Wall clock time and date at job start Tue Mar 31 2020 12:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46897 * 2 1 4 4 H 1.08997 * 109.46769 * 305.00011 * 3 2 1 5 5 C 1.50700 * 109.46781 * 185.00265 * 3 2 1 6 6 H 1.08006 * 119.99723 * 240.00113 * 5 3 2 7 7 C 1.37878 * 120.00527 * 59.99960 * 5 3 2 8 8 N 1.31515 * 119.99461 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00209 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47170 * 60.00326 * 9 7 5 11 11 H 1.48498 * 109.46932 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47162 * 300.00069 * 9 7 5 13 13 N 1.46494 * 109.47118 * 65.00507 * 3 2 1 14 14 C 1.34784 * 119.99635 * 274.99773 * 13 3 2 15 15 O 1.21359 * 119.99960 * 359.97438 * 14 13 3 16 16 C 1.49323 * 119.99724 * 179.97438 * 14 13 3 17 17 O 1.21404 * 120.00413 * 0.02562 * 16 14 13 18 18 N 1.34774 * 120.00143 * 179.97438 * 16 14 13 19 19 C 1.40481 * 120.00378 * 180.02562 * 18 16 14 20 20 C 1.40335 * 126.11424 * 0.02562 * 19 18 16 21 21 N 1.30824 * 108.20937 * 180.02562 * 20 19 18 22 22 N 1.40055 * 108.36778 * 359.97438 * 21 20 19 23 23 C 1.46504 * 125.99584 * 180.02562 * 22 21 20 24 24 C 1.52990 * 109.47199 * 304.97976 * 23 22 21 25 25 C 1.53003 * 109.47396 * 65.00073 * 24 23 22 26 26 C 1.53000 * 109.47061 * 184.99894 * 24 23 22 27 27 C 1.35230 * 108.00883 * 359.74059 * 22 21 20 28 28 H 1.09002 * 109.46940 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46957 * 299.99648 * 1 2 3 30 30 H 1.08997 * 109.47207 * 59.99863 * 1 2 3 31 31 H 1.09002 * 109.46957 * 240.00352 * 2 1 3 32 32 H 1.08997 * 109.47207 * 120.00137 * 2 1 3 33 33 H 0.96997 * 119.99851 * 179.97438 * 8 7 5 34 34 H 0.96995 * 120.00292 * 95.27206 * 13 3 2 35 35 H 0.97004 * 120.00141 * 359.97438 * 18 16 14 36 36 H 1.08000 * 125.89370 * 0.02562 * 20 19 18 37 37 H 1.08998 * 109.46724 * 64.98071 * 23 22 21 38 38 H 1.08995 * 109.46810 * 184.97881 * 23 22 21 39 39 H 1.09000 * 109.47421 * 304.99838 * 24 23 22 40 40 H 1.08997 * 109.47659 * 179.97438 * 25 24 23 41 41 H 1.09007 * 109.46758 * 299.99791 * 25 24 23 42 42 H 1.09000 * 109.47027 * 59.99524 * 25 24 23 43 43 H 1.08996 * 109.47388 * 60.00262 * 26 24 23 44 44 H 1.09005 * 109.46867 * 179.97438 * 26 24 23 45 45 H 1.09004 * 109.47056 * 299.99753 * 26 24 23 46 46 H 1.08004 * 126.17856 * 180.26212 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8813 -1.3819 10 1 6.5975 0.1473 -0.2350 11 1 6.3977 0.2179 -2.6510 12 1 6.4994 2.2816 -1.3822 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3398 2.6327 0.4335 16 6 0.0399 3.3314 2.6431 17 8 0.8152 3.3636 3.5768 18 7 -1.1772 3.8988 2.7582 19 6 -1.5488 4.5268 3.9586 20 6 -0.7584 4.6386 5.1128 21 7 -1.4460 5.2862 6.0180 22 7 -2.6956 5.6101 5.4749 23 6 -3.7690 6.3370 6.1576 24 6 -4.1092 5.6292 7.4705 25 6 -2.9076 5.7009 8.4149 26 6 -5.3118 6.3145 8.1225 27 6 -2.7353 5.1399 4.2076 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.8292 -0.0611 -2.9498 34 1 2.2734 2.1266 1.9964 35 1 -1.7963 3.8741 2.0119 36 1 0.2444 4.2561 5.2330 37 1 -3.4416 7.3551 6.3678 38 1 -4.6524 6.3637 5.5197 39 1 -4.3510 4.5857 7.2688 40 1 -3.1501 5.1971 9.3506 41 1 -2.0508 5.2126 7.9504 42 1 -2.6658 6.7444 8.6167 43 1 -6.1679 6.2634 7.4499 44 1 -5.5545 5.8099 9.0578 45 1 -5.0700 7.3580 8.3244 46 1 -3.5621 5.2322 3.5189 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128169869.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:08 Heat of formation + Delta-G solvation = 2.960283 kcal Electronic energy + Delta-G solvation = -26872.873730 eV Core-core repulsion = 22992.493166 eV Total energy + Delta-G solvation = -3880.380564 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.56756 -40.05997 -38.18075 -36.75840 -35.43989 -34.51522 -32.39262 -32.04229 -30.97743 -29.49065 -27.44635 -27.31589 -26.47219 -24.42427 -22.91011 -21.95389 -21.07243 -20.75318 -19.84307 -19.40732 -18.24829 -17.59770 -16.35392 -16.17879 -15.85156 -15.50013 -15.42828 -15.08194 -15.03203 -14.36517 -14.23068 -13.95730 -13.62963 -13.29910 -13.21977 -12.93661 -12.73780 -12.72804 -12.43535 -12.08950 -11.84162 -11.58932 -11.35039 -11.30567 -11.22924 -11.14383 -10.94967 -10.84089 -10.78827 -10.51950 -10.35022 -10.25858 -9.69179 -9.49492 -9.13703 -9.01345 -8.55379 -8.02608 -7.80577 -6.16453 -4.26041 1.47646 1.95911 2.17821 2.83891 2.86196 3.26243 3.30988 3.33550 3.80149 4.12375 4.19849 4.32283 4.35956 4.53557 4.67943 4.84414 4.95606 5.03396 5.14324 5.15973 5.18410 5.32441 5.41233 5.44430 5.54308 5.62194 5.71980 5.89625 6.06119 6.24969 6.32157 6.37394 6.56208 6.76672 6.82816 6.95935 7.03858 7.16574 7.24527 7.28419 7.49475 7.58700 7.65633 7.79862 8.01273 8.09428 8.47186 8.64013 8.87896 9.40643 10.88862 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030643 B = 0.002225 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.522425 B =12580.902154 C =13080.655478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.537 4.537 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.667 5.667 14 C 0.497 3.503 15 O -0.532 6.532 16 C 0.508 3.492 17 O -0.516 6.516 18 N -0.620 5.620 19 C 0.002 3.998 20 C 0.051 3.949 21 N -0.282 5.282 22 N -0.368 5.368 23 C 0.143 3.857 24 C -0.108 4.108 25 C -0.159 4.159 26 C -0.146 4.146 27 C 0.019 3.981 28 H 0.026 0.974 29 H 0.035 0.965 30 H 0.051 0.949 31 H 0.103 0.897 32 H 0.035 0.965 33 H 0.266 0.734 34 H 0.402 0.598 35 H 0.421 0.579 36 H 0.207 0.793 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.049 0.951 41 H 0.090 0.910 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.316 10.256 15.469 24.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.072 0.928 5 C -0.575 4.575 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.316 5.316 14 C 0.276 3.724 15 O -0.411 6.411 16 C 0.290 3.710 17 O -0.390 6.390 18 N -0.267 5.267 19 C -0.102 4.102 20 C -0.135 4.135 21 N -0.104 5.104 22 N -0.152 5.152 23 C 0.022 3.978 24 C -0.127 4.127 25 C -0.217 4.217 26 C -0.204 4.204 27 C -0.129 4.129 28 H 0.045 0.955 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.121 0.879 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.236 0.764 35 H 0.258 0.742 36 H 0.223 0.777 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.109 0.891 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -16.344 10.637 16.451 25.513 hybrid contribution 0.804 -0.336 -1.043 1.359 sum -15.539 10.302 15.408 24.187 Atomic orbital electron populations 1.21855 0.98322 0.98390 1.01036 1.21965 0.92640 0.99420 1.02767 1.19003 0.94740 0.89383 0.80152 0.92764 1.21176 0.90339 1.39441 1.06555 0.91798 1.24873 0.98811 0.94620 0.95263 1.69873 1.35337 1.37390 1.09333 0.86464 0.84550 0.78407 0.77463 1.20054 1.21132 1.20113 1.46445 1.13389 1.52507 1.19276 1.19552 0.84498 0.81387 0.86997 1.90737 1.51255 1.59556 1.39511 1.20841 0.81410 0.79179 0.89537 1.90604 1.50869 1.57439 1.40102 1.42499 1.16696 1.53674 1.13825 1.17782 0.95544 1.07310 0.89599 1.24616 1.01248 0.98331 0.89336 1.77244 0.91272 1.19827 1.22057 1.48214 1.12646 1.44825 1.09499 1.21833 0.86763 0.95185 0.94061 1.21402 0.96730 1.00226 0.94334 1.22091 0.98816 1.02222 0.98546 1.21798 0.96813 1.00835 1.00906 1.21805 0.99319 1.02640 0.89120 0.95517 0.94580 0.92955 0.87867 0.94649 0.92410 0.76352 0.74173 0.77671 0.89764 0.88711 0.90696 0.93199 0.89141 0.92996 0.92493 0.91943 0.92282 0.80592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.51 37.16 0.32 -2.62 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.55 2.24 -69.08 -0.15 6.39 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.54 -13.93 8.73 -34.44 -0.30 -14.23 16 6 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.02 11.29 55.43 0.63 -23.40 16 9 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.67 -13.93 5.02 -55.41 -0.28 -14.21 16 14 C 0.50 9.61 6.45 -11.64 -0.08 9.54 16 15 O -0.53 -11.09 13.61 5.49 0.07 -11.01 16 16 C 0.51 8.48 7.86 -11.65 -0.09 8.39 16 17 O -0.52 -9.14 13.63 5.45 0.07 -9.07 16 18 N -0.62 -8.47 5.45 -10.48 -0.06 -8.53 16 19 C 0.00 0.03 6.90 -83.96 -0.58 -0.55 16 20 C 0.05 0.72 10.84 -17.19 -0.19 0.54 16 21 N -0.28 -3.64 9.61 30.72 0.30 -3.34 16 22 N -0.37 -3.74 3.69 -61.16 -0.23 -3.97 16 23 C 0.14 0.95 5.96 -4.04 -0.02 0.92 16 24 C -0.11 -0.72 3.12 -90.62 -0.28 -1.01 16 25 C -0.16 -1.32 8.92 37.16 0.33 -0.99 16 26 C -0.15 -0.68 9.19 37.16 0.34 -0.34 16 27 C 0.02 0.19 11.49 -16.91 -0.19 0.00 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.04 0.74 5.65 -51.93 -0.29 0.44 16 30 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 31 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.40 7.89 8.00 -40.82 -0.33 7.56 16 35 H 0.42 4.99 8.29 -40.82 -0.34 4.65 16 36 H 0.21 3.08 5.92 -52.49 -0.31 2.77 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.38 8.07 -51.93 -0.42 -0.03 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.98 5.36 -51.93 -0.28 0.70 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.18 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 374.16 15.07 5.64 5.64 Total: -1.00 -29.76 374.16 -6.86 -36.61 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -6.84 Total: 11.35 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -1.14 Total: 4.54 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.36 Total: -53.44 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: 0.15 Total: -20.08 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.76 -6.86 -36.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128169869.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.574 kcal (2) G-P(sol) polarization free energy of solvation -29.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds