Wall clock time and date at job start Tue Mar 31 2020 13:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47371 * 2 1 4 4 N 1.46499 * 109.47469 * 179.97438 * 3 2 1 5 5 C 1.34779 * 119.99953 * 179.97438 * 4 3 2 6 6 O 1.21278 * 120.00044 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.99770 * 179.97438 * 5 4 3 8 8 C 1.53000 * 109.47052 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47389 * 180.02562 * 8 7 5 10 10 C 1.50696 * 109.47220 * 180.02562 * 9 8 7 11 11 O 1.21290 * 120.00012 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99736 * 179.97438 * 10 9 8 13 13 C 1.40159 * 119.99983 * 179.97438 * 12 10 9 14 14 C 1.40409 * 125.97033 * 0.02562 * 13 12 10 15 15 C 1.35241 * 107.86602 * 179.73843 * 14 13 12 16 16 N 1.34966 * 107.86079 * 0.39163 * 15 14 13 17 17 C 1.46500 * 125.97782 * 179.87198 * 16 15 14 18 18 C 1.50706 * 109.47299 * 124.71059 * 17 16 15 19 19 H 1.07998 * 119.99503 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00434 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 359.72891 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72576 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72423 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72459 * 22 20 18 26 26 N 1.31219 * 125.97718 * 179.97438 * 13 12 10 27 27 H 1.08995 * 109.46728 * 299.99787 * 1 2 3 28 28 H 1.08996 * 109.46597 * 60.00272 * 1 2 3 29 29 H 1.09008 * 109.46892 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47191 * 239.99701 * 2 1 3 31 31 H 1.09003 * 109.47432 * 119.99863 * 2 1 3 32 32 H 1.09001 * 109.47207 * 59.99711 * 3 2 1 33 33 H 1.09003 * 109.46731 * 300.00292 * 3 2 1 34 34 H 0.96996 * 119.99685 * 0.02562 * 4 3 2 35 35 H 1.09001 * 109.46978 * 60.00314 * 7 5 4 36 36 H 1.08996 * 109.47154 * 300.00773 * 7 5 4 37 37 H 1.09002 * 109.46562 * 60.00125 * 8 7 5 38 38 H 1.09003 * 109.47100 * 300.00688 * 8 7 5 39 39 H 1.09001 * 109.46879 * 60.00047 * 9 8 7 40 40 H 1.09006 * 109.47056 * 300.00623 * 9 8 7 41 41 H 0.97003 * 120.00166 * 0.02562 * 12 10 9 42 42 H 1.08002 * 126.06850 * 0.02562 * 14 13 12 43 43 H 1.08003 * 126.07024 * 180.26845 * 15 14 13 44 44 H 1.09004 * 109.47078 * 4.71821 * 17 16 15 45 45 H 1.08993 * 109.47364 * 244.71592 * 17 16 15 46 46 H 0.97000 * 120.00236 * 0.27947 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1789 2.6097 0.0002 6 8 3.5725 3.6600 -0.0002 7 6 5.6859 2.6097 0.0014 8 6 6.1959 4.0522 0.0013 9 6 7.7259 4.0523 0.0019 10 6 8.2282 5.4731 0.0024 11 8 7.4400 6.3949 0.0028 12 7 9.5533 5.7193 0.0035 13 6 10.0205 7.0407 0.0034 14 6 9.2240 8.1971 0.0028 15 6 10.0487 9.2689 0.0088 16 7 11.3193 8.8136 0.0043 17 6 12.5294 9.6394 0.0057 18 6 13.4027 9.2490 1.1702 19 1 13.0879 8.4641 1.8419 20 6 14.6034 9.8939 1.3782 21 7 14.9892 10.8462 0.5572 22 14 15.6862 9.4096 2.8213 23 1 15.3301 10.2323 4.0052 24 1 15.4783 7.9733 3.1359 25 1 17.1107 9.6383 2.4700 26 7 11.2786 7.4135 0.0049 27 1 -0.3632 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9900 0.6025 0.0006 35 1 6.0500 2.0952 -0.8879 36 1 6.0485 2.0965 0.8920 37 1 5.8318 4.5663 0.8909 38 1 5.8332 4.5657 -0.8891 39 1 8.0896 3.5383 -0.8879 40 1 8.0889 3.5385 0.8921 41 1 10.1836 4.9820 0.0036 42 1 8.1444 8.2256 0.0027 43 1 9.7446 10.3052 0.0141 44 1 12.2524 10.6898 0.0954 45 1 13.0751 9.4858 -0.9252 46 1 14.4271 11.0975 -0.1923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117854393.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:51 Heat of formation + Delta-G solvation = -18.884292 kcal Electronic energy + Delta-G solvation = -25286.438213 eV Core-core repulsion = 21405.110398 eV Total energy + Delta-G solvation = -3881.327816 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.74384 -40.10349 -39.28421 -36.33451 -34.93991 -34.41039 -33.64727 -33.06732 -30.98804 -29.40122 -29.17851 -26.69537 -26.03324 -23.58877 -22.73246 -22.14488 -21.25045 -20.52648 -20.25037 -19.54555 -17.52297 -17.17885 -16.75197 -16.60368 -16.59093 -16.24915 -16.00259 -15.24604 -15.07057 -14.45961 -14.25333 -13.81941 -13.79854 -13.72972 -13.40923 -13.19077 -12.95985 -12.75497 -12.45155 -12.33893 -12.24599 -12.07541 -11.81491 -11.71666 -11.68629 -11.45291 -11.14938 -11.02214 -10.80486 -10.43184 -10.18863 -10.17734 -10.01971 -9.57152 -9.49157 -8.99535 -8.57703 -8.18757 -7.50682 -6.58017 -4.32017 2.31680 2.33727 2.64926 2.85164 2.89779 3.36787 3.40711 3.57308 3.68134 3.81114 4.24207 4.35146 4.39686 4.40643 4.52271 4.67247 4.69427 4.73736 5.04598 5.07220 5.09314 5.12687 5.15936 5.18600 5.29347 5.31278 5.45763 5.52844 5.54990 5.65238 5.73566 5.88058 5.99518 6.17087 6.23440 6.43593 6.53177 6.62162 6.75864 7.07875 7.37539 7.49874 7.71927 7.84565 7.88891 8.26343 8.35123 8.55550 8.63041 9.36355 10.79600 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.038470 B = 0.001567 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.673341 B =17869.100954 C =18288.080571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.135 4.135 3 C 0.116 3.884 4 N -0.737 5.737 5 C 0.510 3.490 6 O -0.532 6.532 7 C -0.140 4.140 8 C -0.090 4.090 9 C -0.135 4.135 10 C 0.516 3.484 11 O -0.514 6.514 12 N -0.633 5.633 13 C 0.258 3.742 14 C -0.285 4.285 15 C 0.050 3.950 16 N -0.318 5.318 17 C 0.249 3.751 18 C -0.608 4.608 19 H 0.064 0.936 20 C 0.023 3.977 21 N -0.906 5.906 22 Si 1.080 2.920 23 H -0.286 1.286 24 H -0.287 1.287 25 H -0.282 1.282 26 N -0.303 5.303 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.400 0.600 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.411 0.589 42 H 0.161 0.839 43 H 0.168 0.832 44 H 0.046 0.954 45 H 0.034 0.966 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.966 -23.975 -2.100 33.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.173 4.173 3 C -0.008 4.008 4 N -0.390 5.390 5 C 0.296 3.704 6 O -0.408 6.408 7 C -0.180 4.180 8 C -0.129 4.129 9 C -0.176 4.176 10 C 0.302 3.698 11 O -0.387 6.387 12 N -0.281 5.281 13 C 0.004 3.996 14 C -0.316 4.316 15 C -0.100 4.100 16 N -0.100 5.100 17 C 0.131 3.869 18 C -0.646 4.646 19 H 0.082 0.918 20 C -0.182 4.182 21 N -0.541 5.541 22 Si 0.907 3.093 23 H -0.212 1.212 24 H -0.213 1.213 25 H -0.207 1.207 26 N -0.134 5.134 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.234 0.766 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.246 0.754 42 H 0.179 0.821 43 H 0.185 0.815 44 H 0.064 0.936 45 H 0.052 0.948 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.248 -22.509 -1.360 30.984 hybrid contribution -1.630 -0.864 -0.775 2.001 sum -22.879 -23.373 -2.135 32.777 Atomic orbital electron populations 1.21685 0.94497 1.02217 1.02455 1.21735 0.97100 0.95806 1.02692 1.21406 0.79708 0.97108 1.02548 1.46072 1.07380 1.08838 1.76757 1.20795 0.90467 0.83454 0.75648 1.90757 1.70504 1.31232 1.48296 1.21695 0.91610 1.00201 1.04540 1.21089 0.92039 0.94222 1.05529 1.21646 0.97726 0.93379 1.04811 1.20684 0.81032 0.91966 0.76107 1.90670 1.54898 1.45879 1.47302 1.42567 1.07607 1.05069 1.72882 1.19157 0.91924 0.85280 1.03191 1.21556 1.01245 0.89103 1.19726 1.22569 0.84828 1.00014 1.02547 1.48775 1.06441 1.02576 1.52168 1.19759 0.79650 0.88261 0.99246 1.22137 1.06468 1.23637 1.12371 0.91808 1.25924 0.96426 0.93696 1.02126 1.70820 1.39937 1.28318 1.15028 0.83381 0.75840 0.75762 0.74346 1.21208 1.21261 1.20707 1.77338 1.15904 0.92159 1.28014 0.92278 0.92292 0.92138 0.91312 0.91302 0.91492 0.91498 0.76604 0.88668 0.88647 0.90106 0.90140 0.88452 0.88420 0.75417 0.82119 0.81516 0.93634 0.94785 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 9.91 37.16 0.37 -0.13 16 2 C -0.14 -0.45 6.05 -26.73 -0.16 -0.61 16 3 C 0.12 0.69 5.67 -4.04 -0.02 0.66 16 4 N -0.74 -4.20 5.56 -60.29 -0.33 -4.54 16 5 C 0.51 4.48 7.83 -10.98 -0.09 4.40 16 6 O -0.53 -7.37 15.98 5.56 0.09 -7.28 16 7 C -0.14 -0.82 5.70 -27.88 -0.16 -0.98 16 8 C -0.09 -0.84 3.79 -26.73 -0.10 -0.94 16 9 C -0.14 -1.09 5.70 -27.89 -0.16 -1.25 16 10 C 0.52 7.12 7.80 -10.99 -0.09 7.03 16 11 O -0.51 -9.10 13.11 5.55 0.07 -9.03 16 12 N -0.63 -9.58 5.45 -11.13 -0.06 -9.64 16 13 C 0.26 5.25 8.11 -154.39 -1.25 4.00 16 14 C -0.29 -5.82 9.61 -39.83 -0.38 -6.20 16 15 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 16 N -0.32 -7.56 3.67 -62.56 -0.23 -7.79 16 17 C 0.25 6.38 5.57 -5.19 -0.03 6.35 16 18 C -0.61 -17.24 9.24 -34.44 -0.32 -17.56 16 19 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 20 C 0.02 0.64 5.46 -17.82 -0.10 0.55 16 21 N -0.91 -26.48 13.65 55.43 0.76 -25.73 16 22 Si 1.08 25.04 29.90 -169.99 -5.08 19.96 16 23 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 24 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 N -0.30 -7.11 12.42 31.44 0.39 -6.72 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.16 8.14 -51.92 -0.42 -0.26 16 30 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.40 1.01 8.47 -40.82 -0.35 0.66 16 35 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.94 8.06 -51.93 -0.42 0.53 16 38 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16 39 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.41 4.88 8.82 -40.82 -0.36 4.52 16 42 H 0.16 3.21 5.92 -52.49 -0.31 2.90 16 43 H 0.17 2.81 8.06 -52.48 -0.42 2.39 16 44 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 45 H 0.03 0.91 8.00 -51.93 -0.42 0.49 16 46 H 0.27 7.66 7.22 -40.82 -0.29 7.36 16 LS Contribution 390.86 15.07 5.89 5.89 Total: -1.00 -37.75 390.86 -8.45 -46.20 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.26 Total: 2.53 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -2.68 Total: -3.85 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.52 Total: -54.42 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: 0.16 Total: -16.31 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.08 Total: 19.96 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.75 -8.45 -46.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117854393.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.311 kcal (2) G-P(sol) polarization free energy of solvation -37.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds