Wall clock time and date at job start Tue Mar 31 2020 12:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47102 * 2 1 4 4 H 1.08993 * 109.46955 * 55.00306 * 3 2 1 5 5 C 1.50698 * 109.47184 * 175.00464 * 3 2 1 6 6 H 1.07993 * 120.00472 * 119.99561 * 5 3 2 7 7 C 1.37884 * 119.99909 * 299.99693 * 5 3 2 8 8 N 1.31522 * 119.99817 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00071 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46971 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46790 * 119.99973 * 9 7 5 12 12 H 1.48501 * 109.47046 * 239.99648 * 9 7 5 13 13 N 1.46500 * 109.46998 * 295.00080 * 3 2 1 14 14 C 1.34773 * 119.99910 * 84.99768 * 13 3 2 15 15 O 1.21355 * 120.00412 * 0.02562 * 14 13 3 16 16 C 1.49335 * 119.99910 * 180.02562 * 14 13 3 17 17 O 1.21401 * 119.99626 * 0.02562 * 16 14 13 18 18 N 1.34773 * 119.99910 * 180.02562 * 16 14 13 19 19 C 1.40480 * 120.00008 * 179.97438 * 18 16 14 20 20 C 1.40342 * 126.11426 * 359.69517 * 19 18 16 21 21 N 1.30827 * 108.20929 * 179.87251 * 20 19 18 22 22 N 1.40050 * 108.36325 * 0.38423 * 21 20 19 23 23 C 1.46503 * 125.99197 * 179.73051 * 22 21 20 24 24 C 1.53004 * 109.47413 * 305.02444 * 23 22 21 25 25 C 1.52994 * 109.47116 * 64.99715 * 24 23 22 26 26 C 1.53000 * 109.47186 * 185.00098 * 24 23 22 27 27 C 1.35222 * 108.01684 * 359.75333 * 22 21 20 28 28 H 1.09006 * 109.46822 * 299.99923 * 1 2 3 29 29 H 1.08997 * 109.47474 * 60.00037 * 1 2 3 30 30 H 1.09002 * 109.46922 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47145 * 239.99763 * 2 1 3 32 32 H 1.09007 * 109.47521 * 119.99769 * 2 1 3 33 33 H 0.96991 * 120.00052 * 179.97438 * 8 7 5 34 34 H 0.97003 * 119.99995 * 265.00643 * 13 3 2 35 35 H 0.97003 * 120.00095 * 0.02562 * 18 16 14 36 36 H 1.08002 * 125.89263 * 359.97438 * 20 19 18 37 37 H 1.09003 * 109.47327 * 65.02568 * 23 22 21 38 38 H 1.09000 * 109.46933 * 185.02271 * 23 22 21 39 39 H 1.09005 * 109.46578 * 304.99964 * 24 23 22 40 40 H 1.09008 * 109.47353 * 300.00679 * 25 24 23 41 41 H 1.09003 * 109.46995 * 59.99873 * 25 24 23 42 42 H 1.08994 * 109.47737 * 180.02562 * 25 24 23 43 43 H 1.08998 * 109.47248 * 59.99550 * 26 24 23 44 44 H 1.09002 * 109.47150 * 179.97438 * 26 24 23 45 45 H 1.08997 * 109.46996 * 299.99664 * 26 24 23 46 46 H 1.08000 * 126.18236 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1237 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 3.4063 0.3367 2.1728 9 14 6.0050 0.8813 1.3816 10 1 6.5986 1.5474 0.1946 11 1 6.3990 1.6169 2.6100 12 1 6.4971 -0.5174 1.4629 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3398 2.6326 -0.4335 16 6 0.0398 3.3315 -2.6432 17 8 0.8148 3.3628 -3.5771 18 7 -1.1774 3.8988 -2.7581 19 6 -1.5490 4.5268 -3.9585 20 6 -0.7566 4.6434 -5.1109 21 7 -1.4458 5.2874 -6.0175 22 7 -2.6953 5.6113 -5.4742 23 6 -3.7683 6.3390 -6.1565 24 6 -3.2308 7.6759 -6.6712 25 6 -2.1698 7.4201 -7.7434 26 6 -4.3784 8.4893 -7.2730 27 6 -2.7377 5.1350 -4.2094 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0617 2.9494 34 1 2.2718 2.1231 -1.9978 35 1 -1.7965 3.8741 -2.0117 36 1 0.2481 4.2653 -5.2294 37 1 -4.1326 5.7465 -6.9958 38 1 -4.5853 6.5205 -5.4582 39 1 -2.7862 8.2309 -5.8451 40 1 -1.3522 6.8405 -7.3146 41 1 -2.6144 6.8650 -8.5694 42 1 -1.7865 8.3724 -8.1098 43 1 -5.1343 8.6714 -6.5091 44 1 -3.9956 9.4419 -7.6393 45 1 -4.8230 7.9343 -8.0990 46 1 -3.5668 5.2219 -3.5227 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128169650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:05 Heat of formation + Delta-G solvation = -16.956362 kcal Electronic energy + Delta-G solvation = -26868.819378 eV Core-core repulsion = 22987.575163 eV Total energy + Delta-G solvation = -3881.244215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.53491 -41.43583 -39.63502 -37.42498 -37.13430 -35.74624 -34.26960 -32.87068 -32.76370 -30.43394 -29.15053 -27.99244 -27.31784 -25.87676 -24.64948 -22.94828 -22.21050 -21.65397 -21.26397 -20.79960 -19.66949 -18.58954 -18.03653 -17.56573 -17.10136 -16.87555 -16.50482 -16.36265 -15.93112 -15.89087 -15.39395 -15.06965 -14.92745 -14.60256 -14.38236 -13.93366 -13.82751 -13.74871 -13.47057 -13.20291 -13.18920 -12.94895 -12.92172 -12.71113 -12.53173 -12.49573 -12.11397 -12.09206 -12.02650 -11.77391 -11.66004 -11.57681 -11.32238 -11.07287 -10.59360 -10.48247 -10.34829 -9.80009 -8.79212 -8.17444 -6.33820 0.27622 0.91388 1.25386 1.44545 1.46911 1.58072 1.71422 1.74168 2.38111 2.41753 2.89097 3.12470 3.54788 3.60536 3.81690 3.89058 4.06619 4.20207 4.35877 4.49567 4.51161 4.51483 4.57790 4.65964 4.73944 4.76476 4.81831 4.97293 5.02886 5.05116 5.08990 5.24484 5.25104 5.39896 5.39998 5.42887 5.48678 5.58431 5.71011 5.77659 5.82588 6.04492 6.12886 6.14516 6.57098 6.69686 6.72100 6.91641 7.16035 7.38333 8.87882 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.028415 B = 0.002244 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.146642 B =12475.424832 C =13081.123129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C 0.276 3.724 4 H 0.016 0.984 5 C -0.552 4.552 6 H 0.067 0.933 7 C 0.021 3.979 8 N -0.909 5.909 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.278 1.278 13 N -0.672 5.672 14 C 0.499 3.501 15 O -0.547 6.547 16 C 0.511 3.489 17 O -0.531 6.531 18 N -0.599 5.599 19 C -0.034 4.034 20 C 0.030 3.970 21 N -0.299 5.299 22 N -0.359 5.359 23 C 0.132 3.868 24 C -0.104 4.104 25 C -0.160 4.160 26 C -0.140 4.140 27 C 0.051 3.949 28 H 0.036 0.964 29 H 0.041 0.959 30 H 0.048 0.952 31 H 0.039 0.961 32 H 0.078 0.922 33 H 0.267 0.733 34 H 0.408 0.592 35 H 0.431 0.569 36 H 0.187 0.813 37 H 0.093 0.907 38 H 0.133 0.867 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.769 12.735 -15.868 27.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.163 4.163 3 C 0.174 3.826 4 H 0.034 0.966 5 C -0.590 4.590 6 H 0.085 0.915 7 C -0.180 4.180 8 N -0.547 5.547 9 Si 0.793 3.207 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.203 1.203 13 N -0.322 5.322 14 C 0.279 3.721 15 O -0.427 6.427 16 C 0.293 3.707 17 O -0.407 6.407 18 N -0.246 5.246 19 C -0.138 4.138 20 C -0.156 4.156 21 N -0.123 5.123 22 N -0.143 5.143 23 C 0.013 3.987 24 C -0.123 4.123 25 C -0.218 4.218 26 C -0.198 4.198 27 C -0.098 4.098 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.243 0.757 35 H 0.270 0.730 36 H 0.204 0.796 37 H 0.112 0.888 38 H 0.151 0.849 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -17.844 13.141 -16.907 27.874 hybrid contribution 1.287 -0.552 1.272 1.892 sum -16.557 12.588 -15.635 26.020 Atomic orbital electron populations 1.21706 0.96477 0.99659 1.00489 1.21823 0.94247 0.98575 1.01628 1.18630 0.94009 0.89582 0.80407 0.96639 1.21557 0.91324 1.39295 1.06793 0.91462 1.25679 1.03106 0.94267 0.94958 1.70015 1.36858 1.38059 1.09798 0.85354 0.79357 0.77868 0.78114 1.19006 1.20749 1.20338 1.46220 1.14468 1.53180 1.18286 1.19959 0.83597 0.80661 0.87877 1.90719 1.51512 1.59943 1.40504 1.20158 0.82546 0.79910 0.88106 1.90620 1.51643 1.58441 1.40037 1.42237 1.15476 1.52376 1.14517 1.17944 0.96823 1.09978 0.89095 1.24439 1.01310 0.99156 0.90652 1.77268 0.92730 1.19820 1.22437 1.48653 1.12523 1.43178 1.09901 1.22278 0.85804 0.91754 0.98853 1.21362 0.97480 0.94852 0.98615 1.22068 0.99782 1.01364 0.98556 1.21751 0.96940 0.99590 1.01488 1.22465 0.98889 0.99344 0.89110 0.94463 0.94025 0.93298 0.94266 0.90332 0.92405 0.75679 0.73047 0.79597 0.88836 0.84922 0.91807 0.91770 0.92706 0.93087 0.90866 0.92180 0.91594 0.76045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.33 8.51 71.98 0.61 -4.72 16 2 C -0.12 -5.93 5.45 30.60 0.17 -5.76 16 3 C 0.28 13.85 2.24 44.25 0.10 13.95 16 4 H 0.02 0.90 7.58 -2.39 -0.02 0.89 16 5 C -0.55 -29.14 8.73 25.60 0.22 -28.92 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 1.10 5.29 84.66 0.45 1.54 16 8 N -0.91 -50.52 11.29 21.45 0.24 -50.28 16 9 Si 0.97 42.09 29.54 68.60 2.03 44.11 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 13 N -0.67 -28.65 5.01 -447.56 -2.24 -30.89 16 14 C 0.50 19.49 6.45 87.23 0.56 20.06 16 15 O -0.55 -22.98 13.61 -3.26 -0.04 -23.02 16 16 C 0.51 17.09 7.86 87.23 0.69 17.78 16 17 O -0.53 -19.22 13.63 -3.41 -0.05 -19.26 16 18 N -0.60 -15.72 5.45 -305.41 -1.67 -17.39 16 19 C -0.03 -0.84 6.90 37.71 0.26 -0.58 16 20 C 0.03 0.85 10.84 85.35 0.93 1.77 16 21 N -0.30 -7.58 9.61 -56.71 -0.54 -8.12 16 22 N -0.36 -6.37 3.69 -347.37 -1.28 -7.65 16 23 C 0.13 1.28 5.96 86.38 0.52 1.79 16 24 C -0.10 -1.15 3.12 -10.79 -0.03 -1.19 16 25 C -0.16 -2.53 8.92 71.98 0.64 -1.88 16 26 C -0.14 -0.88 9.19 71.98 0.66 -0.22 16 27 C 0.05 0.85 11.49 83.62 0.96 1.81 16 28 H 0.04 1.66 7.85 -2.38 -0.02 1.64 16 29 H 0.04 1.69 5.65 -2.39 -0.01 1.67 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.08 4.18 5.95 -2.38 -0.01 4.17 16 33 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 34 H 0.41 16.37 8.01 -92.71 -0.74 15.63 16 35 H 0.43 9.45 8.29 -92.71 -0.77 8.68 16 36 H 0.19 5.91 5.92 -2.91 -0.02 5.89 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.13 0.34 8.07 -2.39 -0.02 0.33 16 39 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 40 H 0.06 1.39 5.35 -2.38 -0.01 1.38 16 41 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 44 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 46 H 0.22 1.50 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -66.68 374.16 2.68 -64.00 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: -0.50 Total: 33.07 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 6.73 Total: 15.44 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -5.49 Total: -114.33 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -0.09 Total: -42.28 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Total: -66.68 2.68 -64.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128169650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.047 kcal (2) G-P(sol) polarization free energy of solvation -66.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds