Wall clock time and date at job start Tue Mar 31 2020 13:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46885 * 2 1 4 4 N 1.46499 * 109.47323 * 119.99875 * 2 1 3 5 5 C 1.34779 * 119.99953 * 154.99854 * 4 2 1 6 6 O 1.21278 * 120.00044 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99770 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.47052 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47389 * 180.02562 * 8 7 5 10 10 C 1.50696 * 109.47220 * 180.02562 * 9 8 7 11 11 O 1.21290 * 120.00012 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99736 * 179.97438 * 10 9 8 13 13 C 1.40159 * 119.99983 * 179.97438 * 12 10 9 14 14 C 1.40409 * 125.97033 * 0.02562 * 13 12 10 15 15 C 1.35241 * 107.86602 * 179.73843 * 14 13 12 16 16 N 1.34966 * 107.86079 * 0.39163 * 15 14 13 17 17 C 1.46500 * 125.97782 * 179.87198 * 16 15 14 18 18 C 1.50706 * 109.47299 * 124.71059 * 17 16 15 19 19 H 1.07998 * 119.99503 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00434 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 359.72891 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72558 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72681 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72491 * 22 20 18 26 26 N 1.31219 * 125.97718 * 179.97438 * 13 12 10 27 27 H 1.08995 * 109.47444 * 300.00056 * 1 2 3 28 28 H 1.09000 * 109.47280 * 60.00423 * 1 2 3 29 29 H 1.09008 * 109.46846 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47140 * 239.99960 * 2 1 3 31 31 H 1.08999 * 109.47433 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47542 * 299.99699 * 3 2 1 33 33 H 1.09003 * 109.47264 * 60.00037 * 3 2 1 34 34 H 0.96996 * 119.99685 * 335.00436 * 4 2 1 35 35 H 1.09001 * 109.46978 * 60.00314 * 7 5 4 36 36 H 1.08996 * 109.47154 * 300.00773 * 7 5 4 37 37 H 1.09002 * 109.46562 * 60.00125 * 8 7 5 38 38 H 1.09003 * 109.47100 * 300.00688 * 8 7 5 39 39 H 1.09001 * 109.46879 * 60.00047 * 9 8 7 40 40 H 1.09006 * 109.47056 * 300.00623 * 9 8 7 41 41 H 0.97003 * 120.00166 * 0.02562 * 12 10 9 42 42 H 1.08002 * 126.06850 * 0.02562 * 14 13 12 43 43 H 1.08003 * 126.07024 * 180.26845 * 15 14 13 44 44 H 1.09004 * 109.47078 * 4.71821 * 17 16 15 45 45 H 1.08993 * 109.47364 * 244.71592 * 17 16 15 46 46 H 0.97000 * 120.00236 * 0.27947 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 3.2404 -1.2591 1.1943 6 8 3.9358 -1.1987 0.2026 7 6 3.7429 -1.9690 2.4250 8 6 5.1457 -2.5191 2.1594 9 6 5.6558 -3.2403 3.4085 10 6 7.0377 -3.7815 3.1471 11 8 7.5631 -3.6071 2.0679 12 7 7.6901 -4.4585 4.1128 13 6 8.9751 -4.9623 3.8695 14 6 9.6978 -4.8352 2.6724 15 6 10.8911 -5.4489 2.8409 16 7 10.9235 -5.9545 4.0919 17 6 12.0330 -6.7013 4.6899 18 6 12.4540 -6.0335 5.9737 19 1 11.9456 -5.1422 6.3106 20 6 13.4880 -6.5604 6.7180 21 7 14.1036 -7.6488 6.3104 22 14 14.0093 -5.7331 8.3096 23 1 15.1301 -6.4934 8.9188 24 1 14.4509 -4.3442 8.0240 25 1 12.8615 -5.7038 9.2512 26 7 9.7135 -5.6345 4.7208 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.4622 -0.7387 1.9894 35 1 3.0704 -2.7910 2.6704 36 1 3.7797 -1.2683 3.2591 37 1 5.8179 -1.6967 1.9142 38 1 5.1093 -3.2196 1.3251 39 1 4.9834 -4.0626 3.6533 40 1 5.6920 -2.5400 4.2431 41 1 7.2700 -4.5977 4.9760 42 1 9.3624 -4.3321 1.7775 43 1 11.6776 -5.5232 2.1045 44 1 12.8742 -6.7192 3.9969 45 1 11.7129 -7.7219 4.8992 46 1 13.8328 -8.0786 5.4841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117854990.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:53 Heat of formation + Delta-G solvation = -42.640453 kcal Electronic energy + Delta-G solvation = -25567.776390 eV Core-core repulsion = 21685.418430 eV Total energy + Delta-G solvation = -3882.357960 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.29151 -40.93976 -40.51163 -37.07409 -36.45131 -35.50728 -35.22924 -32.83855 -32.46707 -31.04480 -29.58362 -28.10302 -28.03849 -25.34530 -24.33559 -22.75033 -22.09974 -21.63432 -21.22223 -20.90635 -19.24491 -18.49364 -18.04906 -17.69494 -17.21055 -16.98033 -16.80758 -16.37124 -15.91956 -15.63256 -15.33406 -15.26240 -15.02235 -14.68664 -14.56974 -14.13056 -13.93813 -13.82365 -13.71522 -13.41148 -13.23388 -13.07805 -12.82524 -12.80357 -12.60416 -12.40878 -12.29017 -11.99822 -11.95111 -11.91357 -11.68515 -11.66719 -11.01085 -10.95023 -10.75763 -10.69755 -10.07389 -9.84766 -9.21303 -8.78538 -6.57028 0.88740 1.31809 1.42150 1.51379 1.57801 1.72080 1.79623 2.19245 2.20906 2.40725 2.49749 3.00574 3.57172 3.76555 3.88861 3.97143 4.08204 4.10298 4.12932 4.16346 4.32692 4.54797 4.57028 4.64113 4.68733 4.72819 4.74756 4.76969 4.79237 4.81918 4.84880 4.93524 5.05995 5.11480 5.19557 5.26577 5.31714 5.43213 5.54334 5.61888 5.82742 5.92506 6.23448 6.27036 6.40192 6.64953 6.94304 7.15814 7.19225 7.37112 8.57349 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.034984 B = 0.001655 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.174231 B =16911.357293 C =17247.175333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.129 3.871 3 C -0.160 4.160 4 N -0.716 5.716 5 C 0.502 3.498 6 O -0.594 6.594 7 C -0.129 4.129 8 C -0.088 4.088 9 C -0.119 4.119 10 C 0.511 3.489 11 O -0.557 6.557 12 N -0.625 5.625 13 C 0.267 3.733 14 C -0.295 4.295 15 C 0.054 3.946 16 N -0.344 5.344 17 C 0.259 3.741 18 C -0.623 4.623 19 H 0.046 0.954 20 C -0.019 4.019 21 N -0.923 5.923 22 Si 1.121 2.879 23 H -0.275 1.275 24 H -0.272 1.272 25 H -0.273 1.273 26 N -0.345 5.345 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.030 0.970 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.418 0.582 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.427 0.573 42 H 0.165 0.835 43 H 0.199 0.801 44 H 0.052 0.948 45 H 0.017 0.983 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.085 15.265 -6.241 35.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.024 3.976 3 C -0.218 4.218 4 N -0.370 5.370 5 C 0.290 3.710 6 O -0.474 6.474 7 C -0.168 4.168 8 C -0.127 4.127 9 C -0.158 4.158 10 C 0.301 3.699 11 O -0.433 6.433 12 N -0.276 5.276 13 C 0.012 3.988 14 C -0.326 4.326 15 C -0.095 4.095 16 N -0.126 5.126 17 C 0.140 3.860 18 C -0.661 4.661 19 H 0.064 0.936 20 C -0.218 4.218 21 N -0.559 5.559 22 Si 0.942 3.058 23 H -0.200 1.200 24 H -0.197 1.197 25 H -0.199 1.199 26 N -0.175 5.175 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.255 0.745 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.155 0.845 40 H 0.153 0.847 41 H 0.266 0.734 42 H 0.183 0.817 43 H 0.216 0.784 44 H 0.070 0.930 45 H 0.035 0.965 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -29.053 14.783 -5.264 33.020 hybrid contribution -0.898 -0.002 -1.851 2.058 sum -29.950 14.781 -7.115 34.148 Atomic orbital electron populations 1.22011 0.91593 1.03155 1.04105 1.20966 0.95788 0.92621 0.88206 1.22149 1.00234 0.96156 1.03296 1.46079 1.17474 1.56053 1.17384 1.21418 0.81271 0.78070 0.90202 1.90733 1.57640 1.61470 1.37559 1.21689 0.96874 1.02606 0.95666 1.20976 0.95620 0.99651 0.96424 1.21730 0.89406 1.03515 1.01136 1.21926 0.89232 0.76216 0.82554 1.90653 1.69139 1.57569 1.25973 1.42798 1.11927 1.54167 1.18680 1.19563 0.88452 0.97537 0.93234 1.21740 0.95410 1.14449 1.00989 1.23154 1.00192 0.97516 0.88606 1.48568 1.12371 1.42077 1.09556 1.19423 0.81286 0.90563 0.94739 1.22294 1.20879 1.14424 1.08503 0.93587 1.27314 0.92926 0.95532 1.06054 1.70948 1.42204 1.18909 1.23798 0.82865 0.76630 0.75092 0.71228 1.19968 1.19721 1.19884 1.77253 0.94928 1.24055 1.21314 0.90334 0.90363 0.91732 0.92420 0.95047 0.90745 0.90937 0.74483 0.85151 0.85300 0.93447 0.93289 0.84483 0.84669 0.73422 0.81747 0.78399 0.93007 0.96506 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.38 71.98 0.68 -0.01 16 2 C 0.13 1.44 3.18 44.99 0.14 1.59 16 3 C -0.16 -1.84 9.48 71.98 0.68 -1.16 16 4 N -0.72 -6.85 5.08 -442.53 -2.25 -9.10 16 5 C 0.50 8.24 7.79 87.66 0.68 8.92 16 6 O -0.59 -16.94 15.64 -3.02 -0.05 -16.99 16 7 C -0.13 -1.08 5.70 29.85 0.17 -0.91 16 8 C -0.09 -1.52 3.79 30.59 0.12 -1.40 16 9 C -0.12 -1.48 5.70 29.85 0.17 -1.31 16 10 C 0.51 13.34 7.80 87.66 0.68 14.02 16 11 O -0.56 -19.83 13.11 -3.06 -0.04 -19.87 16 12 N -0.63 -17.95 5.45 -307.52 -1.68 -19.63 16 13 C 0.27 10.81 8.11 133.32 1.08 11.89 16 14 C -0.29 -12.05 9.61 22.11 0.21 -11.84 16 15 C 0.05 2.20 11.44 83.52 0.96 3.16 16 16 N -0.34 -16.60 3.67 -351.83 -1.29 -17.89 16 17 C 0.26 13.59 5.57 85.64 0.48 14.07 16 18 C -0.62 -35.85 9.24 25.60 0.24 -35.61 16 19 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 20 C -0.02 -1.05 5.46 84.65 0.46 -0.59 16 21 N -0.92 -54.31 13.65 21.45 0.29 -54.01 16 22 Si 1.12 49.75 29.90 68.60 2.05 51.80 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 26 N -0.34 -16.30 12.42 -54.45 -0.68 -16.98 16 27 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 28 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.06 0.29 8.14 -2.38 -0.02 0.27 16 30 H 0.06 1.00 7.58 -2.39 -0.02 0.98 16 31 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.42 0.79 8.60 -92.71 -0.80 -0.01 16 35 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.05 1.13 8.06 -2.39 -0.02 1.11 16 38 H 0.05 1.15 8.06 -2.39 -0.02 1.13 16 39 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.14 0.82 8.14 -2.38 -0.02 0.80 16 41 H 0.43 9.12 8.82 -92.71 -0.82 8.30 16 42 H 0.17 6.63 5.92 -2.91 -0.02 6.62 16 43 H 0.20 6.54 8.06 -2.91 -0.02 6.52 16 44 H 0.05 2.62 7.94 -2.39 -0.02 2.60 16 45 H 0.02 0.94 8.00 -2.39 -0.02 0.92 16 46 H 0.26 15.19 7.22 -92.71 -0.67 14.52 16 Total: -1.00 -87.24 389.99 2.60 -84.64 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -0.52 Total: 17.21 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 6.75 Total: 0.81 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -5.60 Total: -117.61 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.09 Total: -36.86 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 2.05 Total: 51.80 kcal Total: -87.24 2.60 -84.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117854990.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.004 kcal (2) G-P(sol) polarization free energy of solvation -87.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds