Wall clock time and date at job start Tue Mar 31 2020 12:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46914 * 2 1 4 4 H 1.08993 * 109.47295 * 305.55300 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55318 * 3 2 1 6 6 H 1.07996 * 120.00449 * 245.60469 * 5 3 2 7 7 C 1.37879 * 120.00154 * 65.60852 * 5 3 2 8 8 N 1.31514 * 120.00263 * 196.28627 * 7 5 3 9 9 Si 1.86803 * 120.00061 * 16.28010 * 7 5 3 10 10 H 1.48499 * 109.47518 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.47391 * 300.00728 * 9 7 5 12 12 H 1.48507 * 109.46974 * 60.00396 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55540 * 3 2 1 14 14 C 1.34771 * 119.99789 * 274.99899 * 13 3 2 15 15 O 1.21360 * 120.00402 * 0.02562 * 14 13 3 16 16 C 1.49307 * 119.99962 * 179.97438 * 14 13 3 17 17 O 1.21397 * 119.99881 * 0.02562 * 16 14 13 18 18 N 1.34774 * 120.00374 * 179.97438 * 16 14 13 19 19 C 1.39201 * 120.00124 * 180.02562 * 18 16 14 20 20 C 1.36209 * 126.27464 * 359.69333 * 19 18 16 21 21 C 1.39691 * 107.85948 * 179.84640 * 20 19 18 22 22 N 1.30847 * 108.45795 * 0.41726 * 21 20 19 23 23 N 1.35857 * 126.26704 * 180.02562 * 19 18 16 24 24 C 1.46498 * 126.10061 * 359.97438 * 23 19 18 25 25 C 1.52997 * 109.47084 * 90.00357 * 24 23 19 26 26 C 1.53000 * 109.47138 * 64.99974 * 25 24 23 27 27 C 1.53006 * 109.46987 * 184.99871 * 25 24 23 28 28 H 1.09005 * 109.47083 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47210 * 299.99485 * 1 2 3 30 30 H 1.08998 * 109.47621 * 60.00436 * 1 2 3 31 31 H 1.09008 * 109.47032 * 240.00580 * 2 1 3 32 32 H 1.09000 * 109.47548 * 120.00343 * 2 1 3 33 33 H 0.96993 * 119.99752 * 354.83016 * 8 7 5 34 34 H 0.97002 * 119.99591 * 94.99593 * 13 3 2 35 35 H 0.97010 * 119.99795 * 0.02562 * 18 16 14 36 36 H 1.07997 * 126.06907 * 359.97438 * 20 19 18 37 37 H 1.08001 * 125.77228 * 180.16364 * 21 20 19 38 38 H 1.09000 * 109.46731 * 210.00209 * 24 23 19 39 39 H 1.08997 * 109.47336 * 330.00097 * 24 23 19 40 40 H 1.09004 * 109.46948 * 304.99968 * 25 24 23 41 41 H 1.08996 * 109.46986 * 299.99794 * 26 25 24 42 42 H 1.08992 * 109.47439 * 59.99899 * 26 25 24 43 43 H 1.08996 * 109.47019 * 180.02562 * 26 25 24 44 44 H 1.08996 * 109.46979 * 60.00007 * 27 25 24 45 45 H 1.08996 * 109.46868 * 179.97438 * 27 25 24 46 46 H 1.08992 * 109.47033 * 299.99760 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4448 -0.1375 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2987 8 7 5.4072 0.6862 -1.3142 9 14 3.1039 0.7978 -2.8499 10 1 3.9632 0.2936 -3.9511 11 1 2.0023 -0.1664 -2.6011 12 1 2.5326 2.1146 -3.2306 13 7 1.6638 2.0934 1.2574 14 6 0.4476 2.6599 1.3854 15 8 -0.3362 2.6304 0.4593 16 6 0.0640 3.3228 2.6671 17 8 0.8478 3.3519 3.5937 18 7 -1.1520 3.8897 2.7951 19 6 -1.5093 4.5082 3.9898 20 6 -0.7371 4.6095 5.1073 21 6 -1.4695 5.3046 6.0726 22 7 -2.6390 5.6050 5.5684 23 7 -2.6946 5.1159 4.2570 24 6 -3.8284 5.2387 3.3374 25 6 -4.7538 4.0319 3.5048 26 6 -5.3662 4.0494 4.9068 27 6 -5.8698 4.0962 2.4600 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 5.9548 0.8552 -0.5317 34 1 2.2901 2.1166 1.9978 35 1 -1.7782 3.8668 2.0545 36 1 0.2644 4.2230 5.2253 37 1 -1.1296 5.5489 7.0682 38 1 -4.3792 6.1526 3.5597 39 1 -3.4617 5.2759 2.3116 40 1 -4.1819 3.1139 3.3695 41 1 -4.5712 4.0036 5.6510 42 1 -5.9381 4.9674 5.0421 43 1 -6.0252 3.1895 5.0262 44 1 -5.4335 4.0838 1.4612 45 1 -6.5288 3.2363 2.5789 46 1 -6.4416 5.0142 2.5953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128425671.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:02 Heat of formation + Delta-G solvation = 3.044345 kcal Electronic energy + Delta-G solvation = -27725.011270 eV Core-core repulsion = 23844.634351 eV Total energy + Delta-G solvation = -3880.376919 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.74071 -40.30515 -38.49744 -36.80150 -35.83120 -34.94985 -32.56321 -32.00203 -31.58910 -29.37337 -27.58959 -27.51514 -26.56406 -24.95499 -22.52072 -21.93702 -21.46082 -20.62182 -19.97856 -19.75127 -18.83285 -17.79922 -17.02065 -16.52252 -16.18564 -15.84981 -15.56786 -15.23001 -14.72209 -14.41656 -14.20979 -13.98811 -13.63086 -13.49918 -13.41188 -12.93324 -12.80392 -12.61167 -12.60547 -12.43528 -12.37624 -11.89899 -11.68253 -11.47382 -11.39763 -11.25798 -11.12176 -11.05458 -10.84498 -10.68778 -10.55551 -10.01364 -9.71027 -9.38195 -9.17912 -9.12024 -8.46237 -8.41015 -8.24702 -6.67882 -4.32864 1.18905 1.80463 2.00564 2.66094 2.81187 3.29690 3.36461 3.43706 3.50957 3.75734 4.15239 4.32073 4.32869 4.55513 4.69877 4.76005 4.93927 5.01423 5.06585 5.20675 5.26345 5.29799 5.41999 5.48231 5.54835 5.68998 5.75292 5.85094 5.90894 5.94454 5.97541 5.97934 6.09089 6.47944 6.59650 6.63299 6.70036 6.72009 6.82730 6.89336 7.07807 7.20030 7.40856 7.58151 7.64257 8.08041 8.18177 8.36998 8.69472 9.36943 10.73555 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019384 B = 0.003054 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.121405 B = 9166.896713 C =10121.482023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.142 4.142 3 C 0.246 3.754 4 H 0.047 0.953 5 C -0.622 4.622 6 H 0.065 0.935 7 C 0.041 3.959 8 N -0.893 5.893 9 Si 1.039 2.961 10 H -0.282 1.282 11 H -0.268 1.268 12 H -0.279 1.279 13 N -0.656 5.656 14 C 0.500 3.500 15 O -0.530 6.530 16 C 0.514 3.486 17 O -0.485 6.485 18 N -0.628 5.628 19 C 0.306 3.694 20 C -0.278 4.278 21 C 0.057 3.943 22 N -0.287 5.287 23 N -0.384 5.384 24 C 0.133 3.867 25 C -0.115 4.115 26 C -0.144 4.144 27 C -0.146 4.146 28 H 0.035 0.965 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.271 0.729 34 H 0.407 0.593 35 H 0.421 0.579 36 H 0.173 0.827 37 H 0.186 0.814 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.539 6.856 9.606 22.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C 0.143 3.857 4 H 0.065 0.935 5 C -0.659 4.659 6 H 0.083 0.917 7 C -0.166 4.166 8 N -0.526 5.526 9 Si 0.867 3.133 10 H -0.207 1.207 11 H -0.194 1.194 12 H -0.205 1.205 13 N -0.305 5.305 14 C 0.279 3.721 15 O -0.409 6.409 16 C 0.296 3.704 17 O -0.356 6.356 18 N -0.277 5.277 19 C 0.087 3.913 20 C -0.310 4.310 21 C -0.129 4.129 22 N -0.109 5.109 23 N -0.172 5.172 24 C 0.011 3.989 25 C -0.135 4.135 26 C -0.201 4.201 27 C -0.204 4.204 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.243 0.757 35 H 0.259 0.741 36 H 0.190 0.810 37 H 0.202 0.798 38 H 0.118 0.882 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.563 6.840 8.084 23.130 hybrid contribution 0.700 0.200 1.486 1.655 sum -19.864 7.040 9.570 23.146 Atomic orbital electron populations 1.21903 0.97369 0.99327 1.01679 1.22401 0.93805 0.99333 1.02495 1.19303 0.96467 0.88786 0.81112 0.93491 1.22071 0.89200 1.50141 1.04527 0.91661 1.25693 0.97564 0.92258 1.01112 1.70863 1.07013 1.40287 1.34416 0.84128 0.75555 0.77716 0.75921 1.20744 1.19430 1.20523 1.46214 1.13163 1.52220 1.18919 1.19430 0.84563 0.81431 0.86707 1.90744 1.50623 1.59543 1.39970 1.20832 0.80831 0.78945 0.89793 1.90702 1.49496 1.55221 1.40177 1.42523 1.17520 1.54099 1.13564 1.18137 0.88393 0.96468 0.88343 1.21703 1.04177 1.13095 0.91992 1.23752 0.91320 0.97509 1.00277 1.77414 1.21006 1.22683 0.89823 1.48802 1.10685 1.45940 1.11811 1.21848 0.85443 1.00554 0.91011 1.21572 0.96775 0.97912 0.97233 1.21791 1.00964 1.01678 0.95665 1.21789 0.97864 1.02558 0.98179 0.94633 0.93702 0.92794 0.90709 0.92617 0.91876 0.75717 0.74135 0.80970 0.79752 0.88175 0.89407 0.90728 0.91877 0.92443 0.92712 0.92085 0.91800 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.53 37.15 0.32 -2.36 16 2 C -0.14 -2.96 5.28 -26.73 -0.14 -3.10 16 3 C 0.25 5.51 1.82 -69.08 -0.13 5.39 16 4 H 0.05 1.12 6.26 -51.93 -0.32 0.79 16 5 C -0.62 -16.14 9.01 -34.44 -0.31 -16.45 16 6 H 0.07 1.80 7.96 -52.49 -0.42 1.38 16 7 C 0.04 1.11 5.32 -17.82 -0.09 1.02 16 8 N -0.89 -25.85 13.70 55.43 0.76 -25.09 16 9 Si 1.04 23.77 26.27 -169.99 -4.47 19.30 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.27 -5.64 5.67 56.52 0.32 -5.32 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 13 N -0.66 -12.80 5.02 -55.41 -0.28 -13.08 16 14 C 0.50 8.85 6.48 -11.65 -0.08 8.78 16 15 O -0.53 -9.88 13.61 5.49 0.07 -9.80 16 16 C 0.51 8.00 7.85 -11.65 -0.09 7.91 16 17 O -0.49 -8.19 13.60 5.46 0.07 -8.11 16 18 N -0.63 -8.14 5.40 -11.80 -0.06 -8.20 16 19 C 0.31 4.02 7.68 -152.85 -1.17 2.85 16 20 C -0.28 -3.77 9.65 -39.77 -0.38 -4.15 16 21 C 0.06 0.67 12.00 -17.43 -0.21 0.46 16 22 N -0.29 -3.54 11.64 30.59 0.36 -3.18 16 23 N -0.38 -4.42 3.24 -60.29 -0.20 -4.61 16 24 C 0.13 1.11 5.66 -4.04 -0.02 1.09 16 25 C -0.12 -0.89 3.13 -90.62 -0.28 -1.18 16 26 C -0.14 -1.19 9.05 37.16 0.34 -0.86 16 27 C -0.15 -0.87 9.19 37.16 0.34 -0.53 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.80 5.63 -51.93 -0.29 0.51 16 30 H 0.05 1.01 7.88 -51.93 -0.41 0.60 16 31 H 0.07 1.63 4.74 -51.92 -0.25 1.38 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.27 7.79 8.73 -40.82 -0.36 7.43 16 34 H 0.41 7.65 7.99 -40.82 -0.33 7.32 16 35 H 0.42 4.68 7.46 -40.82 -0.30 4.37 16 36 H 0.17 2.52 5.83 -52.49 -0.31 2.21 16 37 H 0.19 1.51 8.06 -52.49 -0.42 1.08 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.61 7.52 -51.93 -0.39 0.22 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.66 6.95 -51.93 -0.36 0.30 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 371.26 15.07 5.59 5.59 Total: -1.00 -29.82 371.26 -6.90 -36.72 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -6.84 Total: 11.61 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -1.92 Total: -1.15 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 0.58 Total: -54.17 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.15 Total: -17.92 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -4.47 Total: 19.30 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.82 -6.90 -36.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128425671.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.765 kcal (2) G-P(sol) polarization free energy of solvation -29.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds