Wall clock time and date at job start Tue Mar 31 2020 12:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47097 * 2 1 4 4 H 1.09004 * 109.46757 * 304.99767 * 3 2 1 5 5 C 1.52992 * 109.47346 * 64.99575 * 3 2 1 6 6 C 1.53004 * 109.46854 * 185.00013 * 3 2 1 7 7 H 1.09000 * 109.46736 * 59.99624 * 6 3 2 8 8 C 1.52995 * 109.46935 * 299.99489 * 6 3 2 9 9 N 1.46499 * 109.46671 * 179.97438 * 6 3 2 10 10 C 1.34780 * 119.99728 * 204.99653 * 9 6 3 11 11 O 1.21352 * 119.99966 * 0.02562 * 10 9 6 12 12 C 1.49344 * 119.99631 * 180.02562 * 10 9 6 13 13 O 1.21384 * 120.00528 * 0.02562 * 12 10 9 14 14 N 1.34780 * 119.99631 * 179.97438 * 12 10 9 15 15 C 1.39933 * 119.99692 * 179.97438 * 14 12 10 16 16 C 1.40452 * 125.98297 * 0.02562 * 15 14 12 17 17 C 1.35220 * 107.86988 * 179.97438 * 16 15 14 18 18 N 1.34993 * 107.87218 * 0.02562 * 17 16 15 19 19 C 1.46499 * 125.96709 * 179.97438 * 18 17 16 20 20 C 1.50706 * 109.46731 * 125.02821 * 19 18 17 21 21 H 1.08003 * 120.00216 * 0.02562 * 20 19 18 22 22 C 1.37873 * 119.99953 * 180.02562 * 20 19 18 23 23 N 1.31510 * 120.00084 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00117 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47107 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47604 * 119.99470 * 24 22 20 27 27 H 1.48504 * 109.46987 * 239.99697 * 24 22 20 28 28 N 1.31274 * 125.97830 * 179.97438 * 15 14 12 29 29 H 1.08997 * 109.47197 * 300.00431 * 1 2 3 30 30 H 1.09003 * 109.46773 * 60.00612 * 1 2 3 31 31 H 1.08995 * 109.47241 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47197 * 239.99568 * 2 1 3 33 33 H 1.09003 * 109.46773 * 119.99388 * 2 1 3 34 34 H 1.09001 * 109.47500 * 60.00552 * 5 3 2 35 35 H 1.09003 * 109.47217 * 180.02562 * 5 3 2 36 36 H 1.09002 * 109.47567 * 300.00018 * 5 3 2 37 37 H 1.08995 * 109.47141 * 60.00217 * 8 6 3 38 38 H 1.09000 * 109.46786 * 180.02562 * 8 6 3 39 39 H 1.08998 * 109.47093 * 300.00297 * 8 6 3 40 40 H 0.97004 * 120.00519 * 25.00177 * 9 6 3 41 41 H 0.96995 * 119.99985 * 0.02562 * 14 12 10 42 42 H 1.07998 * 126.06620 * 359.97438 * 16 15 14 43 43 H 1.07999 * 126.06257 * 179.97438 * 17 16 15 44 44 H 1.09000 * 109.47443 * 245.02896 * 19 18 17 45 45 H 1.08998 * 109.47111 * 5.03552 * 19 18 17 46 46 H 0.96999 * 120.00103 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1266 1.3072 6 6 3.5649 1.4443 -0.1257 7 1 3.8532 0.9569 -1.0571 8 6 4.1749 0.6878 1.0559 9 7 4.0531 2.8255 -0.1263 10 6 5.2308 3.1237 -0.7100 11 8 5.8865 2.2481 -1.2355 12 6 5.7288 4.5317 -0.7102 13 8 5.0732 5.4074 -0.1842 14 7 6.9067 4.8297 -1.2934 15 6 7.3731 6.1491 -1.2940 16 6 6.7200 7.2554 -0.7263 17 6 7.4919 8.3456 -0.9364 18 7 8.5922 7.9504 -1.6113 19 6 9.6927 8.8149 -2.0444 20 6 10.9953 8.2735 -1.5141 21 1 11.0027 7.3751 -0.9147 22 6 12.1777 8.9251 -1.7939 23 7 12.1688 10.0189 -2.5241 24 14 13.7923 8.2537 -1.1372 25 1 13.5325 7.0215 -0.3502 26 1 14.6946 7.9351 -2.2728 27 1 14.4336 9.2710 -0.2658 28 7 8.4980 6.5692 -1.8244 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.0698 1.5877 2.1491 35 1 1.9982 3.1544 1.3070 36 1 0.5489 2.1254 1.3968 37 1 3.8115 -0.3399 1.0560 38 1 5.2612 0.6894 0.9666 39 1 3.8865 1.1751 1.9873 40 1 3.5289 3.5255 0.2934 41 1 7.4308 4.1299 -1.7134 42 1 5.7700 7.2384 -0.2129 43 1 7.2674 9.3538 -0.6210 44 1 9.7269 8.8416 -3.1336 45 1 9.5353 9.8230 -1.6610 46 1 13.0007 10.4771 -2.7214 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086450070.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:08 Heat of formation + Delta-G solvation = -21.185909 kcal Electronic energy + Delta-G solvation = -26442.853466 eV Core-core repulsion = 22561.425845 eV Total energy + Delta-G solvation = -3881.427621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.46924 -41.61670 -40.01506 -38.62360 -36.54120 -35.41369 -34.90235 -32.84201 -31.61001 -31.02688 -29.65599 -28.83192 -26.89926 -26.04486 -24.82525 -23.55408 -22.46704 -21.74472 -21.10687 -20.37928 -19.37178 -18.71124 -18.22856 -17.82406 -17.20732 -16.94469 -16.70681 -16.32560 -16.10508 -15.92986 -15.54646 -15.19940 -15.09623 -14.59415 -14.54968 -14.26650 -13.91032 -13.87976 -13.71044 -13.22437 -13.11030 -13.02392 -12.91755 -12.79663 -12.66944 -12.58036 -12.33278 -12.14847 -11.93754 -11.68098 -11.64193 -11.48404 -11.42950 -11.32097 -10.77896 -10.72852 -10.34649 -9.84230 -9.22484 -8.34615 -6.48006 0.04142 0.86201 1.13353 1.36380 1.38539 1.51083 1.74035 1.84393 2.25409 2.33582 2.59322 2.97788 3.23792 3.66299 3.86622 3.90751 4.00410 4.21683 4.32500 4.34847 4.51351 4.62664 4.66102 4.69374 4.75784 4.83179 4.85278 4.87785 4.92997 4.96140 5.02474 5.08286 5.15442 5.22230 5.24862 5.28784 5.30335 5.55049 5.55619 5.59266 5.74339 5.77756 5.85978 6.16192 6.25025 6.56062 6.63646 6.79313 6.95888 7.22053 8.73454 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030191 B = 0.002048 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.195864 B =13670.053597 C =14202.567522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.092 4.092 4 H 0.077 0.923 5 C -0.157 4.157 6 C 0.141 3.859 7 H 0.082 0.918 8 C -0.166 4.166 9 N -0.678 5.678 10 C 0.524 3.476 11 O -0.536 6.536 12 C 0.516 3.484 13 O -0.507 6.507 14 N -0.601 5.601 15 C 0.257 3.743 16 C -0.288 4.288 17 C 0.061 3.939 18 N -0.339 5.339 19 C 0.270 3.730 20 C -0.548 4.548 21 H 0.051 0.949 22 C 0.020 3.980 23 N -0.919 5.919 24 Si 0.971 3.029 25 H -0.276 1.276 26 H -0.274 1.274 27 H -0.269 1.269 28 N -0.342 5.342 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.040 0.960 39 H 0.072 0.928 40 H 0.419 0.581 41 H 0.427 0.573 42 H 0.177 0.823 43 H 0.208 0.792 44 H 0.023 0.977 45 H 0.064 0.936 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.182 -17.385 7.892 30.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.111 4.111 4 H 0.096 0.904 5 C -0.214 4.214 6 C 0.038 3.962 7 H 0.101 0.899 8 C -0.224 4.224 9 N -0.332 5.332 10 C 0.303 3.697 11 O -0.413 6.413 12 C 0.297 3.703 13 O -0.380 6.380 14 N -0.250 5.250 15 C 0.003 3.997 16 C -0.318 4.318 17 C -0.088 4.088 18 N -0.121 5.121 19 C 0.152 3.848 20 C -0.587 4.587 21 H 0.070 0.930 22 C -0.181 4.181 23 N -0.558 5.558 24 Si 0.795 3.205 25 H -0.201 1.201 26 H -0.199 1.199 27 H -0.194 1.194 28 N -0.173 5.173 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.258 0.742 41 H 0.266 0.734 42 H 0.194 0.806 43 H 0.224 0.776 44 H 0.041 0.959 45 H 0.082 0.918 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.970 -17.524 7.152 29.763 hybrid contribution 0.599 0.255 0.289 0.712 sum -22.371 -17.270 7.441 29.224 Atomic orbital electron populations 1.21813 0.95086 1.02030 1.02131 1.21579 0.96471 0.94523 1.02870 1.21403 0.91536 0.98390 0.99817 0.90433 1.22014 1.02588 1.00135 0.96675 1.21331 0.94766 0.79755 1.00367 0.89943 1.22279 1.00369 1.01639 0.98100 1.45933 1.19548 1.12470 1.55267 1.19475 0.83173 0.87084 0.79985 1.90788 1.56864 1.48610 1.45051 1.20409 0.80774 0.90216 0.78928 1.90680 1.55931 1.48632 1.42802 1.42129 1.21233 1.06466 1.55207 1.19338 0.93703 0.86212 1.00399 1.21753 1.05823 0.89466 1.14795 1.23258 0.87121 1.02048 0.96351 1.48911 1.17396 1.04007 1.41815 1.19402 0.82014 0.87949 0.95442 1.21429 0.91855 1.11336 1.34034 0.93045 1.25707 1.02559 0.94929 0.94893 1.69989 1.29185 1.18458 1.38125 0.85316 0.78503 0.78347 0.78338 1.20092 1.19929 1.19374 1.77321 1.18839 0.93081 1.28068 0.91956 0.92965 0.92314 0.91788 0.90598 0.91399 0.92822 0.90986 0.89213 0.94057 0.90909 0.74157 0.73434 0.80626 0.77568 0.95901 0.91845 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.67 71.98 0.70 -0.31 16 2 C -0.12 -0.85 4.90 30.60 0.15 -0.70 16 3 C -0.09 -0.83 2.38 -10.79 -0.03 -0.86 16 4 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 5 C -0.16 -1.20 8.42 71.98 0.61 -0.59 16 6 C 0.14 1.91 2.40 44.99 0.11 2.02 16 7 H 0.08 1.35 7.58 -2.39 -0.02 1.33 16 8 C -0.17 -2.08 8.78 71.98 0.63 -1.44 16 9 N -0.68 -11.63 4.99 -443.98 -2.22 -13.85 16 10 C 0.52 12.62 7.85 87.24 0.68 13.30 16 11 O -0.54 -15.19 16.14 -3.25 -0.05 -15.24 16 12 C 0.52 14.72 7.85 87.24 0.69 15.41 16 13 O -0.51 -15.22 13.60 -3.35 -0.05 -15.26 16 14 N -0.60 -19.73 5.43 -308.89 -1.68 -21.41 16 15 C 0.26 10.31 8.10 133.40 1.08 11.39 16 16 C -0.29 -10.66 9.60 22.11 0.21 -10.45 16 17 C 0.06 2.29 11.43 83.51 0.95 3.25 16 18 N -0.34 -15.73 3.67 -351.84 -1.29 -17.02 16 19 C 0.27 13.90 6.26 85.64 0.54 14.43 16 20 C -0.55 -30.96 9.23 25.60 0.24 -30.73 16 21 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 22 C 0.02 1.09 5.46 84.65 0.46 1.55 16 23 N -0.92 -51.85 13.29 21.45 0.28 -51.57 16 24 Si 0.97 43.88 29.54 68.60 2.03 45.90 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 N -0.34 -16.09 12.42 -54.54 -0.68 -16.76 16 29 H 0.06 0.36 6.56 -2.39 -0.02 0.35 16 30 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.06 0.35 8.14 -2.39 -0.02 0.34 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.08 0.46 6.71 -2.39 -0.02 0.45 16 34 H 0.07 0.48 6.43 -2.39 -0.02 0.46 16 35 H 0.05 0.45 6.51 -2.39 -0.02 0.43 16 36 H 0.07 0.45 6.57 -2.39 -0.02 0.44 16 37 H 0.09 0.80 6.54 -2.39 -0.02 0.79 16 38 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.07 0.78 6.43 -2.39 -0.02 0.77 16 40 H 0.42 6.16 6.34 -92.71 -0.59 5.57 16 41 H 0.43 13.14 8.29 -92.71 -0.77 12.37 16 42 H 0.18 5.94 5.91 -2.91 -0.02 5.92 16 43 H 0.21 5.92 8.06 -2.91 -0.02 5.90 16 44 H 0.02 1.26 8.14 -2.39 -0.02 1.25 16 45 H 0.06 3.14 8.07 -2.39 -0.02 3.12 16 46 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -67.67 377.71 3.04 -64.63 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: -0.33 Total: 24.31 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 7.02 Total: 16.27 kcal Atomic # 7 Polarization: -115.03 SS G_CDS: -5.58 Total: -120.61 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.10 Total: -30.50 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -67.67 3.04 -64.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086450070.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.445 kcal (2) G-P(sol) polarization free energy of solvation -67.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds