Wall clock time and date at job start Tue Mar 31 2020 12:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47102 * 2 1 4 4 H 1.08993 * 109.46955 * 55.00306 * 3 2 1 5 5 C 1.50698 * 109.47184 * 175.00464 * 3 2 1 6 6 H 1.07993 * 120.00472 * 119.99561 * 5 3 2 7 7 C 1.37884 * 119.99909 * 299.99693 * 5 3 2 8 8 N 1.31522 * 119.99817 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00071 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46971 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46790 * 119.99973 * 9 7 5 12 12 H 1.48501 * 109.47046 * 239.99648 * 9 7 5 13 13 N 1.46500 * 109.46998 * 295.00080 * 3 2 1 14 14 C 1.34773 * 119.99910 * 84.99768 * 13 3 2 15 15 O 1.21355 * 120.00412 * 0.02562 * 14 13 3 16 16 C 1.49335 * 119.99910 * 180.02562 * 14 13 3 17 17 O 1.21401 * 119.99626 * 0.02562 * 16 14 13 18 18 N 1.34773 * 119.99910 * 180.02562 * 16 14 13 19 19 C 1.40480 * 120.00008 * 179.97438 * 18 16 14 20 20 C 1.40342 * 126.11426 * 359.69517 * 19 18 16 21 21 N 1.30827 * 108.20929 * 179.87251 * 20 19 18 22 22 N 1.40050 * 108.36325 * 0.38423 * 21 20 19 23 23 C 1.46503 * 125.99197 * 179.73051 * 22 21 20 24 24 C 1.53004 * 109.47413 * 305.02444 * 23 22 21 25 25 C 1.52994 * 109.47116 * 64.99715 * 24 23 22 26 26 C 1.53000 * 109.47186 * 185.00098 * 24 23 22 27 27 C 1.35222 * 108.01684 * 359.75333 * 22 21 20 28 28 H 1.09006 * 109.46822 * 299.99923 * 1 2 3 29 29 H 1.08997 * 109.47474 * 60.00037 * 1 2 3 30 30 H 1.09002 * 109.46922 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47145 * 239.99763 * 2 1 3 32 32 H 1.09007 * 109.47521 * 119.99769 * 2 1 3 33 33 H 0.96991 * 120.00052 * 179.97438 * 8 7 5 34 34 H 0.97003 * 119.99995 * 265.00643 * 13 3 2 35 35 H 0.97003 * 120.00095 * 0.02562 * 18 16 14 36 36 H 1.08002 * 125.89263 * 359.97438 * 20 19 18 37 37 H 1.09003 * 109.47327 * 65.02568 * 23 22 21 38 38 H 1.09000 * 109.46933 * 185.02271 * 23 22 21 39 39 H 1.09005 * 109.46578 * 304.99964 * 24 23 22 40 40 H 1.09008 * 109.47353 * 300.00679 * 25 24 23 41 41 H 1.09003 * 109.46995 * 59.99873 * 25 24 23 42 42 H 1.08994 * 109.47737 * 180.02562 * 25 24 23 43 43 H 1.08998 * 109.47248 * 59.99550 * 26 24 23 44 44 H 1.09002 * 109.47150 * 179.97438 * 26 24 23 45 45 H 1.08997 * 109.46996 * 299.99664 * 26 24 23 46 46 H 1.08000 * 126.18236 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1237 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 3.4063 0.3367 2.1728 9 14 6.0050 0.8813 1.3816 10 1 6.5986 1.5474 0.1946 11 1 6.3990 1.6169 2.6100 12 1 6.4971 -0.5174 1.4629 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3398 2.6326 -0.4335 16 6 0.0398 3.3315 -2.6432 17 8 0.8148 3.3628 -3.5771 18 7 -1.1774 3.8988 -2.7581 19 6 -1.5490 4.5268 -3.9585 20 6 -0.7566 4.6434 -5.1109 21 7 -1.4458 5.2874 -6.0175 22 7 -2.6953 5.6113 -5.4742 23 6 -3.7683 6.3390 -6.1565 24 6 -3.2308 7.6759 -6.6712 25 6 -2.1698 7.4201 -7.7434 26 6 -4.3784 8.4893 -7.2730 27 6 -2.7377 5.1350 -4.2094 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0617 2.9494 34 1 2.2718 2.1231 -1.9978 35 1 -1.7965 3.8741 -2.0117 36 1 0.2481 4.2653 -5.2294 37 1 -4.1326 5.7465 -6.9958 38 1 -4.5853 6.5205 -5.4582 39 1 -2.7862 8.2309 -5.8451 40 1 -1.3522 6.8405 -7.3146 41 1 -2.6144 6.8650 -8.5694 42 1 -1.7865 8.3724 -8.1098 43 1 -5.1343 8.6714 -6.5091 44 1 -3.9956 9.4419 -7.6393 45 1 -4.8230 7.9343 -8.0990 46 1 -3.5668 5.2219 -3.5227 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128169650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:05 Heat of formation + Delta-G solvation = 2.863609 kcal Electronic energy + Delta-G solvation = -26867.959919 eV Core-core repulsion = 22987.575163 eV Total energy + Delta-G solvation = -3880.384756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.56831 -40.06079 -38.18177 -36.75666 -35.44128 -34.51608 -32.39422 -32.04211 -30.97825 -29.49116 -27.44554 -27.31811 -26.47198 -24.42538 -22.91316 -21.95339 -21.07263 -20.75248 -19.84455 -19.40882 -18.24874 -17.59839 -16.35579 -16.17373 -15.83995 -15.61878 -15.25327 -15.13965 -15.06559 -14.36623 -14.15971 -14.02470 -13.60406 -13.34964 -13.17801 -12.93432 -12.74506 -12.72775 -12.43621 -12.09975 -11.83166 -11.59763 -11.34926 -11.31482 -11.23105 -11.13231 -10.94552 -10.85485 -10.78915 -10.51983 -10.33597 -10.26073 -9.69270 -9.49357 -9.12275 -9.01447 -8.56256 -8.02685 -7.80577 -6.17072 -4.26399 1.47658 1.95844 2.17957 2.83841 2.86208 3.23341 3.31672 3.35623 3.80136 4.12384 4.19862 4.32309 4.35741 4.53626 4.67976 4.84492 4.95650 5.03384 5.14080 5.15974 5.18334 5.32623 5.41298 5.44416 5.54413 5.62298 5.72180 5.89751 6.06128 6.25096 6.32008 6.37271 6.56071 6.76687 6.82813 6.95753 7.03808 7.16429 7.24493 7.28297 7.49370 7.58765 7.65713 7.79699 8.01225 8.09142 8.47062 8.64173 8.87981 9.40412 10.88360 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.028415 B = 0.002244 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.146642 B =12475.424832 C =13081.123129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.535 4.535 6 H 0.065 0.935 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.903 3.097 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.667 5.667 14 C 0.497 3.503 15 O -0.532 6.532 16 C 0.508 3.492 17 O -0.515 6.515 18 N -0.620 5.620 19 C 0.002 3.998 20 C 0.051 3.949 21 N -0.282 5.282 22 N -0.367 5.367 23 C 0.143 3.857 24 C -0.108 4.108 25 C -0.159 4.159 26 C -0.146 4.146 27 C 0.019 3.981 28 H 0.051 0.949 29 H 0.035 0.965 30 H 0.026 0.974 31 H 0.035 0.965 32 H 0.103 0.897 33 H 0.265 0.735 34 H 0.402 0.598 35 H 0.421 0.579 36 H 0.207 0.793 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.697 11.726 -14.929 24.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.574 4.574 6 H 0.083 0.917 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.316 5.316 14 C 0.276 3.724 15 O -0.411 6.411 16 C 0.290 3.710 17 O -0.390 6.390 18 N -0.267 5.267 19 C -0.102 4.102 20 C -0.135 4.135 21 N -0.104 5.104 22 N -0.152 5.152 23 C 0.022 3.978 24 C -0.127 4.127 25 C -0.217 4.217 26 C -0.203 4.203 27 C -0.129 4.129 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.121 0.879 33 H 0.075 0.925 34 H 0.237 0.763 35 H 0.258 0.742 36 H 0.223 0.777 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -15.728 12.099 -15.925 25.443 hybrid contribution 0.793 -0.355 1.063 1.373 sum -14.935 11.744 -14.861 24.121 Atomic orbital electron populations 1.21855 0.98315 0.98397 1.01042 1.21966 0.92650 0.99417 1.02771 1.19015 0.94780 0.89385 0.80163 0.92750 1.21253 0.90345 1.39241 1.06519 0.91682 1.24881 0.98824 0.94644 0.95273 1.69893 1.35157 1.37522 1.09365 0.86357 0.84569 0.77816 0.78191 1.19605 1.20864 1.20831 1.46445 1.13452 1.52528 1.19190 1.19552 0.84476 0.81405 0.86999 1.90736 1.51227 1.59583 1.39519 1.20844 0.81419 0.79166 0.89542 1.90604 1.50884 1.57430 1.40092 1.42498 1.16693 1.53693 1.13809 1.17783 0.95370 1.07442 0.89643 1.24618 1.01363 0.98108 0.89446 1.77245 0.91363 1.19498 1.22293 1.48211 1.12910 1.44336 1.09720 1.21837 0.86125 0.92303 0.97579 1.21406 0.97268 0.94484 0.99548 1.22089 0.99924 1.01728 0.97937 1.21796 0.97553 1.00099 1.00899 1.21802 0.99236 1.02702 0.89144 0.92959 0.94566 0.95512 0.94646 0.87865 0.92522 0.76346 0.74172 0.77671 0.89756 0.88710 0.90691 0.89143 0.92996 0.93195 0.92493 0.91940 0.92287 0.80593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.51 37.16 0.32 -2.62 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.53 2.24 -69.08 -0.15 6.37 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.54 -13.89 8.73 -34.44 -0.30 -14.19 16 6 H 0.07 1.65 7.74 -52.49 -0.41 1.24 16 7 C 0.07 1.76 5.29 -17.81 -0.09 1.67 16 8 N -0.88 -24.03 11.29 55.43 0.63 -23.40 16 9 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.67 -13.92 5.01 -55.40 -0.28 -14.20 16 14 C 0.50 9.61 6.45 -11.64 -0.08 9.53 16 15 O -0.53 -11.08 13.61 5.49 0.07 -11.01 16 16 C 0.51 8.48 7.86 -11.64 -0.09 8.39 16 17 O -0.52 -9.14 13.63 5.45 0.07 -9.07 16 18 N -0.62 -8.47 5.45 -10.48 -0.06 -8.52 16 19 C 0.00 0.03 6.90 -83.96 -0.58 -0.55 16 20 C 0.05 0.72 10.84 -17.19 -0.19 0.53 16 21 N -0.28 -3.64 9.61 30.72 0.30 -3.34 16 22 N -0.37 -3.74 3.69 -61.15 -0.23 -3.97 16 23 C 0.14 0.95 5.96 -4.04 -0.02 0.92 16 24 C -0.11 -0.73 3.12 -90.62 -0.28 -1.01 16 25 C -0.16 -1.33 8.92 37.15 0.33 -1.00 16 26 C -0.15 -0.68 9.19 37.16 0.34 -0.34 16 27 C 0.02 0.19 11.49 -16.91 -0.19 0.00 16 28 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 29 H 0.04 0.74 5.65 -51.93 -0.29 0.45 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 33 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.40 7.89 8.01 -40.82 -0.33 7.57 16 35 H 0.42 4.99 8.29 -40.82 -0.34 4.65 16 36 H 0.21 3.08 5.92 -52.49 -0.31 2.77 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.38 8.07 -51.93 -0.42 -0.03 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.98 5.35 -51.92 -0.28 0.70 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.18 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 374.16 15.07 5.64 5.64 Total: -1.00 -29.81 374.16 -6.86 -36.67 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -6.85 Total: 11.30 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -1.14 Total: 4.52 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 0.36 Total: -53.43 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: 0.15 Total: -20.08 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.81 -6.86 -36.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128169650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.529 kcal (2) G-P(sol) polarization free energy of solvation -29.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds