Wall clock time and date at job start Tue Mar 31 2020 12:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47097 * 2 1 4 4 H 1.09004 * 109.46757 * 304.99767 * 3 2 1 5 5 C 1.52992 * 109.47346 * 64.99575 * 3 2 1 6 6 C 1.53004 * 109.46854 * 185.00013 * 3 2 1 7 7 H 1.09000 * 109.46736 * 59.99624 * 6 3 2 8 8 C 1.52995 * 109.46935 * 299.99489 * 6 3 2 9 9 N 1.46499 * 109.46671 * 179.97438 * 6 3 2 10 10 C 1.34780 * 119.99728 * 204.99653 * 9 6 3 11 11 O 1.21352 * 119.99966 * 0.02562 * 10 9 6 12 12 C 1.49344 * 119.99631 * 180.02562 * 10 9 6 13 13 O 1.21384 * 120.00528 * 0.02562 * 12 10 9 14 14 N 1.34780 * 119.99631 * 179.97438 * 12 10 9 15 15 C 1.39933 * 119.99692 * 179.97438 * 14 12 10 16 16 C 1.40452 * 125.98297 * 0.02562 * 15 14 12 17 17 C 1.35220 * 107.86988 * 179.97438 * 16 15 14 18 18 N 1.34993 * 107.87218 * 0.02562 * 17 16 15 19 19 C 1.46499 * 125.96709 * 179.97438 * 18 17 16 20 20 C 1.50706 * 109.46731 * 125.02821 * 19 18 17 21 21 H 1.08003 * 120.00216 * 0.02562 * 20 19 18 22 22 C 1.37873 * 119.99953 * 180.02562 * 20 19 18 23 23 N 1.31510 * 120.00084 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00117 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47107 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47604 * 119.99470 * 24 22 20 27 27 H 1.48504 * 109.46987 * 239.99697 * 24 22 20 28 28 N 1.31274 * 125.97830 * 179.97438 * 15 14 12 29 29 H 1.08997 * 109.47197 * 300.00431 * 1 2 3 30 30 H 1.09003 * 109.46773 * 60.00612 * 1 2 3 31 31 H 1.08995 * 109.47241 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47197 * 239.99568 * 2 1 3 33 33 H 1.09003 * 109.46773 * 119.99388 * 2 1 3 34 34 H 1.09001 * 109.47500 * 60.00552 * 5 3 2 35 35 H 1.09003 * 109.47217 * 180.02562 * 5 3 2 36 36 H 1.09002 * 109.47567 * 300.00018 * 5 3 2 37 37 H 1.08995 * 109.47141 * 60.00217 * 8 6 3 38 38 H 1.09000 * 109.46786 * 180.02562 * 8 6 3 39 39 H 1.08998 * 109.47093 * 300.00297 * 8 6 3 40 40 H 0.97004 * 120.00519 * 25.00177 * 9 6 3 41 41 H 0.96995 * 119.99985 * 0.02562 * 14 12 10 42 42 H 1.07998 * 126.06620 * 359.97438 * 16 15 14 43 43 H 1.07999 * 126.06257 * 179.97438 * 17 16 15 44 44 H 1.09000 * 109.47443 * 245.02896 * 19 18 17 45 45 H 1.08998 * 109.47111 * 5.03552 * 19 18 17 46 46 H 0.96999 * 120.00103 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1266 1.3072 6 6 3.5649 1.4443 -0.1257 7 1 3.8532 0.9569 -1.0571 8 6 4.1749 0.6878 1.0559 9 7 4.0531 2.8255 -0.1263 10 6 5.2308 3.1237 -0.7100 11 8 5.8865 2.2481 -1.2355 12 6 5.7288 4.5317 -0.7102 13 8 5.0732 5.4074 -0.1842 14 7 6.9067 4.8297 -1.2934 15 6 7.3731 6.1491 -1.2940 16 6 6.7200 7.2554 -0.7263 17 6 7.4919 8.3456 -0.9364 18 7 8.5922 7.9504 -1.6113 19 6 9.6927 8.8149 -2.0444 20 6 10.9953 8.2735 -1.5141 21 1 11.0027 7.3751 -0.9147 22 6 12.1777 8.9251 -1.7939 23 7 12.1688 10.0189 -2.5241 24 14 13.7923 8.2537 -1.1372 25 1 13.5325 7.0215 -0.3502 26 1 14.6946 7.9351 -2.2728 27 1 14.4336 9.2710 -0.2658 28 7 8.4980 6.5692 -1.8244 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.0698 1.5877 2.1491 35 1 1.9982 3.1544 1.3070 36 1 0.5489 2.1254 1.3968 37 1 3.8115 -0.3399 1.0560 38 1 5.2612 0.6894 0.9666 39 1 3.8865 1.1751 1.9873 40 1 3.5289 3.5255 0.2934 41 1 7.4308 4.1299 -1.7134 42 1 5.7700 7.2384 -0.2129 43 1 7.2674 9.3538 -0.6210 44 1 9.7269 8.8416 -3.1336 45 1 9.5353 9.8230 -1.6610 46 1 13.0007 10.4771 -2.7214 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086450070.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:09 Heat of formation + Delta-G solvation = -0.889216 kcal Electronic energy + Delta-G solvation = -26441.973336 eV Core-core repulsion = 22561.425845 eV Total energy + Delta-G solvation = -3880.547491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -41.13966 -40.33541 -38.94989 -37.81781 -35.20518 -34.19328 -33.35589 -31.08474 -30.94127 -29.42009 -29.20452 -27.07084 -25.88797 -25.28485 -23.27255 -22.52982 -21.20069 -20.40538 -19.95468 -19.53460 -18.30866 -16.96498 -16.61962 -16.52107 -16.08856 -15.88748 -15.65678 -15.29683 -14.88006 -14.61326 -14.37063 -14.14683 -14.05601 -13.78117 -13.22616 -12.96289 -12.70975 -12.62826 -12.50634 -12.42008 -12.30620 -12.21448 -11.89865 -11.60052 -11.40095 -11.21161 -11.07401 -11.05285 -10.87806 -10.86064 -10.54384 -10.28424 -10.03339 -9.58010 -9.53681 -9.50687 -8.65796 -8.23504 -7.58637 -6.26526 -4.31592 1.20397 2.05616 2.65996 3.03119 3.18656 3.21970 3.29702 3.36959 3.66118 3.84851 4.18114 4.29546 4.32882 4.39670 4.45288 4.77718 4.89675 4.96998 5.08191 5.08985 5.12994 5.15357 5.36981 5.42287 5.49565 5.51911 5.56223 5.61431 5.62720 5.70934 5.75572 5.90681 6.02296 6.04071 6.10030 6.31804 6.40785 6.78712 6.91226 7.01680 7.24018 7.36590 7.63005 7.69075 7.84358 7.95252 7.97181 8.53675 8.77442 9.34428 10.82336 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030191 B = 0.002048 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.195864 B =13670.053597 C =14202.567522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.100 4.100 4 H 0.079 0.921 5 C -0.157 4.157 6 C 0.144 3.856 7 H 0.093 0.907 8 C -0.169 4.169 9 N -0.696 5.696 10 C 0.517 3.483 11 O -0.515 6.515 12 C 0.512 3.488 13 O -0.501 6.501 14 N -0.598 5.598 15 C 0.250 3.750 16 C -0.286 4.286 17 C 0.053 3.947 18 N -0.314 5.314 19 C 0.256 3.744 20 C -0.529 4.529 21 H 0.070 0.930 22 C 0.062 3.938 23 N -0.894 5.894 24 Si 0.908 3.092 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.282 1.282 28 N -0.294 5.294 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.412 0.588 41 H 0.423 0.577 42 H 0.161 0.839 43 H 0.170 0.830 44 H 0.047 0.953 45 H 0.059 0.941 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.808 -16.589 6.545 28.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.119 4.119 4 H 0.097 0.903 5 C -0.214 4.214 6 C 0.040 3.960 7 H 0.111 0.889 8 C -0.227 4.227 9 N -0.351 5.351 10 C 0.297 3.703 11 O -0.390 6.390 12 C 0.291 3.709 13 O -0.374 6.374 14 N -0.246 5.246 15 C -0.002 4.002 16 C -0.317 4.317 17 C -0.097 4.097 18 N -0.096 5.096 19 C 0.139 3.861 20 C -0.568 4.568 21 H 0.088 0.912 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.735 3.265 25 H -0.195 1.195 26 H -0.207 1.207 27 H -0.208 1.208 28 N -0.126 5.126 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.250 0.750 41 H 0.260 0.740 42 H 0.178 0.822 43 H 0.188 0.812 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.538 -16.717 5.784 27.871 hybrid contribution 0.339 0.073 0.674 0.758 sum -21.199 -16.644 6.458 27.715 Atomic orbital electron populations 1.21819 0.95518 1.01729 1.02060 1.21580 0.96152 0.95264 1.02594 1.21454 0.93444 0.97587 0.99444 0.90256 1.21997 1.01937 1.00400 0.97034 1.21136 0.93267 0.81111 1.00497 0.88896 1.22297 1.01853 1.00476 0.98099 1.45891 1.20958 1.11295 1.56954 1.19899 0.82383 0.88582 0.79460 1.90785 1.55992 1.48609 1.43650 1.19960 0.81663 0.89216 0.80022 1.90703 1.55918 1.48000 1.42753 1.42004 1.20473 1.07599 1.54571 1.19017 0.94583 0.84648 1.02002 1.21511 1.05408 0.89918 1.14851 1.22584 0.88722 1.00202 0.98173 1.49167 1.16670 1.03971 1.39816 1.19807 0.81870 0.87416 0.96983 1.21293 0.90120 1.11669 1.33695 0.91186 1.24943 0.99531 0.94745 0.94843 1.69922 1.28053 1.17714 1.37598 0.86266 0.82407 0.79053 0.78755 1.19531 1.20659 1.20759 1.77408 1.16813 0.92592 1.25759 0.92367 0.92688 0.92683 0.91610 0.91277 0.91825 0.92521 0.91853 0.91031 0.91887 0.91802 0.74989 0.73954 0.82172 0.81232 0.93536 0.92357 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.67 37.16 0.36 -0.30 16 2 C -0.12 -0.55 4.90 -26.73 -0.13 -0.68 16 3 C -0.10 -0.55 2.38 -90.62 -0.22 -0.76 16 4 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 5 C -0.16 -0.78 8.42 37.15 0.31 -0.46 16 6 C 0.14 1.08 2.40 -67.93 -0.16 0.91 16 7 H 0.09 0.80 7.58 -51.93 -0.39 0.41 16 8 C -0.17 -1.19 8.78 37.16 0.33 -0.87 16 9 N -0.70 -6.45 4.99 -54.27 -0.27 -6.72 16 10 C 0.52 6.43 7.85 -11.63 -0.09 6.34 16 11 O -0.52 -7.39 16.14 5.49 0.09 -7.30 16 12 C 0.51 7.51 7.85 -11.63 -0.09 7.42 16 13 O -0.50 -7.88 13.60 5.47 0.07 -7.80 16 14 N -0.60 -9.85 5.43 -11.58 -0.06 -9.92 16 15 C 0.25 5.01 8.10 -154.55 -1.25 3.76 16 16 C -0.29 -5.45 9.60 -39.82 -0.38 -5.83 16 17 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 18 N -0.31 -7.20 3.67 -62.56 -0.23 -7.43 16 19 C 0.26 6.44 6.26 -5.19 -0.03 6.41 16 20 C -0.53 -14.66 9.23 -34.44 -0.32 -14.98 16 21 H 0.07 2.02 7.81 -52.48 -0.41 1.61 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -25.17 13.29 55.43 0.74 -24.43 16 24 Si 0.91 21.38 29.54 -169.99 -5.02 16.35 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 N -0.29 -6.79 12.42 31.41 0.39 -6.40 16 29 H 0.06 0.24 6.56 -51.93 -0.34 -0.10 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.30 6.71 -51.93 -0.35 -0.05 16 34 H 0.06 0.31 6.43 -51.93 -0.33 -0.03 16 35 H 0.06 0.30 6.51 -51.93 -0.34 -0.04 16 36 H 0.06 0.28 6.57 -51.93 -0.34 -0.06 16 37 H 0.07 0.40 6.54 -51.93 -0.34 0.06 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 40 H 0.41 3.40 6.34 -40.82 -0.26 3.14 16 41 H 0.42 6.41 8.29 -40.82 -0.34 6.07 16 42 H 0.16 2.86 5.91 -52.49 -0.31 2.55 16 43 H 0.17 2.62 8.06 -52.49 -0.42 2.20 16 44 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 46 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 377.71 15.07 5.69 5.69 Total: -1.00 -31.52 377.71 -7.18 -38.70 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.60 Total: 5.85 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -1.97 Total: 3.40 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: 0.56 Total: -54.89 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.16 Total: -15.10 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.52 -7.18 -38.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086450070.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.807 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds