Wall clock time and date at job start Tue Mar 31 2020 12:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46914 * 2 1 4 4 H 1.08993 * 109.47295 * 305.55300 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55318 * 3 2 1 6 6 H 1.07996 * 120.00449 * 245.60469 * 5 3 2 7 7 C 1.37879 * 120.00154 * 65.60852 * 5 3 2 8 8 N 1.31514 * 120.00263 * 196.28627 * 7 5 3 9 9 Si 1.86803 * 120.00061 * 16.28010 * 7 5 3 10 10 H 1.48499 * 109.47518 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.47391 * 300.00728 * 9 7 5 12 12 H 1.48507 * 109.46974 * 60.00396 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55540 * 3 2 1 14 14 C 1.34771 * 119.99789 * 274.99899 * 13 3 2 15 15 O 1.21360 * 120.00402 * 0.02562 * 14 13 3 16 16 C 1.49307 * 119.99962 * 179.97438 * 14 13 3 17 17 O 1.21397 * 119.99881 * 0.02562 * 16 14 13 18 18 N 1.34774 * 120.00374 * 179.97438 * 16 14 13 19 19 C 1.39201 * 120.00124 * 180.02562 * 18 16 14 20 20 C 1.36204 * 126.27600 * 0.02685 * 19 18 16 21 21 C 1.39689 * 107.86104 * 179.97438 * 20 19 18 22 22 N 1.30841 * 108.46295 * 359.97438 * 21 20 19 23 23 N 1.35858 * 126.26744 * 179.71084 * 19 18 16 24 24 C 1.46503 * 126.10165 * 0.04227 * 23 19 18 25 25 C 1.52997 * 109.47162 * 59.99215 * 24 23 19 26 26 C 1.52999 * 109.47036 * 179.97438 * 24 23 19 27 27 C 1.53001 * 109.46548 * 299.99580 * 24 23 19 28 28 H 1.09005 * 109.47083 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47210 * 299.99485 * 1 2 3 30 30 H 1.08998 * 109.47621 * 60.00436 * 1 2 3 31 31 H 1.09008 * 109.47032 * 240.00580 * 2 1 3 32 32 H 1.09000 * 109.47548 * 120.00343 * 2 1 3 33 33 H 0.96993 * 119.99752 * 354.83016 * 8 7 5 34 34 H 0.97002 * 119.99591 * 94.99593 * 13 3 2 35 35 H 0.97010 * 119.99795 * 0.02562 * 18 16 14 36 36 H 1.08000 * 126.06792 * 359.97438 * 20 19 18 37 37 H 1.08010 * 125.76950 * 180.02562 * 21 20 19 38 38 H 1.08996 * 109.47028 * 60.00596 * 25 24 23 39 39 H 1.09003 * 109.46933 * 179.97438 * 25 24 23 40 40 H 1.09002 * 109.47566 * 300.00254 * 25 24 23 41 41 H 1.09001 * 109.47548 * 59.99483 * 26 24 23 42 42 H 1.09001 * 109.46590 * 179.97438 * 26 24 23 43 43 H 1.09004 * 109.46804 * 299.99195 * 26 24 23 44 44 H 1.09000 * 109.47766 * 60.00136 * 27 24 23 45 45 H 1.09006 * 109.46900 * 180.02562 * 27 24 23 46 46 H 1.09001 * 109.47095 * 299.99941 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4448 -0.1375 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2987 8 7 5.4072 0.6862 -1.3142 9 14 3.1039 0.7978 -2.8499 10 1 3.9632 0.2936 -3.9511 11 1 2.0023 -0.1664 -2.6011 12 1 2.5326 2.1146 -3.2306 13 7 1.6638 2.0934 1.2574 14 6 0.4476 2.6599 1.3854 15 8 -0.3362 2.6304 0.4593 16 6 0.0640 3.3228 2.6671 17 8 0.8478 3.3519 3.5937 18 7 -1.1520 3.8897 2.7951 19 6 -1.5093 4.5082 3.9898 20 6 -0.7348 4.6150 5.1051 21 6 -1.4692 5.3054 6.0722 22 7 -2.6386 5.6060 5.5681 23 7 -2.6924 5.1212 4.2550 24 6 -3.8239 5.2494 3.3332 25 6 -4.3118 3.8571 2.9279 26 6 -4.9603 6.0068 4.0229 27 6 -3.3812 6.0177 2.0864 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 5.9548 0.8552 -0.5317 34 1 2.2901 2.1166 1.9978 35 1 -1.7782 3.8668 2.0545 36 1 0.2689 4.2337 5.2211 37 1 -1.1290 5.5504 7.0676 38 1 -4.6271 3.3098 3.8161 39 1 -5.1539 3.9525 2.2424 40 1 -3.5023 3.3171 2.4367 41 1 -4.6129 6.9987 4.3121 42 1 -5.8019 6.1026 3.3369 43 1 -5.2755 5.4590 4.9110 44 1 -2.5717 5.4777 1.5951 45 1 -4.2231 6.1135 1.4007 46 1 -3.0335 7.0096 2.3751 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128239855.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:57 Heat of formation + Delta-G solvation = 12.108067 kcal Electronic energy + Delta-G solvation = -28181.562556 eV Core-core repulsion = 24301.578670 eV Total energy + Delta-G solvation = -3879.983886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.84465 -40.30848 -38.49146 -37.11749 -35.80789 -34.90963 -32.55103 -31.58999 -30.42368 -29.33560 -27.88036 -27.76883 -27.56572 -24.99692 -22.66447 -22.44121 -21.74516 -20.32660 -20.00634 -19.74011 -18.36867 -17.47371 -17.06849 -16.43042 -16.15181 -15.58950 -15.49848 -15.25539 -14.59914 -14.51129 -14.12405 -13.80171 -13.66263 -13.47190 -13.28300 -12.80863 -12.76037 -12.64065 -12.60146 -12.43394 -12.42634 -12.21106 -11.89620 -11.71143 -11.62512 -11.26051 -11.18197 -11.04595 -10.83689 -10.61158 -10.55222 -10.01136 -9.70570 -9.36809 -9.17566 -9.10646 -8.45964 -8.40682 -8.22258 -6.67664 -4.32597 1.21184 1.81823 2.03326 2.61840 2.84260 3.29816 3.36549 3.44467 3.51056 3.74684 4.05110 4.32042 4.33035 4.43340 4.75145 4.77769 5.01654 5.02633 5.06802 5.21762 5.22179 5.25896 5.34535 5.39209 5.45542 5.60510 5.73592 5.77049 5.89567 5.91161 5.94681 6.02490 6.09330 6.48293 6.61682 6.66340 6.70333 6.76581 6.83100 6.91655 7.09120 7.20282 7.41392 7.61069 7.67207 8.08473 8.18473 8.37338 8.69759 9.37184 10.73772 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021769 B = 0.003154 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.942960 B = 8876.318534 C = 9533.722643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.142 4.142 3 C 0.246 3.754 4 H 0.047 0.953 5 C -0.622 4.622 6 H 0.065 0.935 7 C 0.041 3.959 8 N -0.893 5.893 9 Si 1.039 2.961 10 H -0.282 1.282 11 H -0.268 1.268 12 H -0.279 1.279 13 N -0.656 5.656 14 C 0.500 3.500 15 O -0.531 6.531 16 C 0.512 3.488 17 O -0.485 6.485 18 N -0.629 5.629 19 C 0.308 3.692 20 C -0.280 4.280 21 C 0.056 3.944 22 N -0.288 5.288 23 N -0.378 5.378 24 C 0.176 3.824 25 C -0.166 4.166 26 C -0.137 4.137 27 C -0.166 4.166 28 H 0.035 0.965 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.271 0.729 34 H 0.408 0.592 35 H 0.420 0.580 36 H 0.173 0.827 37 H 0.185 0.815 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.085 0.915 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.164 7.900 9.026 22.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C 0.143 3.857 4 H 0.065 0.935 5 C -0.659 4.659 6 H 0.083 0.917 7 C -0.166 4.166 8 N -0.526 5.526 9 Si 0.867 3.133 10 H -0.207 1.207 11 H -0.194 1.194 12 H -0.205 1.205 13 N -0.305 5.305 14 C 0.278 3.722 15 O -0.410 6.410 16 C 0.293 3.707 17 O -0.356 6.356 18 N -0.280 5.280 19 C 0.089 3.911 20 C -0.311 4.311 21 C -0.130 4.130 22 N -0.110 5.110 23 N -0.168 5.168 24 C 0.093 3.907 25 C -0.224 4.224 26 C -0.194 4.194 27 C -0.225 4.225 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.243 0.757 35 H 0.260 0.740 36 H 0.190 0.810 37 H 0.202 0.798 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.103 0.897 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.201 7.878 7.501 22.944 hybrid contribution 0.797 0.163 1.507 1.713 sum -19.404 8.042 9.008 22.854 Atomic orbital electron populations 1.21905 0.97378 0.99329 1.01679 1.22400 0.93802 0.99332 1.02498 1.19305 0.96473 0.88790 0.81118 0.93486 1.22071 0.89196 1.50134 1.04528 0.91660 1.25692 0.97565 0.92260 1.01110 1.70863 1.07011 1.40293 1.34415 0.84129 0.75556 0.77715 0.75922 1.20741 1.19429 1.20526 1.46213 1.13156 1.52203 1.18917 1.19448 0.84570 0.81427 0.86731 1.90740 1.50641 1.59583 1.39992 1.20864 0.80962 0.79025 0.89808 1.90699 1.49537 1.55210 1.40151 1.42833 1.17475 1.54095 1.13643 1.18103 0.88395 0.96318 0.88299 1.21703 1.03978 1.13286 0.92143 1.23741 0.91364 0.97655 1.00231 1.77368 1.21099 1.22715 0.89783 1.49115 1.10787 1.45515 1.11355 1.20781 0.84884 0.96976 0.88038 1.22358 1.02393 0.94852 1.02838 1.21834 0.95802 1.00931 1.00868 1.22358 1.02768 1.01119 0.96216 0.94623 0.93713 0.92786 0.90703 0.92612 0.91877 0.75712 0.73960 0.81007 0.79784 0.91180 0.89657 0.92032 0.91210 0.90922 0.91212 0.92005 0.89651 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 8.53 37.15 0.32 -2.37 16 2 C -0.14 -2.97 5.28 -26.73 -0.14 -3.11 16 3 C 0.25 5.53 1.82 -69.08 -0.13 5.41 16 4 H 0.05 1.12 6.26 -51.93 -0.32 0.80 16 5 C -0.62 -16.19 9.01 -34.44 -0.31 -16.50 16 6 H 0.07 1.80 7.96 -52.49 -0.42 1.38 16 7 C 0.04 1.11 5.32 -17.82 -0.09 1.02 16 8 N -0.89 -25.89 13.70 55.43 0.76 -25.13 16 9 Si 1.04 23.81 26.27 -169.99 -4.47 19.34 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -5.65 5.67 56.52 0.32 -5.33 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.66 -12.91 5.02 -55.41 -0.28 -13.19 16 14 C 0.50 8.98 6.48 -11.65 -0.08 8.91 16 15 O -0.53 -10.01 13.61 5.49 0.07 -9.94 16 16 C 0.51 8.17 7.85 -11.65 -0.09 8.08 16 17 O -0.49 -8.34 13.60 5.46 0.07 -8.26 16 18 N -0.63 -8.55 4.72 -11.80 -0.06 -8.61 16 19 C 0.31 4.23 7.02 -152.85 -1.07 3.16 16 20 C -0.28 -3.91 9.65 -39.77 -0.38 -4.30 16 21 C 0.06 0.67 12.00 -17.43 -0.21 0.46 16 22 N -0.29 -3.68 11.64 30.59 0.36 -3.32 16 23 N -0.38 -4.58 3.48 -47.61 -0.17 -4.74 16 24 C 0.18 1.60 1.06 -131.82 -0.14 1.46 16 25 C -0.17 -1.34 8.47 37.16 0.31 -1.03 16 26 C -0.14 -1.05 7.99 37.16 0.30 -0.75 16 27 C -0.17 -1.37 8.48 37.16 0.31 -1.05 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.81 5.63 -51.93 -0.29 0.52 16 30 H 0.05 1.01 7.88 -51.93 -0.41 0.60 16 31 H 0.07 1.63 4.74 -51.92 -0.25 1.39 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.27 7.80 8.73 -40.82 -0.36 7.44 16 34 H 0.41 7.72 7.99 -40.82 -0.33 7.39 16 35 H 0.42 5.09 4.43 -40.82 -0.18 4.91 16 36 H 0.17 2.57 5.83 -52.49 -0.31 2.27 16 37 H 0.19 1.56 8.06 -52.48 -0.42 1.14 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.56 5.90 -51.93 -0.31 0.25 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.57 5.90 -51.93 -0.31 0.26 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 363.45 15.07 5.48 5.48 Total: -1.00 -29.96 363.45 -6.20 -36.16 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -6.58 Total: 12.81 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -1.40 Total: -0.61 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.62 Total: -54.98 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.15 Total: -18.20 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -4.47 Total: 19.34 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.96 -6.20 -36.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128239855.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.267 kcal (2) G-P(sol) polarization free energy of solvation -29.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds