Wall clock time and date at job start Tue Mar 31 2020 13:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47371 * 2 1 4 4 N 1.46499 * 109.47469 * 179.97438 * 3 2 1 5 5 C 1.34779 * 119.99953 * 179.97438 * 4 3 2 6 6 O 1.21278 * 120.00044 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.99770 * 179.97438 * 5 4 3 8 8 C 1.53000 * 109.47052 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47389 * 180.02562 * 8 7 5 10 10 C 1.50696 * 109.47220 * 180.02562 * 9 8 7 11 11 O 1.21290 * 120.00012 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99736 * 179.97438 * 10 9 8 13 13 C 1.40159 * 119.99983 * 179.97438 * 12 10 9 14 14 C 1.40409 * 125.97033 * 0.02562 * 13 12 10 15 15 C 1.35241 * 107.86602 * 179.73843 * 14 13 12 16 16 N 1.34966 * 107.86079 * 0.39163 * 15 14 13 17 17 C 1.46500 * 125.97782 * 179.87198 * 16 15 14 18 18 C 1.50706 * 109.47299 * 124.71059 * 17 16 15 19 19 H 1.07998 * 119.99503 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00434 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 359.72891 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72576 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72423 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72459 * 22 20 18 26 26 N 1.31219 * 125.97718 * 179.97438 * 13 12 10 27 27 H 1.08995 * 109.46728 * 299.99787 * 1 2 3 28 28 H 1.08996 * 109.46597 * 60.00272 * 1 2 3 29 29 H 1.09008 * 109.46892 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47191 * 239.99701 * 2 1 3 31 31 H 1.09003 * 109.47432 * 119.99863 * 2 1 3 32 32 H 1.09001 * 109.47207 * 59.99711 * 3 2 1 33 33 H 1.09003 * 109.46731 * 300.00292 * 3 2 1 34 34 H 0.96996 * 119.99685 * 0.02562 * 4 3 2 35 35 H 1.09001 * 109.46978 * 60.00314 * 7 5 4 36 36 H 1.08996 * 109.47154 * 300.00773 * 7 5 4 37 37 H 1.09002 * 109.46562 * 60.00125 * 8 7 5 38 38 H 1.09003 * 109.47100 * 300.00688 * 8 7 5 39 39 H 1.09001 * 109.46879 * 60.00047 * 9 8 7 40 40 H 1.09006 * 109.47056 * 300.00623 * 9 8 7 41 41 H 0.97003 * 120.00166 * 0.02562 * 12 10 9 42 42 H 1.08002 * 126.06850 * 0.02562 * 14 13 12 43 43 H 1.08003 * 126.07024 * 180.26845 * 15 14 13 44 44 H 1.09004 * 109.47078 * 4.71821 * 17 16 15 45 45 H 1.08993 * 109.47364 * 244.71592 * 17 16 15 46 46 H 0.97000 * 120.00236 * 0.27947 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1789 2.6097 0.0002 6 8 3.5725 3.6600 -0.0002 7 6 5.6859 2.6097 0.0014 8 6 6.1959 4.0522 0.0013 9 6 7.7259 4.0523 0.0019 10 6 8.2282 5.4731 0.0024 11 8 7.4400 6.3949 0.0028 12 7 9.5533 5.7193 0.0035 13 6 10.0205 7.0407 0.0034 14 6 9.2240 8.1971 0.0028 15 6 10.0487 9.2689 0.0088 16 7 11.3193 8.8136 0.0043 17 6 12.5294 9.6394 0.0057 18 6 13.4027 9.2490 1.1702 19 1 13.0879 8.4641 1.8419 20 6 14.6034 9.8939 1.3782 21 7 14.9892 10.8462 0.5572 22 14 15.6862 9.4096 2.8213 23 1 15.3301 10.2323 4.0052 24 1 15.4783 7.9733 3.1359 25 1 17.1107 9.6383 2.4700 26 7 11.2786 7.4135 0.0049 27 1 -0.3632 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9900 0.6025 0.0006 35 1 6.0500 2.0952 -0.8879 36 1 6.0485 2.0965 0.8920 37 1 5.8318 4.5663 0.8909 38 1 5.8332 4.5657 -0.8891 39 1 8.0896 3.5383 -0.8879 40 1 8.0889 3.5385 0.8921 41 1 10.1836 4.9820 0.0036 42 1 8.1444 8.2256 0.0027 43 1 9.7446 10.3052 0.0141 44 1 12.2524 10.6898 0.0954 45 1 13.0751 9.4858 -0.9252 46 1 14.4271 11.0975 -0.1923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117854393.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:50 Heat of formation + Delta-G solvation = -46.087983 kcal Electronic energy + Delta-G solvation = -25287.617854 eV Core-core repulsion = 21405.110398 eV Total energy + Delta-G solvation = -3882.507456 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.28984 -40.89024 -40.47284 -36.86225 -36.44909 -35.50663 -35.23861 -33.53749 -32.73208 -31.04560 -29.97997 -28.16502 -26.96123 -25.20920 -23.97891 -22.63149 -22.48837 -21.76497 -21.08479 -20.89358 -19.24325 -18.47206 -18.03773 -17.60312 -17.25831 -16.93370 -16.86385 -16.65660 -16.11725 -15.74834 -15.61556 -15.30969 -15.03261 -14.70171 -14.58327 -14.12539 -13.92543 -13.82147 -13.71746 -13.46675 -13.28131 -13.16079 -12.78176 -12.77841 -12.59589 -12.40742 -12.03270 -11.99857 -11.97007 -11.75500 -11.68504 -11.66596 -11.00901 -10.97398 -10.78636 -10.69261 -10.08394 -9.84586 -9.21191 -8.78533 -6.56981 0.88923 1.31959 1.42352 1.50936 1.58595 1.69412 1.78806 2.19268 2.20122 2.40263 2.49437 3.00702 3.57241 3.77935 3.89575 3.94441 4.06476 4.07317 4.12306 4.13062 4.34887 4.54606 4.56437 4.62236 4.67127 4.68886 4.75235 4.77098 4.79044 4.81987 4.83426 4.91774 5.11564 5.14623 5.19527 5.24212 5.34318 5.42807 5.53732 5.54423 5.83020 5.92790 6.23728 6.27255 6.40455 6.61220 6.94463 7.15968 7.19310 7.33322 8.57436 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.038470 B = 0.001567 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.673341 B =17869.100954 C =18288.080571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C 0.114 3.886 4 N -0.720 5.720 5 C 0.501 3.499 6 O -0.596 6.596 7 C -0.128 4.128 8 C -0.089 4.089 9 C -0.118 4.118 10 C 0.511 3.489 11 O -0.558 6.558 12 N -0.625 5.625 13 C 0.267 3.733 14 C -0.295 4.295 15 C 0.054 3.946 16 N -0.344 5.344 17 C 0.259 3.741 18 C -0.622 4.622 19 H 0.045 0.955 20 C -0.018 4.018 21 N -0.923 5.923 22 Si 1.123 2.877 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.275 1.275 26 N -0.345 5.345 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.419 0.581 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.427 0.573 42 H 0.165 0.835 43 H 0.199 0.801 44 H 0.052 0.948 45 H 0.017 0.983 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.806 -27.196 -1.487 35.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.011 4.011 4 N -0.374 5.374 5 C 0.289 3.711 6 O -0.476 6.476 7 C -0.167 4.167 8 C -0.128 4.128 9 C -0.158 4.158 10 C 0.301 3.699 11 O -0.433 6.433 12 N -0.276 5.276 13 C 0.012 3.988 14 C -0.326 4.326 15 C -0.095 4.095 16 N -0.126 5.126 17 C 0.140 3.860 18 C -0.660 4.660 19 H 0.064 0.936 20 C -0.218 4.218 21 N -0.559 5.559 22 Si 0.944 3.056 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.200 1.200 26 N -0.175 5.175 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.257 0.743 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.266 0.734 42 H 0.183 0.817 43 H 0.216 0.784 44 H 0.070 0.930 45 H 0.035 0.965 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.103 -25.817 -0.762 33.353 hybrid contribution -1.865 0.077 -1.013 2.124 sum -22.968 -25.740 -1.775 34.543 Atomic orbital electron populations 1.21713 0.94649 1.02755 1.01998 1.21672 0.96879 0.93833 1.03840 1.21408 0.79986 0.98727 1.00937 1.45964 1.07344 1.09024 1.75027 1.21460 0.91940 0.83149 0.74561 1.90739 1.71912 1.33556 1.51433 1.21685 0.89019 0.98136 1.07887 1.20985 0.93059 0.96205 1.02508 1.21730 0.96234 0.89359 1.08452 1.21932 0.79864 0.94092 0.74049 1.90653 1.55771 1.47920 1.49005 1.42799 1.08666 1.03441 1.72673 1.19570 0.91018 0.87630 1.00624 1.21740 1.01393 0.89409 1.20034 1.23154 0.83689 1.01758 1.00857 1.48568 1.06610 1.02914 1.54478 1.19425 0.80253 0.88860 0.97484 1.22312 1.07423 1.23315 1.12985 0.93633 1.27304 0.97659 0.92979 1.03837 1.70918 1.40159 1.29332 1.15531 0.82834 0.74552 0.76140 0.72067 1.19445 1.20393 1.19979 1.77255 1.17643 0.92212 1.30430 0.92812 0.92799 0.91035 0.90066 0.90091 0.93238 0.93199 0.74307 0.85061 0.85146 0.93400 0.93292 0.84458 0.84619 0.73426 0.81739 0.78387 0.92998 0.96508 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 71.98 0.71 -0.16 16 2 C -0.12 -0.61 6.05 30.59 0.19 -0.42 16 3 C 0.11 1.30 5.67 86.38 0.49 1.79 16 4 N -0.72 -6.91 5.56 -463.06 -2.57 -9.48 16 5 C 0.50 8.26 7.83 87.66 0.69 8.94 16 6 O -0.60 -17.23 15.98 -3.02 -0.05 -17.28 16 7 C -0.13 -1.05 5.70 29.85 0.17 -0.88 16 8 C -0.09 -1.52 3.79 30.59 0.12 -1.41 16 9 C -0.12 -1.46 5.70 29.85 0.17 -1.29 16 10 C 0.51 13.30 7.80 87.66 0.68 13.99 16 11 O -0.56 -19.81 13.11 -3.06 -0.04 -19.85 16 12 N -0.63 -17.94 5.45 -307.52 -1.68 -19.62 16 13 C 0.27 10.78 8.11 133.32 1.08 11.86 16 14 C -0.29 -12.04 9.61 22.11 0.21 -11.82 16 15 C 0.05 2.20 11.44 83.52 0.96 3.16 16 16 N -0.34 -16.58 3.67 -351.83 -1.29 -17.87 16 17 C 0.26 13.58 5.57 85.64 0.48 14.05 16 18 C -0.62 -35.80 9.24 25.60 0.24 -35.56 16 19 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 20 C -0.02 -1.02 5.46 84.65 0.46 -0.56 16 21 N -0.92 -54.28 13.65 21.45 0.29 -53.99 16 22 Si 1.12 49.82 29.90 68.60 2.05 51.87 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 26 N -0.34 -16.30 12.42 -54.45 -0.68 -16.98 16 27 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.07 0.27 8.14 -2.38 -0.02 0.25 16 30 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.42 0.69 8.47 -92.71 -0.79 -0.10 16 35 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.05 1.13 8.06 -2.39 -0.02 1.11 16 38 H 0.05 1.14 8.06 -2.39 -0.02 1.12 16 39 H 0.14 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.14 0.79 8.14 -2.38 -0.02 0.77 16 41 H 0.43 9.11 8.82 -92.71 -0.82 8.30 16 42 H 0.17 6.63 5.92 -2.91 -0.02 6.61 16 43 H 0.20 6.53 8.06 -2.91 -0.02 6.51 16 44 H 0.05 2.62 7.94 -2.39 -0.02 2.60 16 45 H 0.02 0.93 8.00 -2.39 -0.02 0.92 16 46 H 0.26 15.19 7.22 -92.71 -0.67 14.52 16 Total: -1.00 -87.41 390.86 2.17 -85.24 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -0.51 Total: 16.27 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 6.64 Total: 1.69 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -5.92 Total: -117.94 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -0.09 Total: -37.13 kcal Atomic # 14 Polarization: 49.82 SS G_CDS: 2.05 Total: 51.87 kcal Total: -87.41 2.17 -85.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117854393.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.150 kcal (2) G-P(sol) polarization free energy of solvation -87.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds