Wall clock time and date at job start Tue Mar 31 2020 12:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46914 * 2 1 4 4 H 1.08993 * 109.47295 * 305.55300 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55318 * 3 2 1 6 6 H 1.07996 * 120.00449 * 245.60469 * 5 3 2 7 7 C 1.37879 * 120.00154 * 65.60852 * 5 3 2 8 8 N 1.31514 * 120.00263 * 196.28627 * 7 5 3 9 9 Si 1.86803 * 120.00061 * 16.28010 * 7 5 3 10 10 H 1.48499 * 109.47518 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.47391 * 300.00728 * 9 7 5 12 12 H 1.48507 * 109.46974 * 60.00396 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55540 * 3 2 1 14 14 C 1.34771 * 119.99789 * 274.99899 * 13 3 2 15 15 O 1.21360 * 120.00402 * 0.02562 * 14 13 3 16 16 C 1.49307 * 119.99962 * 179.97438 * 14 13 3 17 17 O 1.21397 * 119.99881 * 0.02562 * 16 14 13 18 18 N 1.34774 * 120.00374 * 179.97438 * 16 14 13 19 19 C 1.39201 * 120.00124 * 180.02562 * 18 16 14 20 20 C 1.36209 * 126.27464 * 359.69333 * 19 18 16 21 21 C 1.39691 * 107.85948 * 179.84640 * 20 19 18 22 22 N 1.30847 * 108.45795 * 0.41726 * 21 20 19 23 23 N 1.35857 * 126.26704 * 180.02562 * 19 18 16 24 24 C 1.46498 * 126.10061 * 359.97438 * 23 19 18 25 25 C 1.52997 * 109.47084 * 90.00357 * 24 23 19 26 26 C 1.53000 * 109.47138 * 64.99974 * 25 24 23 27 27 C 1.53006 * 109.46987 * 184.99871 * 25 24 23 28 28 H 1.09005 * 109.47083 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47210 * 299.99485 * 1 2 3 30 30 H 1.08998 * 109.47621 * 60.00436 * 1 2 3 31 31 H 1.09008 * 109.47032 * 240.00580 * 2 1 3 32 32 H 1.09000 * 109.47548 * 120.00343 * 2 1 3 33 33 H 0.96993 * 119.99752 * 354.83016 * 8 7 5 34 34 H 0.97002 * 119.99591 * 94.99593 * 13 3 2 35 35 H 0.97010 * 119.99795 * 0.02562 * 18 16 14 36 36 H 1.07997 * 126.06907 * 359.97438 * 20 19 18 37 37 H 1.08001 * 125.77228 * 180.16364 * 21 20 19 38 38 H 1.09000 * 109.46731 * 210.00209 * 24 23 19 39 39 H 1.08997 * 109.47336 * 330.00097 * 24 23 19 40 40 H 1.09004 * 109.46948 * 304.99968 * 25 24 23 41 41 H 1.08996 * 109.46986 * 299.99794 * 26 25 24 42 42 H 1.08992 * 109.47439 * 59.99899 * 26 25 24 43 43 H 1.08996 * 109.47019 * 180.02562 * 26 25 24 44 44 H 1.08996 * 109.46979 * 60.00007 * 27 25 24 45 45 H 1.08996 * 109.46868 * 179.97438 * 27 25 24 46 46 H 1.08992 * 109.47033 * 299.99760 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4448 -0.1375 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2987 8 7 5.4072 0.6862 -1.3142 9 14 3.1039 0.7978 -2.8499 10 1 3.9632 0.2936 -3.9511 11 1 2.0023 -0.1664 -2.6011 12 1 2.5326 2.1146 -3.2306 13 7 1.6638 2.0934 1.2574 14 6 0.4476 2.6599 1.3854 15 8 -0.3362 2.6304 0.4593 16 6 0.0640 3.3228 2.6671 17 8 0.8478 3.3519 3.5937 18 7 -1.1520 3.8897 2.7951 19 6 -1.5093 4.5082 3.9898 20 6 -0.7371 4.6095 5.1073 21 6 -1.4695 5.3046 6.0726 22 7 -2.6390 5.6050 5.5684 23 7 -2.6946 5.1159 4.2570 24 6 -3.8284 5.2387 3.3374 25 6 -4.7538 4.0319 3.5048 26 6 -5.3662 4.0494 4.9068 27 6 -5.8698 4.0962 2.4600 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 5.9548 0.8552 -0.5317 34 1 2.2901 2.1166 1.9978 35 1 -1.7782 3.8668 2.0545 36 1 0.2644 4.2230 5.2253 37 1 -1.1296 5.5489 7.0682 38 1 -4.3792 6.1526 3.5597 39 1 -3.4617 5.2759 2.3116 40 1 -4.1819 3.1139 3.3695 41 1 -4.5712 4.0036 5.6510 42 1 -5.9381 4.9674 5.0421 43 1 -6.0252 3.1895 5.0262 44 1 -5.4335 4.0838 1.4612 45 1 -6.5288 3.2363 2.5789 46 1 -6.4416 5.0142 2.5953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128425671.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:01 Heat of formation + Delta-G solvation = -16.494675 kcal Electronic energy + Delta-G solvation = -27725.858545 eV Core-core repulsion = 23844.634351 eV Total energy + Delta-G solvation = -3881.224194 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.78033 -41.58562 -39.87898 -37.49062 -37.36970 -36.21812 -34.49350 -33.21201 -32.81494 -30.43085 -29.32775 -28.10400 -27.29777 -26.33747 -24.27418 -23.11521 -22.38502 -21.71924 -21.33460 -21.00338 -20.21089 -19.29610 -18.33546 -17.90987 -17.43921 -16.97168 -16.63442 -16.38797 -15.92336 -15.45113 -15.39710 -15.13656 -15.05368 -14.56401 -14.54173 -14.44522 -14.27308 -14.04917 -13.68281 -13.61665 -13.18157 -12.95834 -12.82568 -12.67376 -12.49067 -12.36208 -12.30782 -12.27200 -11.94744 -11.79605 -11.77533 -11.67769 -11.40002 -11.12595 -10.77540 -10.49446 -10.06066 -10.00005 -9.28955 -8.82134 -6.47471 -0.05192 0.70402 0.93178 1.48088 1.53755 1.64341 1.72723 1.80051 2.11093 2.43810 2.50326 3.00730 3.29358 3.45121 3.69764 3.91415 4.02094 4.14083 4.29718 4.36169 4.37906 4.41465 4.48575 4.52320 4.60863 4.73914 4.76177 4.78950 4.91861 4.96511 5.00624 5.09001 5.13098 5.14653 5.22687 5.31848 5.34701 5.38147 5.50667 5.59787 5.65875 5.74895 5.88263 5.98330 6.34565 6.47344 6.58441 6.67304 6.91527 7.30353 8.58298 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019384 B = 0.003054 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.121405 B = 9166.896713 C =10121.482023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.140 4.140 3 C 0.251 3.749 4 H 0.041 0.959 5 C -0.620 4.620 6 H 0.036 0.964 7 C -0.005 4.005 8 N -0.927 5.927 9 Si 1.071 2.929 10 H -0.286 1.286 11 H -0.236 1.236 12 H -0.268 1.268 13 N -0.666 5.666 14 C 0.507 3.493 15 O -0.534 6.534 16 C 0.522 3.478 17 O -0.501 6.501 18 N -0.611 5.611 19 C 0.293 3.707 20 C -0.296 4.296 21 C 0.059 3.941 22 N -0.296 5.296 23 N -0.377 5.377 24 C 0.123 3.877 25 C -0.110 4.110 26 C -0.141 4.141 27 C -0.142 4.142 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.257 0.743 34 H 0.409 0.591 35 H 0.431 0.569 36 H 0.159 0.841 37 H 0.215 0.785 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.060 0.940 41 H 0.039 0.961 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.621 7.271 9.365 25.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.179 4.179 3 C 0.148 3.852 4 H 0.058 0.942 5 C -0.658 4.658 6 H 0.055 0.945 7 C -0.206 4.206 8 N -0.561 5.561 9 Si 0.893 3.107 10 H -0.212 1.212 11 H -0.160 1.160 12 H -0.193 1.193 13 N -0.315 5.315 14 C 0.286 3.714 15 O -0.413 6.413 16 C 0.303 3.697 17 O -0.373 6.373 18 N -0.260 5.260 19 C 0.073 3.927 20 C -0.327 4.327 21 C -0.126 4.126 22 N -0.118 5.118 23 N -0.165 5.165 24 C 0.003 3.997 25 C -0.130 4.130 26 C -0.198 4.198 27 C -0.199 4.199 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.245 0.755 35 H 0.270 0.730 36 H 0.177 0.823 37 H 0.231 0.769 38 H 0.131 0.869 39 H 0.122 0.878 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.712 7.277 7.866 26.021 hybrid contribution 1.618 0.153 1.679 2.337 sum -22.094 7.430 9.545 25.188 Atomic orbital electron populations 1.21809 0.95019 1.00959 1.01637 1.22300 0.95832 0.97682 1.02038 1.19028 0.93878 0.90145 0.82180 0.94169 1.22261 0.91342 1.48732 1.03417 0.94538 1.26957 0.97687 0.91788 1.04128 1.70979 1.08169 1.42987 1.33996 0.83753 0.75307 0.79068 0.72610 1.21181 1.16031 1.19285 1.46028 1.14219 1.53105 1.18129 1.19601 0.83680 0.80713 0.87382 1.90735 1.50601 1.59479 1.40480 1.20246 0.81551 0.79230 0.88633 1.90720 1.50229 1.56034 1.40301 1.42235 1.16666 1.53136 1.13989 1.18149 0.89284 0.97151 0.88136 1.21749 1.04069 1.13887 0.93011 1.24192 0.90647 0.96622 1.01189 1.77394 1.21282 1.22840 0.90248 1.49030 1.10711 1.44970 1.11837 1.22199 0.84842 1.01405 0.91232 1.21523 0.97031 0.96917 0.97491 1.21757 1.00333 1.02331 0.95376 1.21763 0.97239 1.03245 0.97703 0.92216 0.93593 0.92920 0.91491 0.92825 0.93349 0.75540 0.72967 0.82326 0.76865 0.86941 0.87800 0.92110 0.94194 0.91714 0.92174 0.91490 0.91606 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.64 8.53 71.98 0.61 -4.03 16 2 C -0.14 -5.61 5.28 30.59 0.16 -5.45 16 3 C 0.25 11.09 1.82 44.25 0.08 11.17 16 4 H 0.04 1.86 6.26 -2.39 -0.01 1.84 16 5 C -0.62 -32.72 9.01 25.60 0.23 -32.49 16 6 H 0.04 2.09 7.96 -2.91 -0.02 2.06 16 7 C 0.00 -0.27 5.32 84.66 0.45 0.18 16 8 N -0.93 -55.06 13.70 21.45 0.29 -54.76 16 9 Si 1.07 47.09 26.27 68.60 1.80 48.89 16 10 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.24 -9.12 5.67 99.48 0.56 -8.56 16 12 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 13 N -0.67 -25.69 5.02 -447.59 -2.25 -27.94 16 14 C 0.51 17.31 6.48 87.23 0.57 17.88 16 15 O -0.53 -18.82 13.61 -3.28 -0.04 -18.87 16 16 C 0.52 15.74 7.85 87.23 0.68 16.42 16 17 O -0.50 -16.75 13.60 -3.39 -0.05 -16.80 16 18 N -0.61 -14.92 5.40 -309.58 -1.67 -16.59 16 19 C 0.29 7.32 7.68 131.25 1.01 8.33 16 20 C -0.30 -7.78 9.65 22.15 0.21 -7.57 16 21 C 0.06 1.29 12.00 85.19 1.02 2.31 16 22 N -0.30 -6.80 11.64 -57.14 -0.66 -7.47 16 23 N -0.38 -8.03 3.24 -344.67 -1.12 -9.15 16 24 C 0.12 1.77 5.66 86.38 0.49 2.26 16 25 C -0.11 -1.47 3.13 -10.79 -0.03 -1.51 16 26 C -0.14 -2.10 9.05 71.98 0.65 -1.45 16 27 C -0.14 -1.30 9.19 71.98 0.66 -0.64 16 28 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.05 1.53 5.63 -2.39 -0.01 1.52 16 30 H 0.05 1.80 7.88 -2.39 -0.02 1.78 16 31 H 0.07 2.78 4.74 -2.38 -0.01 2.77 16 32 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.26 15.45 8.73 -92.71 -0.81 14.64 16 34 H 0.41 15.53 7.99 -92.71 -0.74 14.79 16 35 H 0.43 8.66 7.46 -92.70 -0.69 7.97 16 36 H 0.16 4.64 5.83 -2.91 -0.02 4.62 16 37 H 0.21 3.07 8.06 -2.91 -0.02 3.05 16 38 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.10 1.15 7.52 -2.39 -0.02 1.14 16 40 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.04 0.78 6.95 -2.39 -0.02 0.77 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -64.48 371.26 2.51 -61.97 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: -0.60 Total: 35.30 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 6.80 Total: 5.42 kcal Atomic # 7 Polarization: -110.50 SS G_CDS: -5.41 Total: -115.91 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.09 Total: -35.67 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.80 Total: 48.89 kcal Total: -64.48 2.51 -61.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128425671.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.480 kcal (2) G-P(sol) polarization free energy of solvation -64.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds