Wall clock time and date at job start Tue Mar 31 2020 12:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47018 * 2 1 4 4 H 1.08998 * 109.46825 * 55.00158 * 3 2 1 5 5 C 1.52998 * 109.47194 * 294.99848 * 3 2 1 6 6 C 1.53007 * 109.46928 * 174.99809 * 3 2 1 7 7 H 1.08996 * 109.47042 * 305.00139 * 6 3 2 8 8 C 1.53006 * 109.46788 * 65.00199 * 6 3 2 9 9 N 1.46496 * 109.47003 * 185.00021 * 6 3 2 10 10 C 1.34778 * 120.00123 * 155.00193 * 9 6 3 11 11 O 1.21361 * 119.99633 * 0.02562 * 10 9 6 12 12 C 1.49338 * 120.00273 * 179.97438 * 10 9 6 13 13 O 1.21389 * 119.99925 * 0.02562 * 12 10 9 14 14 N 1.34770 * 120.00038 * 179.97438 * 12 10 9 15 15 C 1.39936 * 119.99877 * 179.97438 * 14 12 10 16 16 C 1.40453 * 125.98062 * 359.97438 * 15 14 12 17 17 C 1.35215 * 107.86384 * 179.73491 * 16 15 14 18 18 N 1.34979 * 107.87970 * 0.42460 * 17 16 15 19 19 C 1.46500 * 125.97555 * 179.83561 * 18 17 16 20 20 C 1.50706 * 109.47299 * 124.71172 * 19 18 17 21 21 H 1.07998 * 119.99503 * 0.02562 * 20 19 18 22 22 C 1.37871 * 120.00434 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99826 * 359.72891 * 22 20 19 24 24 Si 1.86800 * 120.00406 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72576 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72423 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72459 * 24 22 20 28 28 N 1.31273 * 125.97577 * 179.97438 * 15 14 12 29 29 H 1.08998 * 109.47171 * 299.99852 * 1 2 3 30 30 H 1.09006 * 109.46806 * 59.99871 * 1 2 3 31 31 H 1.08992 * 109.47345 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47171 * 240.00148 * 2 1 3 33 33 H 1.08997 * 109.47331 * 119.99975 * 2 1 3 34 34 H 1.08994 * 109.47327 * 180.02562 * 5 3 2 35 35 H 1.09007 * 109.47120 * 300.00397 * 5 3 2 36 36 H 1.08998 * 109.47172 * 60.00392 * 5 3 2 37 37 H 1.08996 * 109.47204 * 299.99903 * 8 6 3 38 38 H 1.08996 * 109.47378 * 60.00146 * 8 6 3 39 39 H 1.08998 * 109.47010 * 180.02562 * 8 6 3 40 40 H 0.96999 * 120.00229 * 335.00011 * 9 6 3 41 41 H 0.96998 * 120.00451 * 0.02562 * 14 12 10 42 42 H 1.07999 * 126.06951 * 0.02562 * 16 15 14 43 43 H 1.08008 * 126.06407 * 180.28204 * 17 16 15 44 44 H 1.09004 * 109.47078 * 4.71934 * 19 18 17 45 45 H 1.08993 * 109.47364 * 244.71705 * 19 18 17 46 46 H 0.97000 * 120.00236 * 0.27947 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5649 1.4444 0.1258 7 1 3.8570 0.8801 1.0113 8 6 4.1798 0.7976 -1.1171 9 7 4.0433 2.8238 0.2459 10 6 5.2190 3.0788 0.8534 11 8 5.8815 2.1656 1.3006 12 6 5.7070 4.4849 0.9753 13 8 5.0445 5.3983 0.5276 14 7 6.8824 4.7400 1.5833 15 6 7.3399 6.0575 1.6971 16 6 6.6798 7.2039 1.2250 17 6 7.4411 8.2778 1.5341 18 7 8.5464 7.8333 2.1688 19 6 9.6409 8.6649 2.6755 20 6 9.8465 8.3858 4.1421 21 1 9.2243 7.6611 4.6462 22 6 10.8287 9.0556 4.8403 23 7 11.5898 9.9342 4.2252 24 14 11.0840 8.7091 6.6581 25 1 10.2405 9.6307 7.4608 26 1 10.7016 7.3048 6.9528 27 1 12.5128 8.9164 7.0057 28 7 8.4612 6.4383 2.2637 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.9989 3.1541 -1.3076 35 1 2.0699 1.5875 -2.1492 36 1 0.5490 2.1253 -1.3969 37 1 3.8238 -0.2287 -1.2064 38 1 3.8876 1.3619 -2.0026 39 1 5.2661 0.7985 -1.0273 40 1 3.5139 3.5536 -0.1119 41 1 7.4117 4.0102 1.9414 42 1 5.7303 7.2245 0.7109 43 1 7.2076 9.3083 1.3106 44 1 9.3917 9.7171 2.5374 45 1 10.5556 8.4336 2.1299 46 1 11.4575 10.1140 3.2812 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086450069.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:05 Heat of formation + Delta-G solvation = -25.249970 kcal Electronic energy + Delta-G solvation = -26464.990879 eV Core-core repulsion = 22583.387027 eV Total energy + Delta-G solvation = -3881.603852 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.54515 -41.67355 -40.05392 -38.63645 -36.68181 -35.71458 -34.95386 -32.77361 -31.66986 -31.10737 -29.57146 -28.52313 -26.87496 -26.08762 -24.94633 -23.58003 -22.56681 -21.85493 -21.16228 -20.44673 -19.44753 -19.22181 -18.30288 -17.82090 -17.27598 -16.77582 -16.74563 -16.30923 -16.01687 -15.68260 -15.64433 -15.33958 -15.17649 -14.97267 -14.54997 -14.23191 -13.99156 -13.92650 -13.79842 -13.27374 -13.20296 -13.09614 -12.93534 -12.75056 -12.66187 -12.60367 -12.17144 -11.99279 -11.93593 -11.70673 -11.66367 -11.49743 -11.35275 -11.04111 -10.81565 -10.69612 -10.36821 -9.93349 -9.31835 -8.79548 -6.56925 -0.00167 0.79828 1.04150 1.49940 1.57576 1.67535 1.73076 1.79225 2.19638 2.45833 2.53066 3.00175 3.19900 3.64724 3.79390 3.85850 3.99037 4.08618 4.31509 4.33894 4.49503 4.50198 4.60316 4.64627 4.68216 4.73019 4.74991 4.75487 4.84582 4.88428 4.94077 5.07257 5.13741 5.20843 5.23618 5.27883 5.28680 5.51811 5.53828 5.58263 5.67813 5.77154 5.89050 6.12215 6.24293 6.39781 6.51705 6.76190 6.85334 7.18100 8.57721 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.027456 B = 0.002054 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.586072 B =13628.413573 C =14038.666565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.093 4.093 4 H 0.077 0.923 5 C -0.157 4.157 6 C 0.141 3.859 7 H 0.082 0.918 8 C -0.166 4.166 9 N -0.677 5.677 10 C 0.524 3.476 11 O -0.536 6.536 12 C 0.516 3.484 13 O -0.507 6.507 14 N -0.601 5.601 15 C 0.260 3.740 16 C -0.285 4.285 17 C 0.060 3.940 18 N -0.339 5.339 19 C 0.258 3.742 20 C -0.623 4.623 21 H 0.044 0.956 22 C -0.018 4.018 23 N -0.922 5.922 24 Si 1.121 2.879 25 H -0.267 1.267 26 H -0.282 1.282 27 H -0.275 1.275 28 N -0.342 5.342 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.041 0.959 40 H 0.419 0.581 41 H 0.428 0.572 42 H 0.179 0.821 43 H 0.208 0.792 44 H 0.059 0.941 45 H 0.018 0.982 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.253 -17.631 -12.427 31.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.112 4.112 4 H 0.095 0.905 5 C -0.214 4.214 6 C 0.038 3.962 7 H 0.100 0.900 8 C -0.223 4.223 9 N -0.331 5.331 10 C 0.303 3.697 11 O -0.413 6.413 12 C 0.297 3.703 13 O -0.380 6.380 14 N -0.251 5.251 15 C 0.006 3.994 16 C -0.315 4.315 17 C -0.088 4.088 18 N -0.121 5.121 19 C 0.138 3.862 20 C -0.661 4.661 21 H 0.062 0.938 22 C -0.218 4.218 23 N -0.558 5.558 24 Si 0.942 3.058 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.200 1.200 28 N -0.173 5.173 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.060 0.940 40 H 0.258 0.742 41 H 0.266 0.734 42 H 0.196 0.804 43 H 0.225 0.775 44 H 0.077 0.923 45 H 0.036 0.964 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.233 -17.551 -10.520 29.488 hybrid contribution -1.063 0.059 -1.666 1.977 sum -22.296 -17.492 -12.186 30.847 Atomic orbital electron populations 1.21812 0.95070 1.02040 1.02134 1.21564 0.96494 0.94523 1.02832 1.21411 0.91551 0.98382 0.99868 0.90504 1.22024 1.02508 1.00190 0.96635 1.21349 0.94853 0.80118 0.99910 0.89999 1.22280 1.00342 1.02258 0.97457 1.45897 1.19608 1.11533 1.56064 1.19447 0.83213 0.87274 0.79754 1.90794 1.56414 1.45976 1.48089 1.20429 0.80687 0.90612 0.78522 1.90681 1.55348 1.46120 1.45830 1.42139 1.21441 1.05446 1.56051 1.19348 0.94032 0.86224 0.99791 1.21775 1.05743 0.88676 1.15355 1.23269 0.87216 1.02034 0.96297 1.48639 1.17887 1.02946 1.42595 1.19481 0.83044 0.88764 0.94872 1.22304 1.22028 1.27152 0.94569 0.93772 1.27235 0.91611 0.92454 1.10488 1.70917 1.39317 1.33107 1.12502 0.82855 0.77179 0.76418 0.69339 1.19213 1.20783 1.20049 1.77344 1.20034 0.92897 1.26986 0.93023 0.91891 0.92307 0.90584 0.91908 0.92793 0.91263 0.91094 0.89285 0.90760 0.94014 0.74182 0.73387 0.80402 0.77518 0.92316 0.96400 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.67 71.98 0.70 -0.33 16 2 C -0.12 -0.85 5.03 30.60 0.15 -0.70 16 3 C -0.09 -0.83 2.32 -10.79 -0.03 -0.86 16 4 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 5 C -0.16 -1.14 8.33 71.98 0.60 -0.54 16 6 C 0.14 1.88 2.35 45.00 0.11 1.99 16 7 H 0.08 1.34 7.58 -2.39 -0.02 1.32 16 8 C -0.17 -1.99 8.75 71.98 0.63 -1.36 16 9 N -0.68 -11.43 5.01 -443.97 -2.22 -13.65 16 10 C 0.52 12.49 7.85 87.23 0.68 13.18 16 11 O -0.54 -15.07 16.14 -3.28 -0.05 -15.12 16 12 C 0.52 14.61 7.85 87.24 0.69 15.30 16 13 O -0.51 -15.05 13.60 -3.37 -0.05 -15.09 16 14 N -0.60 -19.66 5.43 -308.90 -1.68 -21.34 16 15 C 0.26 10.41 8.10 133.40 1.08 11.49 16 16 C -0.28 -10.51 9.60 22.11 0.21 -10.30 16 17 C 0.06 2.25 11.43 83.51 0.95 3.21 16 18 N -0.34 -15.72 3.67 -351.84 -1.29 -17.01 16 19 C 0.26 13.12 5.57 85.64 0.48 13.60 16 20 C -0.62 -35.46 9.24 25.60 0.24 -35.22 16 21 H 0.04 2.65 7.81 -2.91 -0.02 2.63 16 22 C -0.02 -1.01 5.46 84.65 0.46 -0.55 16 23 N -0.92 -53.73 13.65 21.45 0.29 -53.44 16 24 Si 1.12 50.11 29.90 68.60 2.05 52.16 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 27 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 28 N -0.34 -16.15 12.42 -54.54 -0.68 -16.83 16 29 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.06 0.37 6.57 -2.38 -0.02 0.35 16 31 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.08 0.46 6.81 -2.39 -0.02 0.44 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.05 0.43 6.77 -2.39 -0.02 0.41 16 35 H 0.07 0.45 6.35 -2.38 -0.02 0.43 16 36 H 0.07 0.43 6.56 -2.39 -0.02 0.42 16 37 H 0.09 0.76 6.68 -2.39 -0.02 0.75 16 38 H 0.07 0.76 6.34 -2.39 -0.02 0.74 16 39 H 0.04 0.69 8.14 -2.39 -0.02 0.68 16 40 H 0.42 6.01 6.65 -92.71 -0.62 5.40 16 41 H 0.43 13.12 8.29 -92.71 -0.77 12.35 16 42 H 0.18 5.95 5.91 -2.91 -0.02 5.94 16 43 H 0.21 5.89 8.06 -2.91 -0.02 5.87 16 44 H 0.06 2.83 7.94 -2.39 -0.02 2.81 16 45 H 0.02 0.97 8.00 -2.39 -0.02 0.95 16 46 H 0.26 15.03 7.22 -92.71 -0.67 14.36 16 Total: -1.00 -69.97 376.96 3.07 -66.90 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: -0.26 Total: 24.51 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 6.95 Total: 8.91 kcal Atomic # 7 Polarization: -116.70 SS G_CDS: -5.58 Total: -122.27 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.10 Total: -30.21 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 2.05 Total: 52.16 kcal Total: -69.97 3.07 -66.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086450069.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.650 kcal (2) G-P(sol) polarization free energy of solvation -69.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds