Wall clock time and date at job start Tue Mar 31 2020 13:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47004 * 2 1 4 4 N 1.46498 * 109.46782 * 179.97438 * 3 2 1 5 5 C 1.46501 * 120.00056 * 269.99973 * 4 3 2 6 6 C 1.53008 * 109.46846 * 263.16394 * 5 4 3 7 7 C 1.52999 * 109.46744 * 179.97438 * 6 5 4 8 8 C 1.34781 * 120.00224 * 90.00051 * 4 3 2 9 9 O 1.21359 * 119.99567 * 4.12769 * 8 4 3 10 10 C 1.49336 * 119.99875 * 184.12804 * 8 4 3 11 11 O 1.21383 * 120.00607 * 354.27463 * 10 8 4 12 12 N 1.34780 * 119.99575 * 174.26986 * 10 8 4 13 13 C 1.39940 * 119.99779 * 180.02562 * 12 10 8 14 14 C 1.40458 * 125.98041 * 359.97438 * 13 12 10 15 15 C 1.35214 * 107.86629 * 179.74060 * 14 13 12 16 16 N 1.34988 * 107.87296 * 0.41637 * 15 14 13 17 17 C 1.46505 * 125.96660 * 179.84031 * 16 15 14 18 18 C 1.50706 * 109.46887 * 124.72253 * 17 16 15 19 19 H 1.08001 * 119.99505 * 359.97438 * 18 17 16 20 20 C 1.37872 * 119.99977 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99939 * 359.71703 * 20 18 17 22 22 Si 1.86799 * 120.00037 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.46985 * 269.72128 * 22 20 18 24 24 H 1.48496 * 109.46983 * 29.72289 * 22 20 18 25 25 H 1.48503 * 109.47133 * 149.71819 * 22 20 18 26 26 N 1.31271 * 125.97729 * 179.97438 * 13 12 10 27 27 H 1.09005 * 109.46798 * 60.00516 * 1 2 3 28 28 H 1.09004 * 109.47087 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47348 * 300.00272 * 1 2 3 30 30 H 1.09002 * 109.47067 * 239.99473 * 2 1 3 31 31 H 1.08994 * 109.46668 * 119.99954 * 2 1 3 32 32 H 1.08995 * 109.47290 * 59.99692 * 3 2 1 33 33 H 1.09005 * 109.46921 * 299.99408 * 3 2 1 34 34 H 1.09004 * 109.46994 * 23.15955 * 5 4 3 35 35 H 1.08995 * 109.47735 * 143.16341 * 5 4 3 36 36 H 1.09004 * 109.46966 * 299.99578 * 6 5 4 37 37 H 1.08998 * 109.47476 * 59.99657 * 6 5 4 38 38 H 1.08996 * 109.47449 * 299.99890 * 7 6 5 39 39 H 1.09006 * 109.47105 * 60.00064 * 7 6 5 40 40 H 1.09004 * 109.47097 * 179.97438 * 7 6 5 41 41 H 0.96998 * 120.00457 * 0.02562 * 12 10 8 42 42 H 1.08005 * 126.06453 * 359.97438 * 14 13 12 43 43 H 1.08001 * 126.06030 * 180.26820 * 15 14 13 44 44 H 1.08999 * 109.47358 * 4.72353 * 17 16 15 45 45 H 1.08996 * 109.47264 * 244.71856 * 17 16 15 46 46 H 0.96999 * 120.00181 * 0.28287 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2370 1.4426 1.2697 6 6 4.6406 2.8750 1.6254 7 6 5.4045 2.8752 2.9510 8 6 4.1794 1.4423 -1.1663 9 8 3.5754 1.5178 -2.2162 10 6 5.6699 1.3491 -1.1673 11 8 6.2806 1.3783 -0.1187 12 7 6.3370 1.2325 -2.3326 13 6 7.7336 1.1446 -2.3335 14 6 8.5625 1.1657 -1.1997 15 6 9.8428 1.0523 -1.6197 16 7 9.8312 0.9718 -2.9671 17 6 11.0070 0.8421 -3.8315 18 6 10.8534 -0.3732 -4.7094 19 1 9.9686 -0.9876 -4.6309 20 6 11.8427 -0.7012 -5.6119 21 7 12.9180 0.0497 -5.7106 22 14 11.6527 -2.2079 -6.6995 23 1 12.2380 -3.3889 -6.0157 24 1 10.2113 -2.4512 -6.9608 25 1 12.3576 -1.9814 -7.9868 26 7 8.4983 1.0281 -3.3941 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8901 34 1 3.6000 1.0386 2.0565 35 1 5.1309 0.8265 1.1736 36 1 5.2776 3.2790 0.8385 37 1 3.7466 3.4912 1.7214 38 1 4.7673 2.4713 3.7377 39 1 6.2985 2.2589 2.8553 40 1 5.6924 3.8956 3.2043 41 1 5.8491 1.2094 -3.1706 42 1 8.2351 1.2529 -0.1742 43 1 10.7193 1.0323 -0.9891 44 1 11.9003 0.7353 -3.2162 45 1 11.0994 1.7313 -4.4550 46 1 13.0168 0.8319 -5.1456 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123820054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:52 Heat of formation + Delta-G solvation = -8.341444 kcal Electronic energy + Delta-G solvation = -27150.440154 eV Core-core repulsion = 23269.569510 eV Total energy + Delta-G solvation = -3880.870644 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.59318 -41.75780 -39.79454 -38.04906 -36.46379 -35.58060 -35.07610 -33.15215 -32.75814 -31.09048 -28.79601 -28.00688 -27.37945 -25.64572 -24.58382 -22.99715 -22.80841 -22.34098 -21.45871 -20.62629 -19.27285 -18.86516 -18.39537 -17.90693 -17.30636 -16.93639 -16.58631 -16.21190 -15.93293 -15.67333 -15.58554 -15.36795 -15.18969 -15.01614 -14.35754 -14.24167 -14.12064 -13.95584 -13.80042 -13.30238 -13.17415 -13.03638 -12.99298 -12.80799 -12.60882 -12.37004 -12.27108 -12.17626 -12.02924 -11.99535 -11.68678 -11.62563 -11.52893 -11.03013 -10.70080 -10.49331 -9.94582 -9.84839 -9.28978 -8.79502 -6.57064 0.01861 0.81573 1.05204 1.49615 1.57327 1.68107 1.70724 1.78399 2.20234 2.37708 2.47619 2.99981 3.04958 3.80450 3.92861 3.98002 4.04512 4.10175 4.18737 4.32635 4.44351 4.49252 4.52281 4.57363 4.61537 4.71454 4.73016 4.77370 4.81067 4.87961 4.89854 5.04778 5.14258 5.16463 5.19948 5.28128 5.37532 5.44463 5.50284 5.52589 5.71010 5.80560 5.89895 6.01266 6.24886 6.39856 6.47343 6.73468 6.87386 7.18038 8.57508 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017801 B = 0.002624 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.609272 B =10669.593067 C =11829.868117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C 0.108 3.892 4 N -0.570 5.570 5 C 0.090 3.910 6 C -0.128 4.128 7 C -0.142 4.142 8 C 0.515 3.485 9 O -0.542 6.542 10 C 0.513 3.487 11 O -0.487 6.487 12 N -0.604 5.604 13 C 0.262 3.738 14 C -0.281 4.281 15 C 0.058 3.942 16 N -0.340 5.340 17 C 0.259 3.741 18 C -0.622 4.622 19 H 0.044 0.956 20 C -0.018 4.018 21 N -0.923 5.923 22 Si 1.121 2.879 23 H -0.267 1.267 24 H -0.282 1.282 25 H -0.275 1.275 26 N -0.344 5.344 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.040 0.960 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.425 0.575 42 H 0.182 0.818 43 H 0.207 0.793 44 H 0.059 0.941 45 H 0.017 0.983 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.001 3.187 19.687 29.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.176 4.176 3 C -0.013 4.013 4 N -0.301 5.301 5 C -0.031 4.031 6 C -0.167 4.167 7 C -0.200 4.200 8 C 0.296 3.704 9 O -0.420 6.420 10 C 0.295 3.705 11 O -0.360 6.360 12 N -0.254 5.254 13 C 0.008 3.992 14 C -0.311 4.311 15 C -0.090 4.090 16 N -0.122 5.122 17 C 0.139 3.861 18 C -0.660 4.660 19 H 0.062 0.938 20 C -0.218 4.218 21 N -0.559 5.559 22 Si 0.942 3.058 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.200 1.200 26 N -0.175 5.175 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.133 0.867 33 H 0.095 0.905 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.059 0.941 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.263 0.737 42 H 0.199 0.801 43 H 0.224 0.776 44 H 0.076 0.924 45 H 0.035 0.965 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.052 2.308 17.411 27.416 hybrid contribution -0.583 1.165 1.118 1.716 sum -21.635 3.473 18.528 28.696 Atomic orbital electron populations 1.21666 0.93469 1.02538 1.02648 1.21863 0.97551 0.96054 1.02109 1.21937 0.76287 0.98233 1.04829 1.47993 1.07907 1.68637 1.05584 1.22431 0.98304 0.98951 0.83432 1.21777 1.00256 0.96229 0.98402 1.21606 1.00329 1.02013 0.96035 1.19614 0.86844 0.78802 0.85137 1.90776 1.69623 1.49752 1.31812 1.20362 0.89250 0.77760 0.83149 1.90605 1.69078 1.46382 1.29915 1.42195 1.02322 1.69776 1.11068 1.19341 0.84546 1.01925 0.93379 1.21775 0.90092 1.19151 1.00101 1.23274 1.00907 1.00267 0.84548 1.48630 1.04187 1.53563 1.05819 1.19459 0.79858 0.97155 0.89604 1.22302 1.07706 1.11764 1.24225 0.93807 1.27237 0.91589 1.04871 0.98099 1.70918 1.28562 1.16337 1.40055 0.82859 0.76047 0.71923 0.74990 1.19178 1.20790 1.20048 1.77341 0.88814 1.29509 1.21880 0.92835 0.92081 0.90813 0.93914 0.90604 0.86686 0.90527 0.87446 0.88170 0.94087 0.91237 0.91037 0.93036 0.92553 0.73728 0.80125 0.77626 0.92370 0.96534 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 71.98 0.71 -0.65 16 2 C -0.14 -1.75 6.26 30.60 0.19 -1.56 16 3 C 0.11 1.44 5.41 86.38 0.47 1.91 16 4 N -0.57 -10.31 2.49 -823.51 -2.05 -12.36 16 5 C 0.09 1.33 4.99 86.38 0.43 1.76 16 6 C -0.13 -1.94 5.76 30.60 0.18 -1.76 16 7 C -0.14 -1.83 9.91 71.98 0.71 -1.12 16 8 C 0.51 13.00 7.67 87.23 0.67 13.67 16 9 O -0.54 -16.11 16.04 -3.28 -0.05 -16.16 16 10 C 0.51 14.62 7.63 87.23 0.67 15.28 16 11 O -0.49 -13.61 8.97 -3.35 -0.03 -13.64 16 12 N -0.60 -19.98 5.43 -308.90 -1.68 -21.65 16 13 C 0.26 10.43 8.10 133.40 1.08 11.52 16 14 C -0.28 -10.13 9.60 22.11 0.21 -9.92 16 15 C 0.06 2.16 11.43 83.51 0.95 3.12 16 16 N -0.34 -15.78 3.67 -351.83 -1.29 -17.07 16 17 C 0.26 13.19 5.57 85.63 0.48 13.67 16 18 C -0.62 -35.48 9.24 25.60 0.24 -35.25 16 19 H 0.04 2.63 7.81 -2.91 -0.02 2.61 16 20 C -0.02 -1.02 5.46 84.65 0.46 -0.55 16 21 N -0.92 -53.85 13.65 21.45 0.29 -53.56 16 22 Si 1.12 50.18 29.90 68.60 2.05 52.23 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 25 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 26 N -0.34 -16.31 12.42 -54.53 -0.68 -16.99 16 27 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.12 0.84 8.07 -2.39 -0.02 0.82 16 33 H 0.08 1.26 7.37 -2.38 -0.02 1.24 16 34 H 0.11 0.94 8.02 -2.38 -0.02 0.92 16 35 H 0.10 1.89 5.38 -2.43 -0.01 1.88 16 36 H 0.04 0.85 7.05 -2.38 -0.02 0.84 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.42 13.46 8.31 -92.71 -0.77 12.69 16 42 H 0.18 5.80 5.91 -2.91 -0.02 5.78 16 43 H 0.21 5.81 8.06 -2.91 -0.02 5.79 16 44 H 0.06 2.81 7.94 -2.39 -0.02 2.79 16 45 H 0.02 0.90 8.00 -2.39 -0.02 0.88 16 46 H 0.26 15.06 7.22 -92.71 -0.67 14.39 16 Total: -1.00 -70.09 383.27 4.34 -65.75 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.32 Total: 23.33 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 7.45 Total: 10.12 kcal Atomic # 7 Polarization: -116.23 SS G_CDS: -5.40 Total: -121.63 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.08 Total: -29.80 kcal Atomic # 14 Polarization: 50.18 SS G_CDS: 2.05 Total: 52.23 kcal Total: -70.09 4.34 -65.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123820054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.408 kcal (2) G-P(sol) polarization free energy of solvation -70.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds