Wall clock time and date at job start Tue Mar 31 2020 12:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31513 * 119.99969 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99840 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47167 * 89.99961 * 9 7 5 11 11 H 1.48500 * 109.47028 * 210.00109 * 9 7 5 12 12 H 1.48497 * 109.47377 * 330.00144 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21364 * 120.00115 * 359.97438 * 14 13 3 16 16 C 1.49307 * 120.00180 * 180.02562 * 14 13 3 17 17 O 1.21397 * 119.99534 * 359.97438 * 16 14 13 18 18 N 1.34776 * 120.00465 * 179.97438 * 16 14 13 19 19 C 1.39192 * 120.00263 * 179.97438 * 18 16 14 20 20 C 1.36213 * 126.27128 * 359.69015 * 19 18 16 21 21 C 1.39696 * 107.85878 * 179.90652 * 20 19 18 22 22 N 1.30857 * 108.45688 * 0.36019 * 21 20 19 23 23 N 1.35853 * 126.27012 * 180.02562 * 19 18 16 24 24 C 1.46498 * 126.09902 * 359.93194 * 23 19 18 25 25 C 1.53013 * 109.46575 * 90.00911 * 24 23 19 26 26 C 1.53004 * 109.46751 * 175.00050 * 25 24 23 27 27 C 1.52998 * 109.46709 * 294.99591 * 25 24 23 28 28 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 30 30 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 31 31 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 32 32 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 33 33 H 0.96999 * 119.99716 * 179.97438 * 8 7 5 34 34 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 35 35 H 0.97007 * 119.99073 * 0.02562 * 18 16 14 36 36 H 1.07995 * 126.07459 * 0.03018 * 20 19 18 37 37 H 1.08000 * 125.76996 * 180.14305 * 21 20 19 38 38 H 1.08995 * 109.47433 * 210.00358 * 24 23 19 39 39 H 1.09000 * 109.47372 * 330.01268 * 24 23 19 40 40 H 1.08993 * 109.46891 * 54.99575 * 25 24 23 41 41 H 1.08992 * 109.47089 * 60.00265 * 26 25 24 42 42 H 1.09003 * 109.46395 * 179.97438 * 26 25 24 43 43 H 1.08995 * 109.47057 * 299.99215 * 26 25 24 44 44 H 1.08992 * 109.47937 * 300.00228 * 27 25 24 45 45 H 1.09001 * 109.47360 * 60.00580 * 27 25 24 46 46 H 1.09003 * 109.47060 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 5.4539 0.8806 1.3364 9 14 3.0963 0.1102 2.5707 10 1 2.8744 -1.3258 2.2647 11 1 3.7941 0.2362 3.8755 12 1 1.7881 0.8095 2.6395 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3402 2.6319 -0.4339 16 6 0.0399 3.3312 -2.6431 17 8 0.8152 3.3633 -3.5767 18 7 -1.1776 3.8977 -2.7585 19 6 -1.5458 4.5199 -3.9480 20 6 -0.7790 4.6358 -5.0678 21 6 -1.5242 5.3246 -6.0279 22 7 -2.6898 5.6219 -5.5127 23 7 -2.7335 5.1285 -4.2025 24 6 -3.8594 5.2467 -3.2728 25 6 -3.7169 6.5356 -2.4605 26 6 -4.9538 6.7226 -1.5795 27 6 -2.4706 6.4467 -1.5776 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 5.8769 0.4828 2.1133 34 1 2.2720 2.1231 -1.9978 35 1 -1.7969 3.8724 -2.0123 36 1 0.2257 4.2599 -5.1922 37 1 -1.1929 5.5730 -7.0253 38 1 -4.7932 5.2727 -3.8344 39 1 -3.8649 4.3908 -2.5979 40 1 -3.6221 7.3837 -3.1386 41 1 -5.0485 5.8745 -0.9015 42 1 -4.8520 7.6406 -1.0006 43 1 -5.8417 6.7859 -2.2086 44 1 -2.5652 5.5986 -0.8996 45 1 -1.5894 6.3135 -2.2052 46 1 -2.3687 7.3651 -0.9993 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128425445.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:00 Heat of formation + Delta-G solvation = 11.834604 kcal Electronic energy + Delta-G solvation = -27990.829337 eV Core-core repulsion = 24110.833592 eV Total energy + Delta-G solvation = -3879.995745 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.77111 -40.29665 -38.50149 -36.87498 -35.85298 -34.92904 -32.51386 -31.97963 -31.66205 -29.37208 -27.82412 -27.57545 -26.56317 -25.04658 -22.81179 -22.07576 -21.47718 -20.44926 -20.06536 -19.77043 -18.88499 -17.62267 -16.83512 -16.27005 -16.16120 -15.70120 -15.50445 -15.25545 -15.13623 -14.57436 -14.18428 -13.99094 -13.66600 -13.65326 -13.33137 -13.16595 -13.09197 -12.63144 -12.51062 -12.31516 -12.10617 -11.95052 -11.73405 -11.51489 -11.38836 -11.24229 -11.18833 -11.10475 -11.01887 -10.76267 -10.66728 -10.05367 -9.68190 -9.38855 -9.31276 -9.10845 -8.88331 -8.38835 -8.23829 -6.29383 -4.33854 1.19774 1.81374 2.01480 2.66938 2.82381 3.15771 3.28500 3.30251 3.43831 3.74802 4.16635 4.22083 4.32938 4.58146 4.64749 4.74853 4.91041 5.02616 5.07360 5.20674 5.25020 5.29579 5.42563 5.48493 5.50282 5.69615 5.75856 5.79833 5.85374 5.87698 5.92013 5.99084 6.00989 6.46159 6.52959 6.61105 6.62384 6.71842 6.75144 6.86928 7.00698 7.09931 7.30943 7.53947 7.64235 7.91657 8.30174 8.39466 8.70861 9.28506 10.82403 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018676 B = 0.003172 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.903851 B = 8825.632277 C = 9557.123975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C 0.241 3.759 4 H 0.056 0.944 5 C -0.541 4.541 6 H 0.084 0.916 7 C 0.081 3.919 8 N -0.887 5.887 9 Si 0.882 3.118 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.260 1.260 13 N -0.656 5.656 14 C 0.502 3.498 15 O -0.530 6.530 16 C 0.514 3.486 17 O -0.484 6.484 18 N -0.628 5.628 19 C 0.309 3.691 20 C -0.279 4.279 21 C 0.059 3.941 22 N -0.291 5.291 23 N -0.385 5.385 24 C 0.133 3.867 25 C -0.113 4.113 26 C -0.145 4.145 27 C -0.159 4.159 28 H 0.036 0.964 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.269 0.731 34 H 0.410 0.590 35 H 0.421 0.579 36 H 0.174 0.826 37 H 0.186 0.814 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.415 8.061 -8.218 21.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C 0.139 3.861 4 H 0.073 0.927 5 C -0.579 4.579 6 H 0.102 0.898 7 C -0.123 4.123 8 N -0.523 5.523 9 Si 0.711 3.289 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.184 1.184 13 N -0.305 5.305 14 C 0.280 3.720 15 O -0.408 6.408 16 C 0.295 3.705 17 O -0.354 6.354 18 N -0.278 5.278 19 C 0.089 3.911 20 C -0.310 4.310 21 C -0.127 4.127 22 N -0.113 5.113 23 N -0.173 5.173 24 C 0.012 3.988 25 C -0.133 4.133 26 C -0.203 4.203 27 C -0.216 4.216 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.245 0.755 35 H 0.259 0.741 36 H 0.191 0.809 37 H 0.203 0.797 38 H 0.118 0.882 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.370 8.503 -8.148 22.669 hybrid contribution 0.322 -0.865 0.940 1.318 sum -19.047 7.637 -7.208 21.750 Atomic orbital electron populations 1.21897 0.96931 0.99498 1.01985 1.22324 0.94361 0.99539 1.01750 1.19388 0.96312 0.88714 0.81700 0.92677 1.20994 0.88126 1.40484 1.08264 0.89791 1.24816 0.94899 0.95016 0.97589 1.69857 1.08681 1.43964 1.29782 0.86919 0.80892 0.80027 0.81014 1.20080 1.21978 1.18448 1.46107 1.13409 1.52173 1.18811 1.19406 0.84462 0.81354 0.86757 1.90750 1.51225 1.59512 1.39323 1.20794 0.80887 0.79016 0.89767 1.90708 1.50062 1.55152 1.39483 1.42634 1.17544 1.53970 1.13654 1.18086 0.88253 0.96307 0.88416 1.21718 1.03952 1.13274 0.92103 1.23756 0.91273 0.97445 1.00238 1.77415 1.21542 1.22575 0.89770 1.48805 1.11217 1.45696 1.11600 1.21841 0.87896 0.98875 0.90211 1.21570 0.96599 0.97648 0.97468 1.21784 0.96461 1.02580 0.99501 1.22008 0.97214 1.02794 0.99610 0.94518 0.92644 0.93339 0.91814 0.92235 0.92090 0.75463 0.74106 0.80876 0.79712 0.88200 0.89447 0.90008 0.92094 0.91801 0.92240 0.92131 0.92426 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 8.51 37.16 0.32 -2.34 16 2 C -0.14 -2.92 5.11 -26.73 -0.14 -3.06 16 3 C 0.24 5.35 1.83 -69.08 -0.13 5.23 16 4 H 0.06 1.32 6.63 -51.93 -0.34 0.97 16 5 C -0.54 -14.02 9.31 -34.44 -0.32 -14.34 16 6 H 0.08 2.32 7.98 -52.49 -0.42 1.90 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -25.51 13.96 55.43 0.77 -24.73 16 9 Si 0.88 20.61 24.41 -169.99 -4.15 16.46 16 10 H -0.27 -6.21 6.83 56.52 0.39 -5.82 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.26 -5.90 6.53 56.52 0.37 -5.53 16 13 N -0.66 -12.48 5.01 -55.41 -0.28 -12.75 16 14 C 0.50 8.69 6.45 -11.65 -0.08 8.61 16 15 O -0.53 -9.71 13.61 5.48 0.07 -9.64 16 16 C 0.51 7.83 7.85 -11.65 -0.09 7.74 16 17 O -0.48 -7.98 13.60 5.46 0.07 -7.91 16 18 N -0.63 -8.03 4.62 -11.80 -0.05 -8.09 16 19 C 0.31 4.02 6.23 -152.86 -0.95 3.07 16 20 C -0.28 -3.76 9.65 -39.77 -0.38 -4.14 16 21 C 0.06 0.69 12.00 -17.42 -0.21 0.48 16 22 N -0.29 -3.67 12.56 30.59 0.38 -3.29 16 23 N -0.38 -4.46 3.46 -60.29 -0.21 -4.67 16 24 C 0.13 1.12 5.70 -4.04 -0.02 1.09 16 25 C -0.11 -0.88 3.13 -90.61 -0.28 -1.17 16 26 C -0.15 -0.86 9.19 37.16 0.34 -0.52 16 27 C -0.16 -1.45 8.09 37.16 0.30 -1.15 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 1.04 7.85 -51.93 -0.41 0.64 16 30 H 0.05 0.85 5.64 -51.93 -0.29 0.56 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.06 1.30 3.22 -51.93 -0.17 1.13 16 33 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.41 7.43 8.01 -40.82 -0.33 7.11 16 35 H 0.42 4.71 6.30 -40.82 -0.26 4.45 16 36 H 0.17 2.50 5.83 -52.49 -0.31 2.19 16 37 H 0.19 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.62 7.52 -51.93 -0.39 0.23 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 0.53 7.56 -51.93 -0.39 0.13 16 45 H 0.06 0.65 6.14 -51.93 -0.32 0.33 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 364.38 15.07 5.49 5.49 Total: -1.00 -29.94 364.38 -6.24 -36.19 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -6.61 Total: 11.34 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -1.74 Total: 1.61 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.62 Total: -53.53 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: 0.15 Total: -17.55 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.15 Total: 16.46 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.94 -6.24 -36.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128425445.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.023 kcal (2) G-P(sol) polarization free energy of solvation -29.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds