Wall clock time and date at job start Tue Mar 31 2020 12:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46897 * 2 1 4 4 H 1.08997 * 109.46769 * 305.00011 * 3 2 1 5 5 C 1.50700 * 109.46781 * 185.00265 * 3 2 1 6 6 H 1.08006 * 119.99723 * 240.00113 * 5 3 2 7 7 C 1.37878 * 120.00527 * 59.99960 * 5 3 2 8 8 N 1.31515 * 119.99461 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00209 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47170 * 60.00326 * 9 7 5 11 11 H 1.48498 * 109.46932 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47162 * 300.00069 * 9 7 5 13 13 N 1.46494 * 109.47118 * 65.00507 * 3 2 1 14 14 C 1.34784 * 119.99635 * 274.99773 * 13 3 2 15 15 O 1.21359 * 119.99960 * 359.97438 * 14 13 3 16 16 C 1.49323 * 119.99724 * 179.97438 * 14 13 3 17 17 O 1.21404 * 120.00413 * 0.02562 * 16 14 13 18 18 N 1.34774 * 120.00143 * 179.97438 * 16 14 13 19 19 C 1.40481 * 120.00378 * 180.02562 * 18 16 14 20 20 C 1.40335 * 126.11424 * 0.02562 * 19 18 16 21 21 N 1.30824 * 108.20937 * 180.02562 * 20 19 18 22 22 N 1.40055 * 108.36778 * 359.97438 * 21 20 19 23 23 C 1.46504 * 125.99584 * 180.02562 * 22 21 20 24 24 C 1.52990 * 109.47199 * 304.97976 * 23 22 21 25 25 C 1.53003 * 109.47396 * 65.00073 * 24 23 22 26 26 C 1.53000 * 109.47061 * 184.99894 * 24 23 22 27 27 C 1.35230 * 108.00883 * 359.74059 * 22 21 20 28 28 H 1.09002 * 109.46940 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46957 * 299.99648 * 1 2 3 30 30 H 1.08997 * 109.47207 * 59.99863 * 1 2 3 31 31 H 1.09002 * 109.46957 * 240.00352 * 2 1 3 32 32 H 1.08997 * 109.47207 * 120.00137 * 2 1 3 33 33 H 0.96997 * 119.99851 * 179.97438 * 8 7 5 34 34 H 0.96995 * 120.00292 * 95.27206 * 13 3 2 35 35 H 0.97004 * 120.00141 * 359.97438 * 18 16 14 36 36 H 1.08000 * 125.89370 * 0.02562 * 20 19 18 37 37 H 1.08998 * 109.46724 * 64.98071 * 23 22 21 38 38 H 1.08995 * 109.46810 * 184.97881 * 23 22 21 39 39 H 1.09000 * 109.47421 * 304.99838 * 24 23 22 40 40 H 1.08997 * 109.47659 * 179.97438 * 25 24 23 41 41 H 1.09007 * 109.46758 * 299.99791 * 25 24 23 42 42 H 1.09000 * 109.47027 * 59.99524 * 25 24 23 43 43 H 1.08996 * 109.47388 * 60.00262 * 26 24 23 44 44 H 1.09005 * 109.46867 * 179.97438 * 26 24 23 45 45 H 1.09004 * 109.47056 * 299.99753 * 26 24 23 46 46 H 1.08004 * 126.17856 * 180.26212 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8813 -1.3819 10 1 6.5975 0.1473 -0.2350 11 1 6.3977 0.2179 -2.6510 12 1 6.4994 2.2816 -1.3822 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3398 2.6327 0.4335 16 6 0.0399 3.3314 2.6431 17 8 0.8152 3.3636 3.5768 18 7 -1.1772 3.8988 2.7582 19 6 -1.5488 4.5268 3.9586 20 6 -0.7584 4.6386 5.1128 21 7 -1.4460 5.2862 6.0180 22 7 -2.6956 5.6101 5.4749 23 6 -3.7690 6.3370 6.1576 24 6 -4.1092 5.6292 7.4705 25 6 -2.9076 5.7009 8.4149 26 6 -5.3118 6.3145 8.1225 27 6 -2.7353 5.1399 4.2076 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.8292 -0.0611 -2.9498 34 1 2.2734 2.1266 1.9964 35 1 -1.7963 3.8741 2.0119 36 1 0.2444 4.2561 5.2330 37 1 -3.4416 7.3551 6.3678 38 1 -4.6524 6.3637 5.5197 39 1 -4.3510 4.5857 7.2688 40 1 -3.1501 5.1971 9.3506 41 1 -2.0508 5.2126 7.9504 42 1 -2.6658 6.7444 8.6167 43 1 -6.1679 6.2634 7.4499 44 1 -5.5545 5.8099 9.0578 45 1 -5.0700 7.3580 8.3244 46 1 -3.5621 5.2322 3.5189 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128169869.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:07 Heat of formation + Delta-G solvation = -16.812668 kcal Electronic energy + Delta-G solvation = -26873.731150 eV Core-core repulsion = 22992.493166 eV Total energy + Delta-G solvation = -3881.237983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.53454 -41.43516 -39.63433 -37.42520 -37.13294 -35.74567 -34.26753 -32.87065 -32.76365 -30.43364 -29.14681 -27.99139 -27.31803 -25.87488 -24.64743 -22.94868 -22.20994 -21.65419 -21.26243 -20.79858 -19.66877 -18.58733 -18.03060 -17.57212 -17.08765 -16.87011 -16.50366 -16.38577 -15.94831 -15.84997 -15.42756 -15.04120 -14.93299 -14.59090 -14.38382 -13.94522 -13.82517 -13.74060 -13.46964 -13.20100 -13.17197 -12.95800 -12.94064 -12.66660 -12.53280 -12.50610 -12.13144 -12.09004 -12.02545 -11.77338 -11.65796 -11.57497 -11.32110 -11.08969 -10.58373 -10.47881 -10.34979 -9.80012 -8.79248 -8.16741 -6.33392 0.27546 0.91401 1.25338 1.47046 1.47860 1.55646 1.71280 1.74152 2.38146 2.42102 2.89154 3.12993 3.54799 3.60561 3.81741 3.89043 4.06638 4.20241 4.35918 4.49588 4.51212 4.51537 4.57736 4.65969 4.73987 4.76533 4.81857 4.97289 5.03029 5.05168 5.09053 5.24504 5.25092 5.40036 5.40112 5.42869 5.48743 5.58249 5.71043 5.77707 5.82695 6.04469 6.12988 6.14582 6.57101 6.69452 6.72124 6.91650 7.16069 7.38624 8.88118 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030643 B = 0.002225 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.522425 B =12580.902154 C =13080.655478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C 0.277 3.723 4 H 0.016 0.984 5 C -0.554 4.554 6 H 0.067 0.933 7 C 0.021 3.979 8 N -0.909 5.909 9 Si 0.968 3.032 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.672 5.672 14 C 0.499 3.501 15 O -0.547 6.547 16 C 0.511 3.489 17 O -0.531 6.531 18 N -0.599 5.599 19 C -0.034 4.034 20 C 0.030 3.970 21 N -0.299 5.299 22 N -0.359 5.359 23 C 0.132 3.868 24 C -0.104 4.104 25 C -0.160 4.160 26 C -0.140 4.140 27 C 0.051 3.949 28 H 0.048 0.952 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.038 0.962 33 H 0.267 0.733 34 H 0.408 0.592 35 H 0.431 0.569 36 H 0.187 0.813 37 H 0.093 0.907 38 H 0.133 0.867 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.306 11.427 16.353 27.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.163 4.163 3 C 0.174 3.826 4 H 0.033 0.967 5 C -0.592 4.592 6 H 0.085 0.915 7 C -0.180 4.180 8 N -0.547 5.547 9 Si 0.793 3.207 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.322 5.322 14 C 0.279 3.721 15 O -0.427 6.427 16 C 0.293 3.707 17 O -0.407 6.407 18 N -0.246 5.246 19 C -0.138 4.138 20 C -0.156 4.156 21 N -0.123 5.123 22 N -0.143 5.143 23 C 0.013 3.987 24 C -0.123 4.123 25 C -0.218 4.218 26 C -0.198 4.198 27 C -0.098 4.098 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.243 0.757 35 H 0.270 0.730 36 H 0.204 0.796 37 H 0.111 0.889 38 H 0.151 0.849 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -18.377 11.841 17.379 27.928 hybrid contribution 1.264 -0.598 -1.227 1.860 sum -17.113 11.243 16.153 26.080 Atomic orbital electron populations 1.21705 0.96486 0.99650 1.00478 1.21821 0.94234 0.98583 1.01617 1.18620 0.93989 0.89574 0.80397 0.96657 1.21500 0.91328 1.39492 1.06864 0.91458 1.25675 1.03111 0.94236 0.94942 1.70002 1.36999 1.37939 1.09733 0.85461 0.79321 0.78403 0.77544 1.19291 1.20862 1.19822 1.46221 1.14404 1.53159 1.18372 1.19960 0.83618 0.80644 0.87876 1.90719 1.51539 1.59919 1.40498 1.20155 0.82537 0.79924 0.88102 1.90620 1.51629 1.58446 1.40044 1.42238 1.15477 1.52363 1.14530 1.17944 0.97015 1.09846 0.89035 1.24437 1.01176 0.99444 0.90493 1.77267 0.92622 1.20246 1.22123 1.48657 1.12282 1.43630 1.09694 1.22275 0.86903 0.94994 0.94523 1.21358 0.96738 0.99990 0.94196 1.22070 0.98745 1.02003 0.98950 1.21754 0.96208 1.00835 1.00980 1.22468 0.98950 0.99286 0.89104 0.93305 0.94053 0.94453 0.90320 0.94295 0.92395 0.75679 0.73050 0.79593 0.88891 0.84921 0.91758 0.93061 0.91761 0.92749 0.90861 0.92159 0.91624 0.76045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.33 8.51 71.98 0.61 -4.72 16 2 C -0.12 -5.92 5.45 30.60 0.17 -5.76 16 3 C 0.28 13.88 2.24 44.25 0.10 13.98 16 4 H 0.02 0.89 7.58 -2.39 -0.02 0.88 16 5 C -0.55 -29.25 8.73 25.60 0.22 -29.03 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.02 1.13 5.29 84.65 0.45 1.58 16 8 N -0.91 -50.50 11.29 21.45 0.24 -50.26 16 9 Si 0.97 42.02 29.54 68.60 2.03 44.05 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 13 N -0.67 -28.65 5.02 -447.56 -2.25 -30.90 16 14 C 0.50 19.50 6.45 87.23 0.56 20.06 16 15 O -0.55 -22.99 13.61 -3.28 -0.04 -23.03 16 16 C 0.51 17.10 7.86 87.23 0.69 17.78 16 17 O -0.53 -19.21 13.63 -3.41 -0.05 -19.26 16 18 N -0.60 -15.73 5.45 -305.42 -1.67 -17.39 16 19 C -0.03 -0.84 6.90 37.71 0.26 -0.58 16 20 C 0.03 0.85 10.84 85.35 0.93 1.78 16 21 N -0.30 -7.58 9.61 -56.72 -0.54 -8.13 16 22 N -0.36 -6.38 3.69 -347.40 -1.28 -7.66 16 23 C 0.13 1.28 5.96 86.38 0.51 1.79 16 24 C -0.10 -1.14 3.12 -10.80 -0.03 -1.17 16 25 C -0.16 -2.52 8.92 71.98 0.64 -1.87 16 26 C -0.14 -0.87 9.19 71.98 0.66 -0.21 16 27 C 0.05 0.85 11.49 83.62 0.96 1.81 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.04 1.68 5.65 -2.39 -0.01 1.66 16 30 H 0.04 1.66 7.85 -2.39 -0.02 1.64 16 31 H 0.08 4.19 5.95 -2.39 -0.01 4.17 16 32 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 34 H 0.41 16.36 8.00 -92.71 -0.74 15.62 16 35 H 0.43 9.46 8.29 -92.71 -0.77 8.69 16 36 H 0.19 5.91 5.92 -2.91 -0.02 5.89 16 37 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.13 0.35 8.07 -2.39 -0.02 0.33 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.06 1.39 5.36 -2.38 -0.01 1.37 16 42 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 44 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 45 H 0.06 0.34 8.14 -2.38 -0.02 0.33 16 46 H 0.22 1.50 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -66.58 374.16 2.67 -63.90 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: -0.50 Total: 33.24 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 6.73 Total: 15.44 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -5.49 Total: -114.34 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -0.09 Total: -42.29 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -66.58 2.67 -63.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128169869.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.088 kcal (2) G-P(sol) polarization free energy of solvation -66.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds