62257 3.90409 3.90941 3.99344 4.21813 4.33876 4.36764 4.51951 4.62998 4.65259 4.73799 4.76227 4.82887 4.83417 4.87736 4.91743 4.95718 5.02536 5.08013 5.10065 5.19803 5.21846 5.31879 5.36731 5.51258 5.55585 5.56946 5.74597 5.78050 5.86497 6.17046 6.25188 6.56918 6.63673 6.80470 6.96025 7.22015 8.73414 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.026781 B = 0.002064 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.262557 B =13561.203550 C =13858.519189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.091 4.091 4 H 0.091 0.909 5 C -0.153 4.153 6 C 0.141 3.859 7 H 0.080 0.920 8 C -0.165 4.165 9 N -0.676 5.676 10 C 0.524 3.476 11 O -0.537 6.537 12 C 0.516 3.484 13 O -0.507 6.507 14 N -0.601 5.601 15 C 0.258 3.742 16 C -0.288 4.288 17 C 0.061 3.939 18 N -0.339 5.339 19 C 0.270 3.730 20 C -0.548 4.548 21 H 0.051 0.949 22 C 0.020 3.980 23 N -0.919 5.919 24 Si 0.970 3.030 25 H -0.276 1.276 26 H -0.274 1.274 27 H -0.269 1.269 28 N -0.342 5.342 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.049 0.951 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.042 0.958 40 H 0.420 0.580 41 H 0.427 0.573 42 H 0.177 0.823 43 H 0.208 0.792 44 H 0.023 0.977 45 H 0.064 0.936 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.184 -17.380 -7.182 30.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.110 4.110 4 H 0.109 0.891 5 C -0.211 4.211 6 C 0.038 3.962 7 H 0.098 0.902 8 C -0.223 4.223 9 N -0.329 5.329 10 C 0.304 3.696 11 O -0.414 6.414 12 C 0.297 3.703 13 O -0.380 6.380 14 N -0.251 5.251 15 C 0.004 3.996 16 C -0.318 4.318 17 C -0.088 4.088 18 N -0.121 5.121 19 C 0.152 3.848 20 C -0.586 4.586 21 H 0.069 0.931 22 C -0.181 4.181 23 N -0.558 5.558 24 Si 0.795 3.205 25 H -0.201 1.201 26 H -0.199 1.199 27 H -0.194 1.194 28 N -0.173 5.173 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.259 0.741 41 H 0.265 0.735 42 H 0.194 0.806 43 H 0.224 0.776 44 H 0.041 0.959 45 H 0.082 0.918 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.835 -17.572 -6.748 29.592 hybrid contribution 0.219 0.396 0.615 0.764 sum -22.616 -17.175 -6.133 29.053 Atomic orbital electron populations 1.21808 0.95021 1.02030 1.02172 1.21610 0.96544 0.94516 1.02908 1.21430 0.91608 0.98386 0.99552 0.89110 1.21925 1.02280 1.00174 0.96683 1.21348 0.95164 0.80049 0.99628 0.90153 1.22248 1.01263 1.02136 0.96620 1.45824 1.11827 1.11661 1.63564 1.19451 0.83896 0.87225 0.79070 1.90792 1.56373 1.46872 1.47368 1.20415 0.81269 0.90473 0.78169 1.90683 1.55510 1.46913 1.44906 1.42132 1.13979 1.05792 1.63168 1.19340 0.92852 0.86142 1.01293 1.21754 1.03617 0.88986 1.17471 1.23258 0.85221 1.01957 0.98350 1.48909 1.12364 1.03232 1.47632 1.19400 0.80596 0.88326 0.96489 1.21429 1.14902 1.24912 0.97392 0.93055 1.25708 0.95593 0.94238 1.02558 1.69990 1.21097 1.26577 1.38090 0.85318 0.78094 0.78299 0.78809 1.20088 1.19937 1.19364 1.77322 1.18517 0.93112 1.28389 0.92295 0.92346 0.92533 0.90440 0.91939 0.93124 0.90959 0.93202 0.89109 0.91111 0.93906 0.74149 0.73454 0.80617 0.77578 0.95902 0.91846 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.67 71.98 0.70 -0.29 16 2 C -0.12 -0.85 5.19 30.59 0.16 -0.70 16 3 C -0.09 -0.80 2.02 -10.79 -0.02 -0.83 16 4 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 5 C -0.15 -1.61 8.79 71.98 0.63 -0.98 16 6 C 0.14 1.88 2.16 44.99 0.10 1.98 16 7 H 0.08 1.34 7.58 -2.38 -0.02 1.32 16 8 C -0.16 -1.97 9.14 71.98 0.66 -1.31 16 9 N -0.68 -11.28 4.38 -443.95 -1.94 -13.23 16 10 C 0.52 12.49 7.85 87.24 0.68 13.18 16 11 O -0.54 -15.15 16.14 -3.29 -0.05 -15.20 16 12 C 0.52 14.62 7.85 87.24 0.69 15.31 16 13 O -0.51 -15.10 13.60 -3.38 -0.05 -15.14 16 14 N -0.60 -19.70 5.43 -308.89 -1.68 -21.38 16 15 C 0.26 10.31 8.10 133.40 1.08 11.39 16 16 C -0.29 -10.64 9.60 22.12 0.21 -10.43 16 17 C 0.06 2.29 11.43 83.51 0.95 3.24 16 18 N -0.34 -15.73 3.67 -351.84 -1.29 -17.02 16 19 C 0.27 13.90 6.26 85.64 0.54 14.43 16 20 C -0.55 -30.95 9.24 25.60 0.24 -30.72 16 21 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 22 C 0.02 1.08 5.46 84.65 0.46 1.54 16 23 N -0.92 -51.86 13.29 21.45 0.28 -51.57 16 24 Si 0.97 43.89 29.54 68.60 2.03 45.91 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 N -0.34 -16.10 12.42 -54.54 -0.68 -16.78 16 29 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.06 0.39 6.56 -2.39 -0.02 0.37 16 32 H 0.08 0.46 6.18 -2.38 -0.01 0.44 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.05 0.62 7.44 -2.39 -0.02 0.60 16 35 H 0.07 0.62 6.56 -2.39 -0.02 0.60 16 36 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.09 0.76 6.32 -2.39 -0.02 0.75 16 38 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.42 5.86 7.86 -92.71 -0.73 5.14 16 41 H 0.43 13.13 8.29 -92.71 -0.77 12.36 16 42 H 0.18 5.93 5.91 -2.91 -0.02 5.91 16 43 H 0.21 5.92 8.06 -2.91 -0.02 5.89 16 44 H 0.02 1.26 8.14 -2.39 -0.02 1.25 16 45 H 0.06 3.14 8.07 -2.39 -0.02 3.12 16 46 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -67.77 382.64 3.21 -64.56 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -0.48 Total: 24.03 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 7.07 Total: 15.81 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -5.30 Total: -119.97 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.10 Total: -30.35 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -67.77 3.21 -64.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086450068.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.659 kcal (2) G-P(sol) polarization free energy of solvation -67.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds