Wall clock time and date at job start Tue Mar 31 2020 13:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47004 * 2 1 4 4 N 1.46498 * 109.46782 * 179.97438 * 3 2 1 5 5 C 1.46501 * 120.00056 * 269.99973 * 4 3 2 6 6 C 1.53008 * 109.46846 * 263.16394 * 5 4 3 7 7 C 1.52999 * 109.46744 * 179.97438 * 6 5 4 8 8 C 1.34781 * 120.00224 * 90.00051 * 4 3 2 9 9 O 1.21359 * 119.99567 * 4.12769 * 8 4 3 10 10 C 1.49336 * 119.99875 * 184.12804 * 8 4 3 11 11 O 1.21383 * 120.00607 * 354.27463 * 10 8 4 12 12 N 1.34780 * 119.99575 * 174.26986 * 10 8 4 13 13 C 1.39940 * 119.99779 * 180.02562 * 12 10 8 14 14 C 1.40458 * 125.98041 * 359.97438 * 13 12 10 15 15 C 1.35214 * 107.86629 * 179.74060 * 14 13 12 16 16 N 1.34988 * 107.87296 * 0.41637 * 15 14 13 17 17 C 1.46505 * 125.96660 * 179.84031 * 16 15 14 18 18 C 1.50706 * 109.46887 * 124.72253 * 17 16 15 19 19 H 1.08001 * 119.99505 * 359.97438 * 18 17 16 20 20 C 1.37872 * 119.99977 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99939 * 359.71703 * 20 18 17 22 22 Si 1.86799 * 120.00037 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.46985 * 269.72128 * 22 20 18 24 24 H 1.48496 * 109.46983 * 29.72289 * 22 20 18 25 25 H 1.48503 * 109.47133 * 149.71819 * 22 20 18 26 26 N 1.31271 * 125.97729 * 179.97438 * 13 12 10 27 27 H 1.09005 * 109.46798 * 60.00516 * 1 2 3 28 28 H 1.09004 * 109.47087 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47348 * 300.00272 * 1 2 3 30 30 H 1.09002 * 109.47067 * 239.99473 * 2 1 3 31 31 H 1.08994 * 109.46668 * 119.99954 * 2 1 3 32 32 H 1.08995 * 109.47290 * 59.99692 * 3 2 1 33 33 H 1.09005 * 109.46921 * 299.99408 * 3 2 1 34 34 H 1.09004 * 109.46994 * 23.15955 * 5 4 3 35 35 H 1.08995 * 109.47735 * 143.16341 * 5 4 3 36 36 H 1.09004 * 109.46966 * 299.99578 * 6 5 4 37 37 H 1.08998 * 109.47476 * 59.99657 * 6 5 4 38 38 H 1.08996 * 109.47449 * 299.99890 * 7 6 5 39 39 H 1.09006 * 109.47105 * 60.00064 * 7 6 5 40 40 H 1.09004 * 109.47097 * 179.97438 * 7 6 5 41 41 H 0.96998 * 120.00457 * 0.02562 * 12 10 8 42 42 H 1.08005 * 126.06453 * 359.97438 * 14 13 12 43 43 H 1.08001 * 126.06030 * 180.26820 * 15 14 13 44 44 H 1.08999 * 109.47358 * 4.72353 * 17 16 15 45 45 H 1.08996 * 109.47264 * 244.71856 * 17 16 15 46 46 H 0.96999 * 120.00181 * 0.28287 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2370 1.4426 1.2697 6 6 4.6406 2.8750 1.6254 7 6 5.4045 2.8752 2.9510 8 6 4.1794 1.4423 -1.1663 9 8 3.5754 1.5178 -2.2162 10 6 5.6699 1.3491 -1.1673 11 8 6.2806 1.3783 -0.1187 12 7 6.3370 1.2325 -2.3326 13 6 7.7336 1.1446 -2.3335 14 6 8.5625 1.1657 -1.1997 15 6 9.8428 1.0523 -1.6197 16 7 9.8312 0.9718 -2.9671 17 6 11.0070 0.8421 -3.8315 18 6 10.8534 -0.3732 -4.7094 19 1 9.9686 -0.9876 -4.6309 20 6 11.8427 -0.7012 -5.6119 21 7 12.9180 0.0497 -5.7106 22 14 11.6527 -2.2079 -6.6995 23 1 12.2380 -3.3889 -6.0157 24 1 10.2113 -2.4512 -6.9608 25 1 12.3576 -1.9814 -7.9868 26 7 8.4983 1.0281 -3.3941 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8901 34 1 3.6000 1.0386 2.0565 35 1 5.1309 0.8265 1.1736 36 1 5.2776 3.2790 0.8385 37 1 3.7466 3.4912 1.7214 38 1 4.7673 2.4713 3.7377 39 1 6.2985 2.2589 2.8553 40 1 5.6924 3.8956 3.2043 41 1 5.8491 1.2094 -3.1706 42 1 8.2351 1.2529 -0.1742 43 1 10.7193 1.0323 -0.9891 44 1 11.9003 0.7353 -3.2162 45 1 11.0994 1.7313 -4.4550 46 1 13.0168 0.8319 -5.1456 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123820054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:53 Heat of formation + Delta-G solvation = 10.576292 kcal Electronic energy + Delta-G solvation = -27149.619819 eV Core-core repulsion = 23269.569510 eV Total energy + Delta-G solvation = -3880.050309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.31558 -40.41341 -38.64039 -37.12069 -35.04632 -34.42077 -33.69103 -32.44116 -30.98761 -29.50075 -27.72721 -26.83596 -26.20925 -24.34519 -22.92632 -22.18735 -21.95850 -21.02438 -20.08827 -19.46833 -17.81890 -17.26489 -17.21922 -16.55328 -16.19645 -15.81377 -15.30373 -15.12442 -14.86607 -14.67848 -14.30581 -14.01995 -13.80985 -13.60991 -13.41058 -13.31923 -12.63837 -12.55954 -12.46048 -12.35844 -12.32186 -12.16118 -11.79968 -11.74410 -11.51035 -11.26179 -11.17561 -11.04464 -10.98439 -10.78557 -10.53558 -10.18495 -10.06133 -9.41485 -9.06455 -9.00990 -8.60261 -8.31788 -7.64790 -6.60843 -4.35144 1.16669 1.98503 2.56891 2.94739 3.00017 3.35832 3.40477 3.56512 3.58543 3.64993 4.22408 4.39296 4.56012 4.57510 4.69895 4.84841 4.89402 5.03729 5.12703 5.12873 5.19530 5.30251 5.31555 5.39387 5.52308 5.59320 5.64319 5.67103 5.73631 5.78072 5.87595 5.95773 6.01084 6.06871 6.20578 6.27659 6.36744 6.50579 6.69214 6.80034 7.15718 7.22416 7.53367 7.65844 7.75014 7.91106 8.30961 8.43807 8.58181 9.33014 10.76978 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017801 B = 0.002624 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.609272 B =10669.593067 C =11829.868117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.112 3.888 4 N -0.583 5.583 5 C 0.092 3.908 6 C -0.132 4.132 7 C -0.145 4.145 8 C 0.514 3.486 9 O -0.517 6.517 10 C 0.512 3.488 11 O -0.490 6.490 12 N -0.599 5.599 13 C 0.253 3.747 14 C -0.282 4.282 15 C 0.052 3.948 16 N -0.313 5.313 17 C 0.248 3.752 18 C -0.609 4.609 19 H 0.064 0.936 20 C 0.023 3.977 21 N -0.904 5.904 22 Si 1.079 2.921 23 H -0.285 1.285 24 H -0.286 1.286 25 H -0.281 1.281 26 N -0.292 5.292 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.423 0.577 42 H 0.163 0.837 43 H 0.170 0.830 44 H 0.047 0.953 45 H 0.036 0.964 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.402 3.603 17.256 26.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C -0.010 4.010 4 N -0.316 5.316 5 C -0.030 4.030 6 C -0.170 4.170 7 C -0.203 4.203 8 C 0.296 3.704 9 O -0.392 6.392 10 C 0.292 3.708 11 O -0.364 6.364 12 N -0.247 5.247 13 C 0.000 4.000 14 C -0.313 4.313 15 C -0.098 4.098 16 N -0.095 5.095 17 C 0.130 3.870 18 C -0.647 4.647 19 H 0.082 0.918 20 C -0.181 4.181 21 N -0.540 5.540 22 Si 0.906 3.094 23 H -0.212 1.212 24 H -0.212 1.212 25 H -0.207 1.207 26 N -0.123 5.123 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.135 0.865 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.260 0.740 42 H 0.181 0.819 43 H 0.187 0.813 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.424 2.708 14.904 24.633 hybrid contribution -0.946 0.975 1.696 2.173 sum -20.370 3.684 16.601 26.535 Atomic orbital electron populations 1.21685 0.94819 1.02139 1.02002 1.21903 0.96427 0.96767 1.02879 1.21694 0.78007 0.97562 1.03785 1.47841 1.06894 1.70706 1.06141 1.22336 0.98258 0.99001 0.83424 1.21820 1.00090 0.96362 0.98754 1.21630 1.00595 1.01971 0.96103 1.19898 0.87852 0.78259 0.84408 1.90780 1.69654 1.47995 1.30809 1.19955 0.88393 0.78615 0.83811 1.90610 1.68688 1.46971 1.30114 1.42048 1.03561 1.69023 1.10085 1.19021 0.83225 1.04105 0.93629 1.21516 0.90484 1.19590 0.99736 1.22583 0.99223 1.02231 0.85745 1.48868 1.04714 1.51121 1.04797 1.19810 0.78436 0.99205 0.89541 1.22125 1.08449 1.10899 1.23228 0.91751 1.25929 0.92160 1.02886 0.97166 1.70828 1.27796 1.15881 1.39480 0.83386 0.75757 0.74170 0.76090 1.21195 1.21182 1.20680 1.77435 0.88222 1.26786 1.19897 0.92354 0.92309 0.92585 0.91365 0.91619 0.89949 0.89373 0.90766 0.86499 0.91307 0.92628 0.93037 0.91825 0.92695 0.74003 0.81946 0.81306 0.93486 0.94616 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.14 -1.04 6.26 -26.73 -0.17 -1.21 16 3 C 0.11 0.88 5.41 -4.04 -0.02 0.86 16 4 N -0.58 -5.80 2.49 -174.24 -0.43 -6.24 16 5 C 0.09 0.80 4.99 -4.04 -0.02 0.78 16 6 C -0.13 -1.15 5.76 -26.73 -0.15 -1.30 16 7 C -0.15 -1.11 9.91 37.16 0.37 -0.75 16 8 C 0.51 6.62 7.67 -11.64 -0.09 6.53 16 9 O -0.52 -7.64 16.04 5.49 0.09 -7.55 16 10 C 0.51 7.36 7.63 -11.64 -0.09 7.28 16 11 O -0.49 -7.08 8.97 5.47 0.05 -7.03 16 12 N -0.60 -9.77 5.43 -11.58 -0.06 -9.83 16 13 C 0.25 4.99 8.10 -154.54 -1.25 3.74 16 14 C -0.28 -5.22 9.60 -39.82 -0.38 -5.60 16 15 C 0.05 0.99 11.43 -17.24 -0.20 0.79 16 16 N -0.31 -7.16 3.67 -62.56 -0.23 -7.39 16 17 C 0.25 6.18 5.57 -5.19 -0.03 6.15 16 18 C -0.61 -17.00 9.24 -34.44 -0.32 -17.32 16 19 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 20 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 21 N -0.90 -26.17 13.65 55.43 0.76 -25.42 16 22 Si 1.08 24.94 29.90 -169.99 -5.08 19.86 16 23 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 N -0.29 -6.74 12.42 31.41 0.39 -6.35 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 33 H 0.09 0.79 7.37 -51.93 -0.38 0.40 16 34 H 0.07 0.48 8.02 -51.93 -0.42 0.07 16 35 H 0.12 1.22 5.38 -51.93 -0.28 0.94 16 36 H 0.07 0.76 7.05 -51.93 -0.37 0.39 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.42 6.46 8.31 -40.82 -0.34 6.12 16 42 H 0.16 2.74 5.91 -52.48 -0.31 2.43 16 43 H 0.17 2.57 8.06 -52.49 -0.42 2.15 16 44 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 45 H 0.04 0.93 8.00 -51.93 -0.42 0.51 16 46 H 0.27 7.54 7.22 -40.82 -0.29 7.25 16 LS Contribution 383.27 15.07 5.78 5.78 Total: -1.00 -31.83 383.27 -7.90 -39.73 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -7.07 Total: 4.44 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -2.08 Total: 0.01 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.42 Total: -55.23 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: 0.14 Total: -14.58 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.08 Total: 19.86 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.83 -7.90 -39.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123820054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.302 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds