Wall clock time and date at job start Tue Mar 31 2020 12:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31513 * 119.99969 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99840 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47167 * 89.99961 * 9 7 5 11 11 H 1.48500 * 109.47028 * 210.00109 * 9 7 5 12 12 H 1.48497 * 109.47377 * 330.00144 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21364 * 120.00115 * 359.97438 * 14 13 3 16 16 C 1.49307 * 120.00180 * 180.02562 * 14 13 3 17 17 O 1.21397 * 119.99534 * 359.97438 * 16 14 13 18 18 N 1.34776 * 120.00465 * 179.97438 * 16 14 13 19 19 C 1.39192 * 120.00263 * 179.97438 * 18 16 14 20 20 C 1.36213 * 126.27128 * 359.69015 * 19 18 16 21 21 C 1.39696 * 107.85878 * 179.90652 * 20 19 18 22 22 N 1.30857 * 108.45688 * 0.36019 * 21 20 19 23 23 N 1.35853 * 126.27012 * 180.02562 * 19 18 16 24 24 C 1.46498 * 126.09902 * 359.93194 * 23 19 18 25 25 C 1.53013 * 109.46575 * 90.00911 * 24 23 19 26 26 C 1.53004 * 109.46751 * 175.00050 * 25 24 23 27 27 C 1.52998 * 109.46709 * 294.99591 * 25 24 23 28 28 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 30 30 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 31 31 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 32 32 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 33 33 H 0.96999 * 119.99716 * 179.97438 * 8 7 5 34 34 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 35 35 H 0.97007 * 119.99073 * 0.02562 * 18 16 14 36 36 H 1.07995 * 126.07459 * 0.03018 * 20 19 18 37 37 H 1.08000 * 125.76996 * 180.14305 * 21 20 19 38 38 H 1.08995 * 109.47433 * 210.00358 * 24 23 19 39 39 H 1.09000 * 109.47372 * 330.01268 * 24 23 19 40 40 H 1.08993 * 109.46891 * 54.99575 * 25 24 23 41 41 H 1.08992 * 109.47089 * 60.00265 * 26 25 24 42 42 H 1.09003 * 109.46395 * 179.97438 * 26 25 24 43 43 H 1.08995 * 109.47057 * 299.99215 * 26 25 24 44 44 H 1.08992 * 109.47937 * 300.00228 * 27 25 24 45 45 H 1.09001 * 109.47360 * 60.00580 * 27 25 24 46 46 H 1.09003 * 109.47060 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 5.4539 0.8806 1.3364 9 14 3.0963 0.1102 2.5707 10 1 2.8744 -1.3258 2.2647 11 1 3.7941 0.2362 3.8755 12 1 1.7881 0.8095 2.6395 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3402 2.6319 -0.4339 16 6 0.0399 3.3312 -2.6431 17 8 0.8152 3.3633 -3.5767 18 7 -1.1776 3.8977 -2.7585 19 6 -1.5458 4.5199 -3.9480 20 6 -0.7790 4.6358 -5.0678 21 6 -1.5242 5.3246 -6.0279 22 7 -2.6898 5.6219 -5.5127 23 7 -2.7335 5.1285 -4.2025 24 6 -3.8594 5.2467 -3.2728 25 6 -3.7169 6.5356 -2.4605 26 6 -4.9538 6.7226 -1.5795 27 6 -2.4706 6.4467 -1.5776 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 5.8769 0.4828 2.1133 34 1 2.2720 2.1231 -1.9978 35 1 -1.7969 3.8724 -2.0123 36 1 0.2257 4.2599 -5.1922 37 1 -1.1929 5.5730 -7.0253 38 1 -4.7932 5.2727 -3.8344 39 1 -3.8649 4.3908 -2.5979 40 1 -3.6221 7.3837 -3.1386 41 1 -5.0485 5.8745 -0.9015 42 1 -4.8520 7.6406 -1.0006 43 1 -5.8417 6.7859 -2.2086 44 1 -2.5652 5.5986 -0.8996 45 1 -1.5894 6.3135 -2.2052 46 1 -2.3687 7.3651 -0.9993 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128425445.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:59 Heat of formation + Delta-G solvation = -8.494192 kcal Electronic energy + Delta-G solvation = -27991.710860 eV Core-core repulsion = 24110.833592 eV Total energy + Delta-G solvation = -3880.877267 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.80383 -41.57090 -39.86550 -37.61397 -37.37125 -36.15022 -34.42457 -33.27719 -32.79428 -30.43443 -29.57548 -28.21371 -27.29561 -26.42837 -24.52980 -23.17783 -22.54512 -21.68837 -21.21166 -20.95838 -20.08122 -18.93226 -18.33125 -17.68964 -17.53183 -17.17672 -16.53989 -16.33149 -16.10762 -15.88023 -15.55785 -15.16228 -14.93362 -14.87419 -14.48092 -14.21561 -14.11414 -13.87917 -13.79194 -13.68471 -13.19206 -13.02911 -12.98199 -12.83352 -12.63825 -12.53803 -12.37651 -12.16000 -11.96491 -11.85430 -11.83528 -11.64903 -11.36958 -11.28935 -10.88590 -10.73081 -10.02368 -9.98857 -9.27946 -8.37528 -6.45704 -0.03009 0.71862 0.94521 1.30903 1.38304 1.47362 1.66303 1.81418 2.13066 2.26944 2.50471 2.97732 3.30622 3.46139 3.68944 3.91993 3.94222 4.15331 4.21440 4.30605 4.32690 4.40729 4.45410 4.53608 4.54805 4.70845 4.74828 4.77703 4.80994 4.95099 4.99270 5.02258 5.08346 5.12047 5.16627 5.23778 5.26499 5.35158 5.45492 5.50055 5.65485 5.75120 5.85684 6.07501 6.40710 6.53810 6.64635 6.68149 6.91404 7.21694 8.77741 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018676 B = 0.003172 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.903851 B = 8825.632277 C = 9557.123975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.141 4.141 3 C 0.250 3.750 4 H 0.042 0.958 5 C -0.541 4.541 6 H 0.053 0.947 7 C 0.029 3.971 8 N -0.934 5.934 9 Si 0.939 3.061 10 H -0.259 1.259 11 H -0.295 1.295 12 H -0.249 1.249 13 N -0.663 5.663 14 C 0.508 3.492 15 O -0.535 6.535 16 C 0.522 3.478 17 O -0.498 6.498 18 N -0.611 5.611 19 C 0.298 3.702 20 C -0.297 4.297 21 C 0.062 3.938 22 N -0.304 5.304 23 N -0.379 5.379 24 C 0.123 3.877 25 C -0.105 4.105 26 C -0.141 4.141 27 C -0.158 4.158 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.271 0.729 34 H 0.412 0.588 35 H 0.429 0.571 36 H 0.161 0.839 37 H 0.216 0.784 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.033 0.967 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.413 7.859 -8.200 24.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.180 4.180 3 C 0.146 3.854 4 H 0.060 0.940 5 C -0.579 4.579 6 H 0.071 0.929 7 C -0.171 4.171 8 N -0.572 5.572 9 Si 0.765 3.235 10 H -0.185 1.185 11 H -0.222 1.222 12 H -0.172 1.172 13 N -0.313 5.313 14 C 0.288 3.712 15 O -0.414 6.414 16 C 0.303 3.697 17 O -0.370 6.370 18 N -0.261 5.261 19 C 0.078 3.922 20 C -0.329 4.329 21 C -0.124 4.124 22 N -0.126 5.126 23 N -0.167 5.167 24 C 0.003 3.997 25 C -0.124 4.124 26 C -0.199 4.199 27 C -0.216 4.216 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.249 0.751 35 H 0.269 0.731 36 H 0.179 0.821 37 H 0.232 0.768 38 H 0.133 0.867 39 H 0.121 0.879 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.052 0.948 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.432 8.323 -8.144 25.274 hybrid contribution 1.246 -0.691 0.850 1.659 sum -21.186 7.631 -7.294 23.670 Atomic orbital electron populations 1.21810 0.94675 1.01177 1.01830 1.22250 0.96331 0.97846 1.01530 1.19056 0.93635 0.90092 0.82630 0.94025 1.21238 0.90212 1.39260 1.07226 0.92911 1.25605 0.95831 0.95683 0.99965 1.69987 1.10570 1.45783 1.30871 0.85995 0.79579 0.80016 0.77879 1.18451 1.22243 1.17242 1.45918 1.14410 1.52964 1.17981 1.19584 0.83615 0.80649 0.87390 1.90742 1.51266 1.59498 1.39864 1.20220 0.81568 0.79278 0.88631 1.90725 1.50725 1.55935 1.39586 1.42352 1.16707 1.53028 1.14032 1.18087 0.89094 0.96820 0.88163 1.21775 1.03874 1.14114 0.93102 1.24206 0.90550 0.96456 1.01179 1.77387 1.22005 1.22877 0.90308 1.49031 1.11289 1.44771 1.11647 1.22196 0.87441 0.99769 0.90258 1.21484 0.96920 0.96858 0.97166 1.21757 0.95712 1.02990 0.99402 1.22004 0.96894 1.03173 0.99514 0.91961 0.93230 0.93005 0.91392 0.93106 0.91978 0.75148 0.73103 0.82123 0.76765 0.86706 0.87869 0.91283 0.91333 0.91656 0.91102 0.91633 0.94811 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 8.51 71.98 0.61 -4.02 16 2 C -0.14 -5.60 5.11 30.60 0.16 -5.44 16 3 C 0.25 10.97 1.83 44.25 0.08 11.05 16 4 H 0.04 1.96 6.63 -2.39 -0.02 1.95 16 5 C -0.54 -28.63 9.31 25.60 0.24 -28.39 16 6 H 0.05 3.05 7.98 -2.91 -0.02 3.02 16 7 C 0.03 1.60 5.45 84.65 0.46 2.06 16 8 N -0.93 -55.06 13.96 21.45 0.30 -54.76 16 9 Si 0.94 42.16 24.41 68.60 1.67 43.84 16 10 H -0.26 -10.93 6.83 99.48 0.68 -10.25 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 12 H -0.25 -10.60 6.53 99.48 0.65 -9.95 16 13 N -0.66 -25.09 5.01 -447.57 -2.24 -27.33 16 14 C 0.51 17.12 6.45 87.22 0.56 17.68 16 15 O -0.54 -18.76 13.61 -3.29 -0.04 -18.80 16 16 C 0.52 15.51 7.85 87.23 0.68 16.20 16 17 O -0.50 -16.35 13.60 -3.39 -0.05 -16.39 16 18 N -0.61 -14.87 4.62 -309.58 -1.43 -16.30 16 19 C 0.30 7.44 6.23 131.25 0.82 8.25 16 20 C -0.30 -7.79 9.65 22.15 0.21 -7.58 16 21 C 0.06 1.35 12.00 85.19 1.02 2.37 16 22 N -0.30 -7.16 12.56 -57.13 -0.72 -7.87 16 23 N -0.38 -8.18 3.46 -344.66 -1.19 -9.37 16 24 C 0.12 1.78 5.70 86.38 0.49 2.27 16 25 C -0.10 -1.44 3.13 -10.79 -0.03 -1.47 16 26 C -0.14 -1.30 9.19 71.98 0.66 -0.64 16 27 C -0.16 -2.68 8.09 71.98 0.58 -2.10 16 28 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.05 1.72 7.85 -2.39 -0.02 1.70 16 30 H 0.05 1.69 5.64 -2.39 -0.01 1.68 16 31 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.05 2.11 3.22 -2.39 -0.01 2.10 16 33 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 34 H 0.41 15.18 8.01 -92.71 -0.74 14.44 16 35 H 0.43 8.84 6.30 -92.70 -0.58 8.25 16 36 H 0.16 4.64 5.83 -2.91 -0.02 4.62 16 37 H 0.22 3.08 8.06 -2.91 -0.02 3.05 16 38 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.10 1.17 7.52 -2.39 -0.02 1.15 16 40 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 41 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.06 1.02 7.56 -2.39 -0.02 1.00 16 45 H 0.03 0.73 6.14 -2.39 -0.01 0.71 16 46 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -64.63 364.38 2.47 -62.16 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: -0.39 Total: 34.60 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 6.55 Total: 10.25 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -5.29 Total: -115.65 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -0.09 Total: -35.19 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.67 Total: 43.84 kcal Total: -64.63 2.47 -62.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128425445.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.666 kcal (2) G-P(sol) polarization free energy of solvation -64.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds