Wall clock time and date at job start Tue Mar 31 2020 15:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46959 * 2 1 4 4 N 1.46494 * 109.47135 * 239.99743 * 2 1 3 5 5 C 1.34780 * 120.00332 * 84.99963 * 4 2 1 6 6 O 1.21596 * 119.99507 * 0.02562 * 5 4 2 7 7 N 1.34768 * 120.00292 * 180.02562 * 5 4 2 8 8 C 1.40201 * 120.00142 * 180.02562 * 7 5 4 9 9 C 1.40396 * 125.97176 * 359.97438 * 8 7 5 10 10 C 1.35243 * 107.86896 * 179.97438 * 9 8 7 11 11 N 1.34962 * 107.85356 * 0.22585 * 10 9 8 12 12 C 1.46501 * 125.97082 * 179.76577 * 11 10 9 13 13 C 1.50703 * 109.46706 * 125.00181 * 12 11 10 14 14 H 1.07992 * 120.00189 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99721 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00333 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99825 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47151 * 90.00298 * 17 15 13 19 19 H 1.48497 * 109.47275 * 210.00193 * 17 15 13 20 20 H 1.48501 * 109.47082 * 330.00431 * 17 15 13 21 21 N 1.31202 * 125.97171 * 179.97438 * 8 7 5 22 22 C 1.52999 * 109.46775 * 119.99805 * 2 1 3 23 23 C 1.53173 * 109.54632 * 59.82399 * 22 2 1 24 24 C 1.53108 * 109.15666 * 183.24144 * 23 22 2 25 25 O 1.42901 * 109.48696 * 57.47607 * 24 23 22 26 26 C 1.42901 * 114.09540 * 298.88452 * 25 24 23 27 27 C 1.53094 * 109.41665 * 61.16226 * 26 25 24 28 28 H 1.08997 * 109.47455 * 300.00608 * 1 2 3 29 29 H 1.09004 * 109.46744 * 60.00157 * 1 2 3 30 30 H 1.08995 * 109.47186 * 180.02562 * 1 2 3 31 31 H 0.96998 * 120.00015 * 264.99989 * 4 2 1 32 32 H 0.96998 * 120.00056 * 359.97438 * 7 5 4 33 33 H 1.08003 * 126.06768 * 359.93842 * 9 8 7 34 34 H 1.08002 * 126.06857 * 179.97438 * 10 9 8 35 35 H 1.09000 * 109.47836 * 245.00121 * 12 11 10 36 36 H 1.08997 * 109.47518 * 5.00660 * 12 11 10 37 37 H 0.96995 * 120.00331 * 179.97438 * 16 15 13 38 38 H 1.09003 * 109.54234 * 180.02562 * 22 2 1 39 39 H 1.09000 * 109.51805 * 303.05693 * 23 22 2 40 40 H 1.08998 * 109.52362 * 63.24287 * 23 22 2 41 41 H 1.08997 * 109.40341 * 297.48815 * 24 23 22 42 42 H 1.09005 * 109.47905 * 177.50467 * 24 23 22 43 43 H 1.09004 * 109.48261 * 301.18162 * 26 25 24 44 44 H 1.08997 * 109.48205 * 181.14535 * 26 25 24 45 45 H 1.08992 * 109.52551 * 182.48246 * 27 26 25 46 46 H 1.08999 * 109.52014 * 62.29166 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8583 1.1615 -2.4117 7 7 2.5958 -0.6539 -3.4576 8 6 2.7303 0.0456 -4.6652 9 6 2.4349 1.4029 -4.8694 10 6 2.6971 1.6945 -6.1637 11 7 3.1369 0.5670 -6.7610 12 6 3.5299 0.4346 -8.1661 13 6 4.9289 -0.1199 -8.2463 14 1 5.4708 -0.3510 -7.3412 15 6 5.5165 -0.3332 -9.4752 16 7 4.8564 -0.0523 -10.5774 17 14 7.2509 -1.0199 -9.5746 18 1 7.1941 -2.5031 -9.6221 19 1 7.9155 -0.5105 -10.8010 20 1 8.0219 -0.5921 -8.3797 21 7 3.1541 -0.4538 -5.8020 22 6 2.0399 -0.7212 1.2493 23 6 1.5267 -2.1644 1.2533 24 6 1.9741 -2.8532 2.5453 25 8 1.4892 -2.1175 3.6704 26 6 1.9758 -0.7759 3.7438 27 6 1.5266 -0.0029 2.5011 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 2.2490 -1.6318 -1.1525 32 1 2.8265 -1.5950 -3.4140 33 1 2.0635 2.0917 -4.1251 34 1 2.5725 2.6576 -6.6364 35 1 2.8416 -0.2411 -8.6739 36 1 3.4988 1.4128 -8.6459 37 1 5.2699 -0.2020 -11.4420 38 1 3.1300 -0.7215 1.2507 39 1 0.4379 -2.1638 1.2004 40 1 1.9337 -2.6981 0.3945 41 1 3.0630 -2.8908 2.5773 42 1 1.5743 -3.8669 2.5741 43 1 3.0648 -0.7863 3.7915 44 1 1.5773 -0.2930 4.6360 45 1 1.9336 1.0077 2.5338 46 1 0.4379 0.0426 2.4742 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119093236.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:09 Heat of formation + Delta-G solvation = 0.181113 kcal Electronic energy + Delta-G solvation = -26784.469570 eV Core-core repulsion = 22903.968492 eV Total energy + Delta-G solvation = -3880.501078 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.84697 -40.23056 -39.31122 -36.71457 -34.64191 -33.52714 -33.06948 -31.56214 -30.96191 -29.74351 -29.22187 -26.64304 -25.87585 -24.15026 -23.42829 -22.57652 -21.45327 -20.37168 -19.96439 -19.56250 -18.08651 -16.94509 -16.57248 -16.47962 -16.34989 -15.78328 -15.53350 -15.24853 -15.18085 -14.89186 -14.41342 -14.11417 -14.09280 -13.87968 -13.31931 -13.09863 -12.75790 -12.72887 -12.32675 -12.30436 -12.20365 -11.84820 -11.72832 -11.41810 -11.33514 -11.04071 -11.01510 -10.88625 -10.56117 -10.40865 -10.25275 -10.05906 -9.96714 -9.67020 -9.48577 -9.23855 -8.62769 -8.08706 -7.39950 -6.23659 -4.28595 2.38287 2.68211 3.12882 3.23735 3.29465 3.34491 3.45673 3.60881 3.85401 4.20371 4.22654 4.24362 4.32704 4.39716 4.57203 4.76921 4.84553 4.95938 5.03133 5.10332 5.11341 5.19406 5.24928 5.34077 5.42803 5.47775 5.53164 5.59249 5.63235 5.77636 5.79623 5.84465 6.12421 6.24605 6.35026 6.55759 6.60931 6.76759 6.88759 7.02391 7.12268 7.51421 7.70436 7.83732 7.99193 8.08215 8.61078 8.67897 8.81876 9.36850 10.85000 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024114 B = 0.002136 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.865086 B =13103.603021 C =13853.802978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.169 3.831 3 H 0.092 0.908 4 N -0.741 5.741 5 C 0.713 3.287 6 O -0.567 6.567 7 N -0.644 5.644 8 C 0.276 3.724 9 C -0.286 4.286 10 C 0.051 3.949 11 N -0.321 5.321 12 C 0.258 3.742 13 C -0.527 4.527 14 H 0.069 0.931 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.908 3.092 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.273 1.273 21 N -0.308 5.308 22 C -0.098 4.098 23 C -0.156 4.156 24 C 0.061 3.939 25 O -0.383 6.383 26 C 0.061 3.939 27 C -0.151 4.151 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.394 0.606 32 H 0.406 0.594 33 H 0.161 0.839 34 H 0.167 0.833 35 H 0.044 0.956 36 H 0.057 0.943 37 H 0.267 0.733 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.050 0.950 42 H 0.094 0.906 43 H 0.050 0.950 44 H 0.094 0.906 45 H 0.078 0.922 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.527 -2.406 26.367 27.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.064 3.936 3 H 0.110 0.890 4 N -0.398 5.398 5 C 0.413 3.587 6 O -0.442 6.442 7 N -0.294 5.294 8 C 0.022 3.978 9 C -0.318 4.318 10 C -0.099 4.099 11 N -0.103 5.103 12 C 0.141 3.859 13 C -0.566 4.566 14 H 0.087 0.913 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.735 3.265 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 N -0.139 5.139 22 C -0.117 4.117 23 C -0.194 4.194 24 C -0.016 4.016 25 O -0.302 6.302 26 C -0.016 4.016 27 C -0.189 4.189 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.229 0.771 32 H 0.240 0.760 33 H 0.178 0.822 34 H 0.184 0.816 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.112 0.888 43 H 0.068 0.932 44 H 0.113 0.887 45 H 0.097 0.903 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.449 -2.433 25.520 26.696 hybrid contribution 1.109 -0.500 -0.131 1.224 sum -6.340 -2.934 25.389 26.333 Atomic orbital electron populations 1.22329 0.95344 1.02294 1.02761 1.20747 0.94033 0.96979 0.81811 0.89034 1.45176 1.72206 1.13657 1.08722 1.15642 0.78343 0.84974 0.79774 1.90863 1.55744 1.13900 1.83731 1.41398 1.68382 1.13263 1.06361 1.18783 1.01636 0.91563 0.85858 1.21507 1.17818 0.95488 0.96945 1.22555 1.00429 0.93189 0.93770 1.49047 1.46522 1.04548 1.10137 1.19731 0.96965 0.99302 0.69903 1.21260 0.98384 1.43681 0.93255 0.91330 1.24951 0.98760 0.95245 0.95191 1.69915 1.37837 1.47848 0.97772 0.86326 0.83308 0.79247 0.77595 1.20363 1.20991 1.19746 1.77315 1.26778 1.13733 0.96115 1.21478 1.00864 0.95093 0.94229 1.22348 1.02860 0.95692 0.98484 1.22577 0.98332 0.95444 0.85268 1.87944 1.71723 1.24572 1.45980 1.22583 0.98332 0.82659 0.98032 1.22285 1.02745 0.99754 0.94132 0.91447 0.91691 0.92243 0.77123 0.75985 0.82206 0.81552 0.93769 0.92544 0.92343 0.90286 0.90063 0.90894 0.93179 0.88799 0.93166 0.88739 0.90342 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 8.78 37.16 0.33 -1.07 16 2 C 0.17 1.43 2.41 -67.93 -0.16 1.27 16 3 H 0.09 0.95 7.58 -51.93 -0.39 0.55 16 4 N -0.74 -7.14 5.00 -58.68 -0.29 -7.43 16 5 C 0.71 10.31 8.50 -86.92 -0.74 9.57 16 6 O -0.57 -10.08 13.13 5.28 0.07 -10.01 16 7 N -0.64 -9.99 5.45 -15.51 -0.08 -10.07 16 8 C 0.28 5.58 8.11 -154.36 -1.25 4.33 16 9 C -0.29 -5.77 9.61 -39.84 -0.38 -6.15 16 10 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 11 N -0.32 -7.52 3.67 -62.56 -0.23 -7.75 16 12 C 0.26 6.61 6.26 -5.19 -0.03 6.58 16 13 C -0.53 -14.73 9.23 -34.44 -0.32 -15.04 16 14 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.90 -25.39 13.29 55.43 0.74 -24.65 16 17 Si 0.91 21.40 29.54 -169.99 -5.02 16.38 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 N -0.31 -7.14 12.42 31.44 0.39 -6.75 16 22 C -0.10 -0.60 2.26 -90.44 -0.20 -0.81 16 23 C -0.16 -0.86 4.92 -26.59 -0.13 -0.99 16 24 C 0.06 0.36 6.84 37.21 0.25 0.61 16 25 O -0.38 -3.01 10.77 -35.23 -0.38 -3.39 16 26 C 0.06 0.35 6.84 37.21 0.25 0.61 16 27 C -0.15 -0.84 5.15 -26.59 -0.14 -0.98 16 28 H 0.07 0.46 6.36 -51.93 -0.33 0.13 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.45 6.36 -51.93 -0.33 0.12 16 31 H 0.39 2.77 6.95 -40.82 -0.28 2.48 16 32 H 0.41 5.06 8.84 -40.82 -0.36 4.70 16 33 H 0.16 3.16 5.91 -52.48 -0.31 2.85 16 34 H 0.17 2.75 8.06 -52.49 -0.42 2.33 16 35 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.41 8.07 -51.93 -0.42 1.00 16 37 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.49 6.28 -51.93 -0.33 0.17 16 40 H 0.07 0.33 6.64 -51.93 -0.34 -0.01 16 41 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 44 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 0.47 6.28 -51.93 -0.33 0.14 16 LS Contribution 368.99 15.07 5.56 5.56 Total: -1.00 -33.47 368.99 -8.84 -42.31 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.78 Total: 5.46 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -2.82 Total: 0.34 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.52 Total: -56.65 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.31 Total: -13.40 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.47 -8.84 -42.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119093236.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.495 kcal (2) G-P(sol) polarization free energy of solvation -33.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds