Wall clock time and date at job start Tue Mar 31 2020 12:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46914 * 2 1 4 4 H 1.08993 * 109.47295 * 305.55300 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55318 * 3 2 1 6 6 H 1.07996 * 120.00449 * 245.60469 * 5 3 2 7 7 C 1.37879 * 120.00154 * 65.60852 * 5 3 2 8 8 N 1.31514 * 120.00263 * 196.28627 * 7 5 3 9 9 Si 1.86803 * 120.00061 * 16.28010 * 7 5 3 10 10 H 1.48499 * 109.47518 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.47391 * 300.00728 * 9 7 5 12 12 H 1.48507 * 109.46974 * 60.00396 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55540 * 3 2 1 14 14 C 1.34771 * 119.99789 * 274.99899 * 13 3 2 15 15 O 1.21360 * 120.00402 * 0.02562 * 14 13 3 16 16 C 1.49307 * 119.99962 * 179.97438 * 14 13 3 17 17 O 1.21397 * 119.99881 * 0.02562 * 16 14 13 18 18 N 1.34774 * 120.00374 * 179.97438 * 16 14 13 19 19 C 1.39201 * 120.00124 * 180.02562 * 18 16 14 20 20 C 1.36204 * 126.27600 * 0.02685 * 19 18 16 21 21 C 1.39689 * 107.86104 * 179.97438 * 20 19 18 22 22 N 1.30841 * 108.46295 * 359.97438 * 21 20 19 23 23 N 1.35858 * 126.26744 * 179.71084 * 19 18 16 24 24 C 1.46503 * 126.10165 * 0.04227 * 23 19 18 25 25 C 1.52997 * 109.47162 * 59.99215 * 24 23 19 26 26 C 1.52999 * 109.47036 * 179.97438 * 24 23 19 27 27 C 1.53001 * 109.46548 * 299.99580 * 24 23 19 28 28 H 1.09005 * 109.47083 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47210 * 299.99485 * 1 2 3 30 30 H 1.08998 * 109.47621 * 60.00436 * 1 2 3 31 31 H 1.09008 * 109.47032 * 240.00580 * 2 1 3 32 32 H 1.09000 * 109.47548 * 120.00343 * 2 1 3 33 33 H 0.96993 * 119.99752 * 354.83016 * 8 7 5 34 34 H 0.97002 * 119.99591 * 94.99593 * 13 3 2 35 35 H 0.97010 * 119.99795 * 0.02562 * 18 16 14 36 36 H 1.08000 * 126.06792 * 359.97438 * 20 19 18 37 37 H 1.08010 * 125.76950 * 180.02562 * 21 20 19 38 38 H 1.08996 * 109.47028 * 60.00596 * 25 24 23 39 39 H 1.09003 * 109.46933 * 179.97438 * 25 24 23 40 40 H 1.09002 * 109.47566 * 300.00254 * 25 24 23 41 41 H 1.09001 * 109.47548 * 59.99483 * 26 24 23 42 42 H 1.09001 * 109.46590 * 179.97438 * 26 24 23 43 43 H 1.09004 * 109.46804 * 299.99195 * 26 24 23 44 44 H 1.09000 * 109.47766 * 60.00136 * 27 24 23 45 45 H 1.09006 * 109.46900 * 180.02562 * 27 24 23 46 46 H 1.09001 * 109.47095 * 299.99941 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4448 -0.1375 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2987 8 7 5.4072 0.6862 -1.3142 9 14 3.1039 0.7978 -2.8499 10 1 3.9632 0.2936 -3.9511 11 1 2.0023 -0.1664 -2.6011 12 1 2.5326 2.1146 -3.2306 13 7 1.6638 2.0934 1.2574 14 6 0.4476 2.6599 1.3854 15 8 -0.3362 2.6304 0.4593 16 6 0.0640 3.3228 2.6671 17 8 0.8478 3.3519 3.5937 18 7 -1.1520 3.8897 2.7951 19 6 -1.5093 4.5082 3.9898 20 6 -0.7348 4.6150 5.1051 21 6 -1.4692 5.3054 6.0722 22 7 -2.6386 5.6060 5.5681 23 7 -2.6924 5.1212 4.2550 24 6 -3.8239 5.2494 3.3332 25 6 -4.3118 3.8571 2.9279 26 6 -4.9603 6.0068 4.0229 27 6 -3.3812 6.0177 2.0864 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 5.9548 0.8552 -0.5317 34 1 2.2901 2.1166 1.9978 35 1 -1.7782 3.8668 2.0545 36 1 0.2689 4.2337 5.2211 37 1 -1.1290 5.5504 7.0676 38 1 -4.6271 3.3098 3.8161 39 1 -5.1539 3.9525 2.2424 40 1 -3.5023 3.3171 2.4367 41 1 -4.6129 6.9987 4.3121 42 1 -5.8019 6.1026 3.3369 43 1 -5.2755 5.4590 4.9110 44 1 -2.5717 5.4777 1.5951 45 1 -4.2231 6.1135 1.4007 46 1 -3.0335 7.0096 2.3751 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128239855.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:56 Heat of formation + Delta-G solvation = -7.852258 kcal Electronic energy + Delta-G solvation = -28182.428101 eV Core-core repulsion = 24301.578670 eV Total energy + Delta-G solvation = -3880.849431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.89729 -41.62499 -39.89938 -37.88415 -37.38381 -36.19499 -34.49739 -33.21465 -31.34256 -30.40014 -29.33966 -28.50434 -28.38820 -26.41305 -24.29451 -23.48732 -22.98024 -21.69921 -21.29031 -21.10794 -19.96581 -18.85221 -18.27589 -17.78936 -17.45361 -16.93428 -16.50088 -16.40089 -15.87273 -15.50241 -15.38040 -15.16271 -14.71236 -14.67765 -14.55057 -14.50347 -14.18269 -14.05968 -13.62670 -13.35537 -13.27835 -13.10446 -12.89666 -12.86253 -12.68337 -12.50767 -12.35662 -12.29421 -12.25011 -12.11956 -11.79287 -11.60229 -11.40366 -11.13075 -10.78023 -10.49858 -10.07499 -10.02745 -9.30518 -8.82601 -6.47916 -0.06820 0.70030 0.92749 1.47734 1.53428 1.58089 1.72057 1.79258 2.09093 2.43095 2.45940 3.00313 3.27175 3.32443 3.65850 3.78783 3.95427 4.16043 4.28855 4.30241 4.37310 4.41019 4.47757 4.55715 4.61648 4.62901 4.70844 4.77278 4.79498 4.79540 4.98283 5.02460 5.08102 5.11075 5.12387 5.22026 5.25938 5.37085 5.50016 5.59070 5.66020 5.76550 5.89597 5.97938 6.33201 6.46583 6.56673 6.67765 6.89700 7.29869 8.57848 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021769 B = 0.003154 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.942960 B = 8876.318534 C = 9533.722643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.140 4.140 3 C 0.251 3.749 4 H 0.041 0.959 5 C -0.620 4.620 6 H 0.036 0.964 7 C -0.005 4.005 8 N -0.926 5.926 9 Si 1.071 2.929 10 H -0.286 1.286 11 H -0.236 1.236 12 H -0.268 1.268 13 N -0.665 5.665 14 C 0.506 3.494 15 O -0.535 6.535 16 C 0.518 3.482 17 O -0.500 6.500 18 N -0.613 5.613 19 C 0.293 3.707 20 C -0.297 4.297 21 C 0.058 3.942 22 N -0.297 5.297 23 N -0.373 5.373 24 C 0.164 3.836 25 C -0.163 4.163 26 C -0.131 4.131 27 C -0.164 4.164 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.257 0.743 34 H 0.409 0.591 35 H 0.428 0.572 36 H 0.159 0.841 37 H 0.216 0.784 38 H 0.062 0.938 39 H 0.114 0.886 40 H 0.049 0.951 41 H 0.059 0.941 42 H 0.101 0.899 43 H 0.060 0.940 44 H 0.049 0.951 45 H 0.114 0.886 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.456 8.224 8.722 25.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.178 4.178 3 C 0.147 3.853 4 H 0.058 0.942 5 C -0.658 4.658 6 H 0.055 0.945 7 C -0.205 4.205 8 N -0.561 5.561 9 Si 0.893 3.107 10 H -0.211 1.211 11 H -0.160 1.160 12 H -0.193 1.193 13 N -0.314 5.314 14 C 0.286 3.714 15 O -0.413 6.413 16 C 0.300 3.700 17 O -0.372 6.372 18 N -0.264 5.264 19 C 0.073 3.927 20 C -0.329 4.329 21 C -0.128 4.128 22 N -0.118 5.118 23 N -0.162 5.162 24 C 0.083 3.917 25 C -0.221 4.221 26 C -0.188 4.188 27 C -0.222 4.222 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.245 0.755 35 H 0.270 0.730 36 H 0.177 0.823 37 H 0.232 0.768 38 H 0.081 0.919 39 H 0.132 0.868 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.120 0.880 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.133 0.867 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.556 8.225 7.222 25.975 hybrid contribution 1.783 0.154 1.705 2.472 sum -21.772 8.379 8.928 24.979 Atomic orbital electron populations 1.21812 0.95034 1.00989 1.01617 1.22300 0.95826 0.97651 1.02070 1.19041 0.93915 0.90167 0.82137 0.94157 1.22258 0.91307 1.48771 1.03436 0.94547 1.26961 0.97691 0.91773 1.04121 1.70979 1.08157 1.42962 1.33991 0.83754 0.75315 0.79071 0.72607 1.21138 1.16010 1.19300 1.46030 1.14152 1.53046 1.18161 1.19604 0.83737 0.80741 0.87362 1.90729 1.50623 1.59512 1.40462 1.20326 0.81650 0.79317 0.88733 1.90714 1.50220 1.56012 1.40272 1.42590 1.16630 1.53172 1.14037 1.18152 0.89371 0.97039 0.88099 1.21765 1.03883 1.14100 0.93144 1.24200 0.90671 0.96717 1.01166 1.77344 1.21431 1.22849 0.90221 1.49443 1.10852 1.44507 1.11444 1.21194 0.84452 0.98080 0.88018 1.22372 1.02945 0.93781 1.03049 1.21823 0.96051 0.99843 1.01129 1.22377 1.03501 1.00175 0.96163 0.92149 0.93671 0.92893 0.91432 0.92811 0.93349 0.75534 0.73016 0.82313 0.76772 0.91867 0.86768 0.93161 0.92178 0.87995 0.92076 0.93236 0.86745 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 8.53 71.98 0.61 -4.07 16 2 C -0.14 -5.64 5.28 30.59 0.16 -5.48 16 3 C 0.25 11.16 1.82 44.25 0.08 11.24 16 4 H 0.04 1.87 6.26 -2.39 -0.01 1.86 16 5 C -0.62 -32.87 9.01 25.60 0.23 -32.63 16 6 H 0.04 2.09 7.96 -2.91 -0.02 2.07 16 7 C 0.00 -0.26 5.32 84.66 0.45 0.19 16 8 N -0.93 -55.12 13.70 21.45 0.29 -54.83 16 9 Si 1.07 47.18 26.27 68.60 1.80 48.98 16 10 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.24 -9.13 5.67 99.48 0.56 -8.57 16 12 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 13 N -0.66 -26.01 5.02 -447.59 -2.25 -28.26 16 14 C 0.51 17.72 6.48 87.23 0.57 18.29 16 15 O -0.53 -19.23 13.61 -3.28 -0.04 -19.28 16 16 C 0.52 16.26 7.85 87.23 0.68 16.94 16 17 O -0.50 -17.20 13.60 -3.39 -0.05 -17.24 16 18 N -0.61 -16.05 4.72 -309.58 -1.46 -17.51 16 19 C 0.29 7.79 7.02 131.24 0.92 8.71 16 20 C -0.30 -8.18 9.65 22.15 0.21 -7.96 16 21 C 0.06 1.32 12.00 85.19 1.02 2.34 16 22 N -0.30 -7.16 11.64 -57.13 -0.66 -7.82 16 23 N -0.37 -8.51 3.48 -304.53 -1.06 -9.57 16 24 C 0.16 2.62 1.06 3.60 0.00 2.62 16 25 C -0.16 -2.22 8.47 71.98 0.61 -1.61 16 26 C -0.13 -1.68 7.99 71.98 0.57 -1.10 16 27 C -0.16 -2.31 8.48 71.98 0.61 -1.70 16 28 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.04 1.52 5.63 -2.39 -0.01 1.51 16 30 H 0.05 1.82 7.88 -2.39 -0.02 1.80 16 31 H 0.07 2.81 4.74 -2.38 -0.01 2.80 16 32 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.26 15.48 8.73 -92.71 -0.81 14.67 16 34 H 0.41 15.75 7.99 -92.71 -0.74 15.00 16 35 H 0.43 9.75 4.43 -92.70 -0.41 9.33 16 36 H 0.16 4.79 5.83 -2.91 -0.02 4.78 16 37 H 0.22 3.23 8.06 -2.91 -0.02 3.20 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.05 0.80 5.90 -2.39 -0.01 0.79 16 41 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.05 0.82 5.90 -2.39 -0.01 0.81 16 45 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 46 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -65.25 363.45 3.00 -62.25 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: -0.31 Total: 37.51 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 6.74 Total: 5.77 kcal Atomic # 7 Polarization: -112.85 SS G_CDS: -5.14 Total: -117.99 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -0.09 Total: -36.52 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.80 Total: 48.98 kcal Total: -65.25 3.00 -62.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128239855.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.394 kcal (2) G-P(sol) polarization free energy of solvation -65.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds