Wall clock time and date at job start Tue Mar 31 2020 12:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47147 * 90.00197 * 9 7 5 11 11 H 1.48499 * 109.46797 * 209.99607 * 9 7 5 12 12 H 1.48500 * 109.47032 * 329.99738 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21364 * 120.00115 * 359.97438 * 14 13 3 16 16 C 1.49307 * 120.00180 * 180.02562 * 14 13 3 17 17 O 1.21397 * 119.99534 * 359.97438 * 16 14 13 18 18 N 1.34776 * 120.00465 * 179.97438 * 16 14 13 19 19 C 1.39192 * 120.00263 * 179.97438 * 18 16 14 20 20 C 1.36213 * 126.27128 * 359.69015 * 19 18 16 21 21 C 1.39696 * 107.85878 * 179.90652 * 20 19 18 22 22 N 1.30857 * 108.45688 * 0.36019 * 21 20 19 23 23 N 1.35853 * 126.27012 * 180.02562 * 19 18 16 24 24 C 1.46498 * 126.09902 * 359.93194 * 23 19 18 25 25 C 1.53008 * 109.46709 * 60.01149 * 24 23 19 26 26 C 1.53004 * 109.47140 * 180.02562 * 24 23 19 27 27 C 1.52999 * 109.47878 * 300.00855 * 24 23 19 28 28 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 30 30 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 31 31 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 32 32 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 33 33 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 34 34 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 35 35 H 0.97007 * 119.99073 * 0.02562 * 18 16 14 36 36 H 1.07995 * 126.07459 * 0.03018 * 20 19 18 37 37 H 1.08000 * 125.76996 * 180.14305 * 21 20 19 38 38 H 1.08997 * 109.47562 * 59.99566 * 25 24 23 39 39 H 1.08997 * 109.46915 * 179.97438 * 25 24 23 40 40 H 1.09004 * 109.46693 * 299.99809 * 25 24 23 41 41 H 1.09003 * 109.46681 * 60.00929 * 26 24 23 42 42 H 1.08997 * 109.47048 * 180.02562 * 26 24 23 43 43 H 1.08996 * 109.47318 * 300.01151 * 26 24 23 44 44 H 1.09004 * 109.46875 * 59.99363 * 27 24 23 45 45 H 1.08994 * 109.47303 * 180.02562 * 27 24 23 46 46 H 1.08997 * 109.46493 * 300.00069 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.4427 2.1131 2.0837 11 1 6.4390 -0.3107 2.1547 12 1 6.6131 0.8396 0.0270 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3402 2.6319 -0.4339 16 6 0.0399 3.3312 -2.6431 17 8 0.8152 3.3633 -3.5767 18 7 -1.1776 3.8977 -2.7585 19 6 -1.5458 4.5199 -3.9480 20 6 -0.7790 4.6358 -5.0678 21 6 -1.5242 5.3246 -6.0279 22 7 -2.6898 5.6219 -5.5127 23 7 -2.7335 5.1285 -4.2025 24 6 -3.8594 5.2467 -3.2728 25 6 -3.4124 6.0111 -2.0250 26 6 -5.0039 6.0022 -3.9513 27 6 -4.3382 3.8502 -2.8711 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0608 2.9500 34 1 2.2720 2.1231 -1.9978 35 1 -1.7969 3.8724 -2.0123 36 1 0.2257 4.2599 -5.1922 37 1 -1.1929 5.5730 -7.0253 38 1 -3.0713 7.0061 -2.3111 39 1 -4.2502 6.0995 -1.3334 40 1 -2.5971 5.4726 -1.5417 41 1 -5.3223 5.4573 -4.8401 42 1 -5.8415 6.0905 -3.2594 43 1 -4.6631 6.9971 -4.2378 44 1 -3.5230 3.3117 -2.3878 45 1 -5.1762 3.9383 -2.1798 46 1 -4.6567 3.3058 -3.7600 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128239665.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:53 Heat of formation + Delta-G solvation = -6.439650 kcal Electronic energy + Delta-G solvation = -28089.572261 eV Core-core repulsion = 24208.784085 eV Total energy + Delta-G solvation = -3880.788176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.85836 -41.54384 -39.79821 -37.86312 -37.25630 -36.14155 -34.33175 -32.84347 -31.31625 -30.36098 -29.15947 -28.50050 -28.37671 -26.44024 -24.84605 -23.44954 -22.85820 -21.61737 -21.16522 -21.04374 -19.52717 -18.32299 -18.09924 -17.59626 -17.32899 -16.98625 -16.46389 -16.40263 -16.08065 -15.59387 -15.37088 -15.13912 -14.66951 -14.63604 -14.61958 -14.16399 -13.89595 -13.51335 -13.35211 -13.27011 -13.20405 -13.08915 -12.97748 -12.85416 -12.76384 -12.69335 -12.33055 -12.22731 -12.20712 -12.11785 -12.06293 -11.60879 -11.55504 -11.11355 -10.71131 -10.54909 -10.01080 -9.88009 -9.27145 -8.18727 -6.35338 -0.00742 0.75349 0.97043 1.45721 1.47109 1.56654 1.63412 1.83318 2.15951 2.37947 2.56986 3.11585 3.34010 3.39515 3.66660 3.79733 3.97635 4.18769 4.33128 4.41495 4.49017 4.54841 4.56923 4.62188 4.64274 4.70670 4.72945 4.80254 4.80323 4.99527 5.02045 5.05066 5.11390 5.22243 5.27054 5.32287 5.38108 5.56216 5.63525 5.71935 5.78269 5.81077 5.96285 6.11171 6.41653 6.65052 6.70244 6.71553 7.04902 7.36240 8.86370 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022236 B = 0.002967 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.913966 B = 9436.278113 C =10081.247124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.124 4.124 3 C 0.277 3.723 4 H 0.018 0.982 5 C -0.554 4.554 6 H 0.069 0.931 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.967 3.033 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.265 1.265 13 N -0.666 5.666 14 C 0.502 3.498 15 O -0.542 6.542 16 C 0.520 3.480 17 O -0.498 6.498 18 N -0.615 5.615 19 C 0.293 3.707 20 C -0.297 4.297 21 C 0.059 3.941 22 N -0.298 5.298 23 N -0.374 5.374 24 C 0.165 3.835 25 C -0.164 4.164 26 C -0.130 4.130 27 C -0.164 4.164 28 H 0.049 0.951 29 H 0.037 0.963 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.267 0.733 34 H 0.410 0.590 35 H 0.426 0.574 36 H 0.161 0.839 37 H 0.217 0.783 38 H 0.062 0.938 39 H 0.113 0.887 40 H 0.047 0.953 41 H 0.061 0.939 42 H 0.101 0.899 43 H 0.060 0.940 44 H 0.048 0.952 45 H 0.113 0.887 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.070 8.777 -11.020 20.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.175 3.825 4 H 0.036 0.964 5 C -0.592 4.592 6 H 0.087 0.913 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.792 3.208 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.189 1.189 13 N -0.315 5.315 14 C 0.282 3.718 15 O -0.421 6.421 16 C 0.301 3.699 17 O -0.370 6.370 18 N -0.266 5.266 19 C 0.073 3.927 20 C -0.328 4.328 21 C -0.127 4.127 22 N -0.119 5.119 23 N -0.164 5.164 24 C 0.083 3.917 25 C -0.222 4.222 26 C -0.188 4.188 27 C -0.222 4.222 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.246 0.754 35 H 0.268 0.732 36 H 0.179 0.821 37 H 0.233 0.767 38 H 0.081 0.919 39 H 0.131 0.869 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.119 0.881 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.131 0.869 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.232 9.197 -10.881 21.598 hybrid contribution 1.920 -0.577 0.570 2.085 sum -14.312 8.620 -10.310 19.633 Atomic orbital electron populations 1.21719 0.96540 0.99742 1.00442 1.21829 0.94174 0.98505 1.01797 1.18673 0.94108 0.89601 0.80134 0.96411 1.21520 0.91216 1.39524 1.06914 0.91291 1.25652 1.03036 0.94183 0.94930 1.70007 1.36954 1.37961 1.09748 0.85420 0.79385 0.77533 0.78484 1.20371 1.20771 1.18892 1.46230 1.14049 1.52703 1.18539 1.19660 0.83956 0.80945 0.87281 1.90741 1.51443 1.59826 1.40139 1.20350 0.81577 0.79221 0.88743 1.90693 1.50715 1.56060 1.39521 1.42623 1.16757 1.53150 1.14095 1.18184 0.89230 0.97019 0.88240 1.21777 1.03901 1.14112 0.93011 1.24216 0.90611 0.96716 1.01158 1.77341 1.21696 1.22710 0.90169 1.49424 1.10728 1.44563 1.11648 1.21170 0.84693 0.97985 0.87838 1.22375 1.03389 1.00243 0.96215 1.21817 0.95883 0.99878 1.01195 1.22371 1.02899 0.93840 1.03073 0.93245 0.94383 0.94137 0.94094 0.90236 0.92375 0.75434 0.73193 0.82128 0.76671 0.91865 0.86856 0.93379 0.92039 0.88064 0.92096 0.93333 0.86867 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.20 8.51 71.98 0.61 -4.59 16 2 C -0.12 -5.75 5.45 30.60 0.17 -5.59 16 3 C 0.28 13.42 2.24 44.25 0.10 13.52 16 4 H 0.02 1.00 7.58 -2.39 -0.02 0.98 16 5 C -0.55 -28.38 8.73 25.60 0.22 -28.16 16 6 H 0.07 3.40 7.74 -2.91 -0.02 3.37 16 7 C 0.02 1.19 5.29 84.65 0.45 1.64 16 8 N -0.91 -49.44 11.30 21.45 0.24 -49.20 16 9 Si 0.97 41.07 29.54 68.60 2.03 43.09 16 10 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 13 N -0.67 -27.15 5.01 -447.57 -2.24 -29.39 16 14 C 0.50 18.94 6.45 87.22 0.56 19.50 16 15 O -0.54 -22.01 13.61 -3.29 -0.04 -22.05 16 16 C 0.52 17.05 7.85 87.23 0.68 17.74 16 17 O -0.50 -17.29 13.60 -3.39 -0.05 -17.34 16 18 N -0.61 -17.14 4.72 -309.58 -1.46 -18.60 16 19 C 0.29 8.08 7.02 131.25 0.92 9.00 16 20 C -0.30 -8.27 9.65 22.15 0.21 -8.06 16 21 C 0.06 1.35 12.00 85.19 1.02 2.37 16 22 N -0.30 -7.35 11.64 -57.13 -0.66 -8.01 16 23 N -0.37 -8.91 3.48 -304.52 -1.06 -9.97 16 24 C 0.16 2.84 1.06 3.61 0.00 2.84 16 25 C -0.16 -2.55 8.48 71.98 0.61 -1.94 16 26 C -0.13 -1.79 7.99 71.98 0.57 -1.22 16 27 C -0.16 -2.50 8.47 71.98 0.61 -1.89 16 28 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.04 1.64 7.85 -2.39 -0.02 1.62 16 30 H 0.04 1.58 5.64 -2.39 -0.01 1.57 16 31 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.08 4.12 5.95 -2.39 -0.01 4.10 16 33 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 34 H 0.41 15.56 8.01 -92.71 -0.74 14.82 16 35 H 0.43 10.72 4.43 -92.70 -0.41 10.31 16 36 H 0.16 4.85 5.83 -2.91 -0.02 4.84 16 37 H 0.22 3.25 8.06 -2.91 -0.02 3.23 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.05 0.89 5.90 -2.39 -0.01 0.87 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.05 0.88 5.91 -2.39 -0.01 0.86 16 45 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -61.85 367.89 3.37 -58.48 By element: Atomic # 1 Polarization: 37.94 SS G_CDS: -0.13 Total: 37.81 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 6.75 Total: 15.17 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -5.19 Total: -115.17 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -0.09 Total: -39.39 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Total: -61.85 3.37 -58.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128239665.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.044 kcal (2) G-P(sol) polarization free energy of solvation -61.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds