Wall clock time and date at job start Tue Mar 31 2020 12:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47210 * 2 1 4 4 H 1.08998 * 109.47263 * 54.99375 * 3 2 1 5 5 C 1.53005 * 109.46784 * 294.99416 * 3 2 1 6 6 C 1.53002 * 109.47410 * 174.99755 * 3 2 1 7 7 H 1.09000 * 109.46481 * 59.99662 * 6 3 2 8 8 C 1.52995 * 109.46839 * 299.99742 * 6 3 2 9 9 N 1.46491 * 109.47236 * 179.97438 * 6 3 2 10 10 C 1.34778 * 120.00384 * 204.99790 * 9 6 3 11 11 O 1.21362 * 119.99358 * 0.02562 * 10 9 6 12 12 C 1.49335 * 120.00283 * 180.02562 * 10 9 6 13 13 O 1.21384 * 120.00298 * 0.02562 * 12 10 9 14 14 N 1.34780 * 119.99860 * 179.97438 * 12 10 9 15 15 C 1.39933 * 119.99692 * 179.97438 * 14 12 10 16 16 C 1.40452 * 125.98297 * 0.02562 * 15 14 12 17 17 C 1.35220 * 107.86988 * 179.97438 * 16 15 14 18 18 N 1.34993 * 107.87218 * 0.02562 * 17 16 15 19 19 C 1.46498 * 125.96688 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.47005 * 125.00640 * 19 18 17 21 21 H 1.08005 * 119.99843 * 359.97438 * 20 19 18 22 22 C 1.37881 * 120.00298 * 180.02562 * 20 19 18 23 23 N 1.31514 * 119.99383 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00173 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47279 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47483 * 119.99507 * 24 22 20 27 27 H 1.48506 * 109.47113 * 239.99714 * 24 22 20 28 28 N 1.31274 * 125.97830 * 179.97438 * 15 14 12 29 29 H 1.09001 * 109.46735 * 60.00863 * 1 2 3 30 30 H 1.09003 * 109.46905 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47547 * 300.00374 * 1 2 3 32 32 H 1.08998 * 109.47109 * 239.99400 * 2 1 3 33 33 H 1.09005 * 109.46813 * 119.99647 * 2 1 3 34 34 H 1.09003 * 109.47048 * 179.97438 * 5 3 2 35 35 H 1.08998 * 109.47187 * 300.00006 * 5 3 2 36 36 H 1.09002 * 109.46953 * 60.00452 * 5 3 2 37 37 H 1.08998 * 109.47093 * 299.99926 * 8 6 3 38 38 H 1.09003 * 109.47173 * 60.00178 * 8 6 3 39 39 H 1.09002 * 109.46921 * 179.97438 * 8 6 3 40 40 H 0.97004 * 120.00285 * 25.00305 * 9 6 3 41 41 H 0.96995 * 119.99985 * 0.02562 * 14 12 10 42 42 H 1.08001 * 126.07107 * 359.96584 * 16 15 14 43 43 H 1.07999 * 126.06248 * 180.02562 * 17 16 15 44 44 H 1.09001 * 109.46909 * 244.99884 * 19 18 17 45 45 H 1.08996 * 109.47340 * 5.00335 * 19 18 17 46 46 H 0.97003 * 119.99647 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 0.8417 5 6 1.6353 2.1264 -1.3075 6 6 3.5648 1.4443 0.1258 7 1 3.9994 0.9052 -0.7160 8 6 3.9695 0.7604 1.4332 9 7 4.0532 2.8254 0.1252 10 6 5.3119 3.0951 -0.2741 11 8 6.0406 2.1936 -0.6335 12 6 5.8099 4.5029 -0.2741 13 8 5.0812 5.4045 0.0858 14 7 7.0688 4.7724 -0.6729 15 6 7.5353 6.0917 -0.6735 16 6 6.8034 7.2259 -0.2853 17 6 7.6044 8.3058 -0.4290 18 7 8.7984 7.8774 -0.8906 19 6 9.9595 8.7206 -1.1860 20 6 11.1545 8.2165 -0.4188 21 1 11.0587 7.3545 0.2248 22 6 12.3701 8.8563 -0.5376 23 7 12.4867 9.9062 -1.3209 24 14 13.8512 8.2318 0.4140 25 1 13.4593 7.0462 1.2177 26 1 14.9265 7.8519 -0.5372 27 1 14.3453 9.3011 1.3183 28 7 8.7338 6.4858 -1.0360 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.9983 3.1542 -1.3073 35 1 2.0700 1.5873 -2.1492 36 1 0.5490 2.1251 -1.3971 37 1 3.5348 1.2995 2.2749 38 1 3.6062 -0.2673 1.4332 39 1 5.0558 0.7613 1.5226 40 1 3.4706 3.5460 0.4122 41 1 7.6513 4.0519 -0.9602 42 1 5.7820 7.2342 0.0655 43 1 7.3364 9.3294 -0.2128 44 1 10.1722 8.6847 -2.2544 45 1 9.7463 9.7484 -0.8923 46 1 13.3419 10.3562 -1.4048 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086450071.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:12 Heat of formation + Delta-G solvation = -22.897146 kcal Electronic energy + Delta-G solvation = -26443.417201 eV Core-core repulsion = 22561.915375 eV Total energy + Delta-G solvation = -3881.501826 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.46339 -41.60076 -39.97461 -38.50942 -36.53551 -35.41730 -34.92700 -32.84032 -31.55784 -31.02541 -30.22913 -28.83005 -26.77075 -25.36314 -24.82966 -23.49790 -22.41748 -21.74146 -21.36204 -20.72771 -19.36244 -18.71395 -18.26451 -17.81784 -17.22696 -16.93325 -16.79036 -16.15952 -15.99119 -15.82908 -15.47244 -15.20072 -14.91593 -14.59513 -14.50906 -14.25110 -14.14410 -13.87840 -13.72147 -13.49003 -13.04155 -12.99680 -12.81109 -12.67709 -12.63380 -12.50766 -12.33211 -12.30457 -12.14217 -11.68580 -11.59380 -11.47172 -11.42762 -11.35477 -10.76677 -10.72668 -10.33128 -9.84061 -9.22288 -8.34659 -6.48000 0.05007 0.86659 1.13583 1.36370 1.38517 1.51077 1.74591 1.84646 2.25999 2.33600 2.59722 2.97748 3.24539 3.62294 3.90502 3.90970 3.99510 4.21830 4.33759 4.36731 4.51926 4.63024 4.65558 4.73806 4.76253 4.82999 4.83433 4.87739 4.91568 4.95674 5.02561 5.08176 5.10248 5.19943 5.21853 5.31929 5.36687 5.51390 5.55616 5.57088 5.74591 5.78062 5.86507 6.17037 6.25172 6.56924 6.63686 6.80462 6.96087 7.22013 8.73409 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030245 B = 0.002061 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.543203 B =13579.750579 C =14168.872798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.091 4.091 4 H 0.090 0.910 5 C -0.153 4.153 6 C 0.141 3.859 7 H 0.081 0.919 8 C -0.165 4.165 9 N -0.676 5.676 10 C 0.524 3.476 11 O -0.537 6.537 12 C 0.516 3.484 13 O -0.507 6.507 14 N -0.601 5.601 15 C 0.258 3.742 16 C -0.287 4.287 17 C 0.061 3.939 18 N -0.339 5.339 19 C 0.271 3.729 20 C -0.548 4.548 21 H 0.051 0.949 22 C 0.020 3.980 23 N -0.919 5.919 24 Si 0.971 3.029 25 H -0.276 1.276 26 H -0.274 1.274 27 H -0.269 1.269 28 N -0.342 5.342 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.041 0.959 40 H 0.420 0.580 41 H 0.427 0.573 42 H 0.177 0.823 43 H 0.207 0.793 44 H 0.023 0.977 45 H 0.064 0.936 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.187 -17.014 4.205 30.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.110 4.110 4 H 0.108 0.892 5 C -0.210 4.210 6 C 0.038 3.962 7 H 0.099 0.901 8 C -0.223 4.223 9 N -0.329 5.329 10 C 0.304 3.696 11 O -0.414 6.414 12 C 0.297 3.703 13 O -0.380 6.380 14 N -0.251 5.251 15 C 0.004 3.996 16 C -0.318 4.318 17 C -0.088 4.088 18 N -0.121 5.121 19 C 0.152 3.848 20 C -0.587 4.587 21 H 0.070 0.930 22 C -0.181 4.181 23 N -0.558 5.558 24 Si 0.795 3.205 25 H -0.201 1.201 26 H -0.199 1.199 27 H -0.194 1.194 28 N -0.173 5.173 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.060 0.940 40 H 0.258 0.742 41 H 0.265 0.735 42 H 0.194 0.806 43 H 0.224 0.776 44 H 0.041 0.959 45 H 0.081 0.919 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -23.870 -17.193 3.680 29.647 hybrid contribution 0.554 0.273 0.378 0.725 sum -23.316 -16.920 4.058 29.093 Atomic orbital electron populations 1.21810 0.95010 1.02027 1.02176 1.21609 0.96551 0.94525 1.02902 1.21430 0.91573 0.98387 0.99595 0.89164 1.21924 1.02284 1.00177 0.96636 1.21342 0.95190 0.80048 0.99582 0.90085 1.22252 1.01234 1.02158 0.96682 1.45822 1.11802 1.11661 1.63591 1.19449 0.83880 0.87232 0.79082 1.90792 1.56345 1.46886 1.47378 1.20411 0.81270 0.90476 0.78162 1.90681 1.55486 1.46949 1.44885 1.42134 1.14119 1.05731 1.63095 1.19338 0.92614 0.86125 1.01552 1.21753 1.03662 0.88956 1.17454 1.23258 0.85098 1.02035 0.98403 1.48909 1.11976 1.03172 1.48079 1.19398 0.80432 0.88452 0.96519 1.21430 0.94879 1.14501 1.27846 0.93049 1.25710 1.01445 0.94798 0.96143 1.69993 1.26892 1.20568 1.38298 0.85314 0.78399 0.78341 0.78439 1.20091 1.19926 1.19376 1.77320 1.17986 0.93010 1.29022 0.92483 0.92355 0.92330 0.91892 0.90507 0.93089 0.93139 0.90963 0.91165 0.89097 0.93965 0.74151 0.73456 0.80617 0.77579 0.95908 0.91852 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.67 71.98 0.70 -0.28 16 2 C -0.12 -0.85 5.19 30.59 0.16 -0.69 16 3 C -0.09 -0.80 2.02 -10.79 -0.02 -0.82 16 4 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 5 C -0.15 -1.55 8.79 71.98 0.63 -0.92 16 6 C 0.14 1.89 2.16 44.99 0.10 1.98 16 7 H 0.08 1.34 7.58 -2.39 -0.02 1.32 16 8 C -0.17 -2.03 9.14 71.98 0.66 -1.37 16 9 N -0.68 -11.28 4.38 -444.00 -1.94 -13.23 16 10 C 0.52 12.49 7.85 87.23 0.68 13.18 16 11 O -0.54 -15.15 16.14 -3.28 -0.05 -15.20 16 12 C 0.52 14.62 7.85 87.23 0.69 15.31 16 13 O -0.51 -15.09 13.60 -3.35 -0.05 -15.13 16 14 N -0.60 -19.70 5.43 -308.90 -1.68 -21.38 16 15 C 0.26 10.31 8.10 133.40 1.08 11.39 16 16 C -0.29 -10.65 9.60 22.11 0.21 -10.43 16 17 C 0.06 2.28 11.43 83.51 0.95 3.24 16 18 N -0.34 -15.73 3.67 -351.85 -1.29 -17.02 16 19 C 0.27 13.90 6.26 85.63 0.54 14.44 16 20 C -0.55 -30.97 9.23 25.60 0.24 -30.73 16 21 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 22 C 0.02 1.08 5.46 84.66 0.46 1.54 16 23 N -0.92 -51.85 13.29 21.45 0.28 -51.57 16 24 Si 0.97 43.88 29.54 68.60 2.03 45.91 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 N -0.34 -16.10 12.42 -54.54 -0.68 -16.78 16 29 H 0.06 0.38 6.57 -2.39 -0.02 0.36 16 30 H 0.06 0.34 8.14 -2.39 -0.02 0.33 16 31 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.08 0.46 6.17 -2.38 -0.01 0.45 16 34 H 0.05 0.60 7.44 -2.39 -0.02 0.58 16 35 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.07 0.59 6.57 -2.39 -0.02 0.58 16 37 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 38 H 0.09 0.79 6.32 -2.39 -0.02 0.77 16 39 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.42 5.86 7.86 -92.71 -0.73 5.13 16 41 H 0.43 13.13 8.29 -92.71 -0.77 12.36 16 42 H 0.18 5.93 5.91 -2.91 -0.02 5.91 16 43 H 0.21 5.92 8.06 -2.91 -0.02 5.89 16 44 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.06 3.14 8.07 -2.39 -0.02 3.12 16 46 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -67.76 382.63 3.21 -64.55 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: -0.48 Total: 24.02 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: 7.07 Total: 15.83 kcal Atomic # 7 Polarization: -114.66 SS G_CDS: -5.31 Total: -119.97 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.10 Total: -30.34 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -67.76 3.21 -64.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086450071.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.653 kcal (2) G-P(sol) polarization free energy of solvation -67.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds