Wall clock time and date at job start Tue Mar 31 2020 12:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47210 * 2 1 4 4 H 1.08998 * 109.47263 * 54.99375 * 3 2 1 5 5 C 1.53005 * 109.46784 * 294.99416 * 3 2 1 6 6 C 1.53002 * 109.47410 * 174.99755 * 3 2 1 7 7 H 1.09000 * 109.46481 * 59.99662 * 6 3 2 8 8 C 1.52995 * 109.46839 * 299.99742 * 6 3 2 9 9 N 1.46491 * 109.47236 * 179.97438 * 6 3 2 10 10 C 1.34778 * 120.00384 * 204.99790 * 9 6 3 11 11 O 1.21362 * 119.99358 * 0.02562 * 10 9 6 12 12 C 1.49335 * 120.00283 * 180.02562 * 10 9 6 13 13 O 1.21384 * 120.00298 * 0.02562 * 12 10 9 14 14 N 1.34780 * 119.99860 * 179.97438 * 12 10 9 15 15 C 1.39933 * 119.99692 * 179.97438 * 14 12 10 16 16 C 1.40452 * 125.98297 * 0.02562 * 15 14 12 17 17 C 1.35220 * 107.86988 * 179.97438 * 16 15 14 18 18 N 1.34993 * 107.87218 * 0.02562 * 17 16 15 19 19 C 1.46498 * 125.96688 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.47005 * 125.00640 * 19 18 17 21 21 H 1.08005 * 119.99843 * 359.97438 * 20 19 18 22 22 C 1.37881 * 120.00298 * 180.02562 * 20 19 18 23 23 N 1.31514 * 119.99383 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00173 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47279 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47483 * 119.99507 * 24 22 20 27 27 H 1.48506 * 109.47113 * 239.99714 * 24 22 20 28 28 N 1.31274 * 125.97830 * 179.97438 * 15 14 12 29 29 H 1.09001 * 109.46735 * 60.00863 * 1 2 3 30 30 H 1.09003 * 109.46905 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47547 * 300.00374 * 1 2 3 32 32 H 1.08998 * 109.47109 * 239.99400 * 2 1 3 33 33 H 1.09005 * 109.46813 * 119.99647 * 2 1 3 34 34 H 1.09003 * 109.47048 * 179.97438 * 5 3 2 35 35 H 1.08998 * 109.47187 * 300.00006 * 5 3 2 36 36 H 1.09002 * 109.46953 * 60.00452 * 5 3 2 37 37 H 1.08998 * 109.47093 * 299.99926 * 8 6 3 38 38 H 1.09003 * 109.47173 * 60.00178 * 8 6 3 39 39 H 1.09002 * 109.46921 * 179.97438 * 8 6 3 40 40 H 0.97004 * 120.00285 * 25.00305 * 9 6 3 41 41 H 0.96995 * 119.99985 * 0.02562 * 14 12 10 42 42 H 1.08001 * 126.07107 * 359.96584 * 16 15 14 43 43 H 1.07999 * 126.06248 * 180.02562 * 17 16 15 44 44 H 1.09001 * 109.46909 * 244.99884 * 19 18 17 45 45 H 1.08996 * 109.47340 * 5.00335 * 19 18 17 46 46 H 0.97003 * 119.99647 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 0.8417 5 6 1.6353 2.1264 -1.3075 6 6 3.5648 1.4443 0.1258 7 1 3.9994 0.9052 -0.7160 8 6 3.9695 0.7604 1.4332 9 7 4.0532 2.8254 0.1252 10 6 5.3119 3.0951 -0.2741 11 8 6.0406 2.1936 -0.6335 12 6 5.8099 4.5029 -0.2741 13 8 5.0812 5.4045 0.0858 14 7 7.0688 4.7724 -0.6729 15 6 7.5353 6.0917 -0.6735 16 6 6.8034 7.2259 -0.2853 17 6 7.6044 8.3058 -0.4290 18 7 8.7984 7.8774 -0.8906 19 6 9.9595 8.7206 -1.1860 20 6 11.1545 8.2165 -0.4188 21 1 11.0587 7.3545 0.2248 22 6 12.3701 8.8563 -0.5376 23 7 12.4867 9.9062 -1.3209 24 14 13.8512 8.2318 0.4140 25 1 13.4593 7.0462 1.2177 26 1 14.9265 7.8519 -0.5372 27 1 14.3453 9.3011 1.3183 28 7 8.7338 6.4858 -1.0360 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.9983 3.1542 -1.3073 35 1 2.0700 1.5873 -2.1492 36 1 0.5490 2.1251 -1.3971 37 1 3.5348 1.2995 2.2749 38 1 3.6062 -0.2673 1.4332 39 1 5.0558 0.7613 1.5226 40 1 3.4706 3.5460 0.4122 41 1 7.6513 4.0519 -0.9602 42 1 5.7820 7.2342 0.0655 43 1 7.3364 9.3294 -0.2128 44 1 10.1722 8.6847 -2.2544 45 1 9.7463 9.7484 -0.8923 46 1 13.3419 10.3562 -1.4048 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086450071.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:13 Heat of formation + Delta-G solvation = -2.848547 kcal Electronic energy + Delta-G solvation = -26442.547829 eV Core-core repulsion = 22561.915375 eV Total energy + Delta-G solvation = -3880.632454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.13215 -40.31953 -38.89476 -37.72893 -35.21004 -34.22355 -33.35655 -31.07372 -30.86847 -29.77748 -29.42022 -27.05830 -25.49524 -24.88966 -23.23198 -22.45823 -21.13564 -20.76847 -20.21787 -19.60304 -18.26334 -17.05883 -16.62409 -16.48555 -16.14904 -15.80584 -15.46949 -15.19965 -14.84529 -14.49341 -14.29254 -14.14562 -13.97847 -13.67805 -13.61137 -12.98149 -12.90844 -12.55848 -12.42081 -12.30838 -12.22337 -12.04266 -11.91794 -11.80461 -11.55107 -11.17007 -11.06636 -10.99837 -10.91650 -10.86252 -10.54371 -10.28414 -10.03276 -9.57574 -9.53549 -9.50353 -8.65797 -8.23542 -7.58669 -6.26611 -4.31620 1.20484 2.05399 2.65992 3.03161 3.18381 3.21928 3.29656 3.36909 3.66130 3.84610 4.14785 4.29681 4.37437 4.38214 4.47306 4.79176 4.91234 4.98814 5.08913 5.10044 5.14377 5.22623 5.35012 5.42247 5.48164 5.52783 5.55889 5.61411 5.64503 5.70907 5.85466 5.89362 5.97783 6.04627 6.10052 6.31791 6.40759 6.78688 6.91233 7.01634 7.24019 7.36592 7.63035 7.69046 7.84358 7.95265 7.97132 8.53647 8.77394 9.34353 10.82255 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030245 B = 0.002061 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.543203 B =13579.750579 C =14168.872798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.100 4.100 4 H 0.078 0.922 5 C -0.152 4.152 6 C 0.144 3.856 7 H 0.093 0.907 8 C -0.168 4.168 9 N -0.695 5.695 10 C 0.517 3.483 11 O -0.515 6.515 12 C 0.512 3.488 13 O -0.500 6.500 14 N -0.598 5.598 15 C 0.250 3.750 16 C -0.286 4.286 17 C 0.053 3.947 18 N -0.314 5.314 19 C 0.257 3.743 20 C -0.529 4.529 21 H 0.070 0.930 22 C 0.062 3.938 23 N -0.894 5.894 24 Si 0.908 3.092 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.282 1.282 28 N -0.294 5.294 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.413 0.587 41 H 0.423 0.577 42 H 0.161 0.839 43 H 0.170 0.830 44 H 0.047 0.953 45 H 0.059 0.941 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.559 -16.286 3.008 28.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.119 4.119 4 H 0.097 0.903 5 C -0.210 4.210 6 C 0.040 3.960 7 H 0.111 0.889 8 C -0.226 4.226 9 N -0.348 5.348 10 C 0.297 3.703 11 O -0.391 6.391 12 C 0.291 3.709 13 O -0.374 6.374 14 N -0.247 5.247 15 C -0.002 4.002 16 C -0.317 4.317 17 C -0.097 4.097 18 N -0.096 5.096 19 C 0.139 3.861 20 C -0.568 4.568 21 H 0.088 0.912 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.735 3.265 25 H -0.195 1.195 26 H -0.207 1.207 27 H -0.208 1.208 28 N -0.126 5.126 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.249 0.751 41 H 0.260 0.740 42 H 0.178 0.822 43 H 0.188 0.812 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.181 -16.455 2.471 27.728 hybrid contribution 0.220 0.111 0.746 0.786 sum -21.960 -16.344 3.217 27.563 Atomic orbital electron populations 1.21816 0.95506 1.01719 1.02051 1.21611 0.96187 0.95274 1.02667 1.21469 0.93391 0.97573 0.99424 0.90316 1.21915 1.01609 1.00791 0.96643 1.21159 0.93835 0.81424 0.99610 0.88875 1.22270 1.02618 1.00900 0.96857 1.45795 1.13121 1.10444 1.65469 1.19882 0.83024 0.88788 0.78580 1.90788 1.55534 1.46881 1.45849 1.19958 0.82143 0.89436 0.79323 1.90705 1.55482 1.46301 1.44863 1.42005 1.13272 1.06875 1.62509 1.19016 0.93324 0.84493 1.03410 1.21511 1.03163 0.89428 1.17582 1.22585 0.86633 1.00128 1.00341 1.49167 1.11436 1.03124 1.45896 1.19805 0.80005 0.87938 0.98325 1.21293 0.93268 1.14763 1.27455 0.91188 1.24946 0.99002 0.94713 0.95410 1.69927 1.25926 1.19877 1.37552 0.86264 0.81714 0.78895 0.79597 1.19531 1.20658 1.20759 1.77408 1.16011 0.92552 1.26609 0.92382 0.92692 0.92685 0.91593 0.91206 0.92291 0.92427 0.92024 0.92124 0.90937 0.91781 0.75075 0.73962 0.82171 0.81235 0.93537 0.92359 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.67 37.16 0.36 -0.30 16 2 C -0.12 -0.56 5.19 -26.73 -0.14 -0.70 16 3 C -0.10 -0.54 2.02 -90.62 -0.18 -0.72 16 4 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 5 C -0.15 -0.90 8.79 37.16 0.33 -0.57 16 6 C 0.14 1.07 2.16 -67.94 -0.15 0.92 16 7 H 0.09 0.81 7.58 -51.93 -0.39 0.42 16 8 C -0.17 -1.18 9.14 37.16 0.34 -0.84 16 9 N -0.69 -6.29 4.38 -54.28 -0.24 -6.53 16 10 C 0.52 6.37 7.85 -11.64 -0.09 6.28 16 11 O -0.52 -7.35 16.14 5.49 0.09 -7.26 16 12 C 0.51 7.46 7.85 -11.64 -0.09 7.37 16 13 O -0.50 -7.82 13.60 5.47 0.07 -7.74 16 14 N -0.60 -9.82 5.43 -11.58 -0.06 -9.89 16 15 C 0.25 5.01 8.10 -154.55 -1.25 3.75 16 16 C -0.29 -5.44 9.60 -39.82 -0.38 -5.82 16 17 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 18 N -0.31 -7.19 3.67 -62.56 -0.23 -7.42 16 19 C 0.26 6.44 6.26 -5.20 -0.03 6.41 16 20 C -0.53 -14.66 9.23 -34.44 -0.32 -14.98 16 21 H 0.07 2.02 7.81 -52.48 -0.41 1.61 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -25.16 13.29 55.43 0.74 -24.43 16 24 Si 0.91 21.37 29.54 -169.99 -5.02 16.35 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 28 N -0.29 -6.78 12.42 31.41 0.39 -6.39 16 29 H 0.06 0.25 6.57 -51.93 -0.34 -0.09 16 30 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.30 6.17 -51.93 -0.32 -0.02 16 34 H 0.06 0.39 7.44 -51.93 -0.39 0.00 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.31 6.57 -51.93 -0.34 -0.03 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.40 6.32 -51.93 -0.33 0.07 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.41 3.28 7.86 -40.82 -0.32 2.96 16 41 H 0.42 6.40 8.29 -40.82 -0.34 6.06 16 42 H 0.16 2.86 5.91 -52.49 -0.31 2.55 16 43 H 0.17 2.62 8.06 -52.49 -0.42 2.20 16 44 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.06 1.42 8.07 -51.93 -0.42 1.01 16 46 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 382.63 15.07 5.77 5.77 Total: -1.00 -31.49 382.63 -7.25 -38.74 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.85 Total: 5.58 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -1.91 Total: 3.22 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: 0.60 Total: -54.66 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.16 Total: -15.00 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.49 -7.25 -38.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086450071.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.894 kcal (2) G-P(sol) polarization free energy of solvation -31.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds