Wall clock time and date at job start Tue Mar 31 2020 12:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47147 * 90.00197 * 9 7 5 11 11 H 1.48499 * 109.46797 * 209.99607 * 9 7 5 12 12 H 1.48500 * 109.47032 * 329.99738 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21364 * 120.00115 * 359.97438 * 14 13 3 16 16 C 1.49307 * 120.00180 * 180.02562 * 14 13 3 17 17 O 1.21397 * 119.99534 * 359.97438 * 16 14 13 18 18 N 1.34776 * 120.00465 * 179.97438 * 16 14 13 19 19 C 1.39192 * 120.00263 * 179.97438 * 18 16 14 20 20 C 1.36213 * 126.27128 * 359.69015 * 19 18 16 21 21 C 1.39696 * 107.85878 * 179.90652 * 20 19 18 22 22 N 1.30857 * 108.45688 * 0.36019 * 21 20 19 23 23 N 1.35853 * 126.27012 * 180.02562 * 19 18 16 24 24 C 1.46498 * 126.09902 * 359.93194 * 23 19 18 25 25 C 1.53008 * 109.46709 * 60.01149 * 24 23 19 26 26 C 1.53004 * 109.47140 * 180.02562 * 24 23 19 27 27 C 1.52999 * 109.47878 * 300.00855 * 24 23 19 28 28 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 30 30 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 31 31 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 32 32 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 33 33 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 34 34 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 35 35 H 0.97007 * 119.99073 * 0.02562 * 18 16 14 36 36 H 1.07995 * 126.07459 * 0.03018 * 20 19 18 37 37 H 1.08000 * 125.76996 * 180.14305 * 21 20 19 38 38 H 1.08997 * 109.47562 * 59.99566 * 25 24 23 39 39 H 1.08997 * 109.46915 * 179.97438 * 25 24 23 40 40 H 1.09004 * 109.46693 * 299.99809 * 25 24 23 41 41 H 1.09003 * 109.46681 * 60.00929 * 26 24 23 42 42 H 1.08997 * 109.47048 * 180.02562 * 26 24 23 43 43 H 1.08996 * 109.47318 * 300.01151 * 26 24 23 44 44 H 1.09004 * 109.46875 * 59.99363 * 27 24 23 45 45 H 1.08994 * 109.47303 * 180.02562 * 27 24 23 46 46 H 1.08997 * 109.46493 * 300.00069 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.4427 2.1131 2.0837 11 1 6.4390 -0.3107 2.1547 12 1 6.6131 0.8396 0.0270 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3402 2.6319 -0.4339 16 6 0.0399 3.3312 -2.6431 17 8 0.8152 3.3633 -3.5767 18 7 -1.1776 3.8977 -2.7585 19 6 -1.5458 4.5199 -3.9480 20 6 -0.7790 4.6358 -5.0678 21 6 -1.5242 5.3246 -6.0279 22 7 -2.6898 5.6219 -5.5127 23 7 -2.7335 5.1285 -4.2025 24 6 -3.8594 5.2467 -3.2728 25 6 -3.4124 6.0111 -2.0250 26 6 -5.0039 6.0022 -3.9513 27 6 -4.3382 3.8502 -2.8711 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0608 2.9500 34 1 2.2720 2.1231 -1.9978 35 1 -1.7969 3.8724 -2.0123 36 1 0.2257 4.2599 -5.1922 37 1 -1.1929 5.5730 -7.0253 38 1 -3.0713 7.0061 -2.3111 39 1 -4.2502 6.0995 -1.3334 40 1 -2.5971 5.4726 -1.5417 41 1 -5.3223 5.4573 -4.8401 42 1 -5.8415 6.0905 -3.2594 43 1 -4.6631 6.9971 -4.2378 44 1 -3.5230 3.3117 -2.3878 45 1 -5.1762 3.9383 -2.1798 46 1 -4.6567 3.3058 -3.7600 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128239665.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:54 Heat of formation + Delta-G solvation = 11.140425 kcal Electronic energy + Delta-G solvation = -28088.809932 eV Core-core repulsion = 24208.784085 eV Total energy + Delta-G solvation = -3880.025846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.77481 -40.17423 -38.32030 -37.06063 -35.62444 -34.78784 -32.48981 -31.07641 -30.36597 -29.26158 -27.82351 -27.71012 -27.32837 -24.93743 -23.10377 -22.49858 -21.57570 -20.18357 -19.90346 -19.52590 -18.13971 -17.26965 -16.52128 -16.09298 -15.96370 -15.48052 -15.34090 -15.21053 -14.54555 -14.41719 -14.29500 -13.78751 -13.65154 -13.43254 -13.21173 -12.80310 -12.70339 -12.58755 -12.38050 -12.21108 -12.15561 -11.69291 -11.62393 -11.57112 -11.37281 -11.19748 -11.10380 -11.00829 -10.92329 -10.55934 -10.41676 -10.31108 -9.76032 -9.21623 -9.18567 -9.05040 -8.61927 -8.18689 -8.11063 -6.22421 -4.32310 1.31286 1.89847 2.12036 2.70978 2.90319 3.21053 3.28182 3.30873 3.59097 3.86723 4.10547 4.28126 4.37437 4.48728 4.82079 4.94018 5.07922 5.08654 5.10099 5.27131 5.27516 5.32181 5.40324 5.43998 5.51812 5.66185 5.78981 5.82524 5.95818 6.08236 6.24926 6.29405 6.48120 6.71045 6.83339 6.87706 6.93706 7.03973 7.08670 7.19875 7.40157 7.57078 7.68541 7.72414 7.78119 8.01764 8.33333 8.52533 8.78080 9.34770 10.82961 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022236 B = 0.002967 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.913966 B = 9436.278113 C =10081.247124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 C 0.268 3.732 4 H 0.056 0.944 5 C -0.538 4.538 6 H 0.065 0.935 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.663 5.663 14 C 0.499 3.501 15 O -0.529 6.529 16 C 0.511 3.489 17 O -0.488 6.488 18 N -0.630 5.630 19 C 0.310 3.690 20 C -0.281 4.281 21 C 0.056 3.944 22 N -0.290 5.290 23 N -0.378 5.378 24 C 0.176 3.824 25 C -0.166 4.166 26 C -0.137 4.137 27 C -0.166 4.166 28 H 0.027 0.973 29 H 0.052 0.948 30 H 0.034 0.966 31 H 0.036 0.964 32 H 0.104 0.896 33 H 0.266 0.734 34 H 0.403 0.597 35 H 0.420 0.580 36 H 0.173 0.827 37 H 0.185 0.815 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.084 0.916 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.145 8.181 -10.113 19.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.074 0.926 5 C -0.576 4.576 6 H 0.083 0.917 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.312 5.312 14 C 0.277 3.723 15 O -0.408 6.408 16 C 0.293 3.707 17 O -0.359 6.359 18 N -0.281 5.281 19 C 0.090 3.910 20 C -0.312 4.312 21 C -0.130 4.130 22 N -0.111 5.111 23 N -0.168 5.168 24 C 0.093 3.907 25 C -0.225 4.225 26 C -0.194 4.194 27 C -0.225 4.225 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.238 0.762 35 H 0.260 0.740 36 H 0.190 0.810 37 H 0.202 0.798 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.103 0.897 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.264 8.578 -9.955 20.141 hybrid contribution 1.729 -0.450 0.305 1.813 sum -13.534 8.128 -9.650 18.503 Atomic orbital electron populations 1.21862 0.98336 0.98500 1.00961 1.21972 0.92620 0.99335 1.02902 1.19056 0.94896 0.89409 0.79900 0.92646 1.21198 0.90216 1.39569 1.06651 0.91684 1.24871 0.98892 0.94524 0.95216 1.69883 1.35322 1.37354 1.09319 0.86398 0.84417 0.77701 0.78357 1.20482 1.21004 1.19677 1.46478 1.13152 1.52155 1.19372 1.19380 0.84722 0.81593 0.86586 1.90751 1.51167 1.59574 1.39276 1.21017 0.80822 0.78883 0.89976 1.90682 1.50163 1.55396 1.39628 1.42867 1.17619 1.54002 1.13632 1.18123 0.88178 0.96209 0.88475 1.21701 1.03966 1.13420 0.92143 1.23736 0.91383 0.97733 1.00187 1.77363 1.21309 1.22600 0.89826 1.49105 1.10696 1.45497 1.11504 1.20778 0.85022 0.97005 0.87864 1.22359 1.02769 1.01119 0.96218 1.21832 0.95730 1.00929 1.00923 1.22356 1.02468 0.94786 1.02842 0.95395 0.92918 0.94699 0.94548 0.87753 0.92399 0.76226 0.73964 0.81004 0.79842 0.91191 0.89670 0.91953 0.91239 0.90943 0.91239 0.91962 0.89671 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.51 37.16 0.32 -2.55 16 2 C -0.13 -2.97 5.45 -26.73 -0.15 -3.11 16 3 C 0.27 6.37 2.24 -69.08 -0.15 6.21 16 4 H 0.06 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.54 -13.66 8.73 -34.44 -0.30 -13.96 16 6 H 0.07 1.60 7.74 -52.49 -0.41 1.20 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.59 11.30 55.43 0.63 -22.96 16 9 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 12 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 13 N -0.66 -13.39 5.01 -55.41 -0.28 -13.67 16 14 C 0.50 9.37 6.45 -11.65 -0.08 9.30 16 15 O -0.53 -10.66 13.61 5.48 0.07 -10.59 16 16 C 0.51 8.43 7.85 -11.65 -0.09 8.34 16 17 O -0.49 -8.52 13.60 5.46 0.07 -8.44 16 18 N -0.63 -8.91 4.72 -11.80 -0.06 -8.97 16 19 C 0.31 4.37 7.02 -152.86 -1.07 3.30 16 20 C -0.28 -4.01 9.65 -39.77 -0.38 -4.40 16 21 C 0.06 0.68 12.00 -17.42 -0.21 0.47 16 22 N -0.29 -3.78 11.64 30.59 0.36 -3.43 16 23 N -0.38 -4.73 3.48 -47.60 -0.17 -4.89 16 24 C 0.18 1.68 1.06 -131.81 -0.14 1.54 16 25 C -0.17 -1.44 8.48 37.16 0.32 -1.13 16 26 C -0.14 -1.09 7.99 37.16 0.30 -0.80 16 27 C -0.17 -1.43 8.47 37.16 0.31 -1.12 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 1.13 7.85 -51.93 -0.41 0.73 16 30 H 0.03 0.69 5.64 -51.93 -0.29 0.40 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 33 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 34 H 0.40 7.63 8.01 -40.82 -0.33 7.30 16 35 H 0.42 5.39 4.43 -40.82 -0.18 5.21 16 36 H 0.17 2.61 5.83 -52.49 -0.31 2.31 16 37 H 0.18 1.60 8.06 -52.49 -0.42 1.17 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.61 5.90 -51.93 -0.31 0.30 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.60 5.91 -51.93 -0.31 0.30 16 45 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 367.89 15.07 5.54 5.54 Total: -1.00 -28.70 367.89 -6.87 -35.56 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -6.60 Total: 13.03 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -1.42 Total: 3.78 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.48 Total: -53.92 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.15 Total: -19.03 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.70 -6.87 -35.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128239665.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.705 kcal (2) G-P(sol) polarization free energy of solvation -28.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds