Wall clock time and date at job start Tue Mar 31 2020 12:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47102 * 2 1 4 4 H 1.08993 * 109.46955 * 55.00306 * 3 2 1 5 5 C 1.50698 * 109.47184 * 175.00464 * 3 2 1 6 6 H 1.07993 * 120.00472 * 119.99561 * 5 3 2 7 7 C 1.37884 * 119.99909 * 299.99693 * 5 3 2 8 8 N 1.31512 * 120.00357 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 119.99802 * 359.97438 * 7 5 3 10 10 H 1.48505 * 109.46841 * 89.99881 * 9 7 5 11 11 H 1.48494 * 109.47129 * 210.00104 * 9 7 5 12 12 H 1.48501 * 109.47268 * 330.00196 * 9 7 5 13 13 N 1.46500 * 109.46998 * 295.00080 * 3 2 1 14 14 C 1.34773 * 119.99910 * 84.99768 * 13 3 2 15 15 O 1.21355 * 120.00412 * 0.02562 * 14 13 3 16 16 C 1.49335 * 119.99910 * 180.02562 * 14 13 3 17 17 O 1.21401 * 119.99626 * 0.02562 * 16 14 13 18 18 N 1.34773 * 119.99910 * 180.02562 * 16 14 13 19 19 C 1.40480 * 120.00008 * 179.97438 * 18 16 14 20 20 C 1.40339 * 126.11546 * 0.03032 * 19 18 16 21 21 N 1.30820 * 108.21050 * 179.97438 * 20 19 18 22 22 N 1.40052 * 108.36687 * 359.97438 * 21 20 19 23 23 C 1.46504 * 125.99569 * 179.97438 * 22 21 20 24 24 C 1.52994 * 109.47266 * 255.02911 * 23 22 21 25 25 C 1.52998 * 109.46753 * 15.02889 * 23 22 21 26 26 C 1.53001 * 109.46835 * 135.02831 * 23 22 21 27 27 C 1.35229 * 108.00805 * 359.74013 * 22 21 20 28 28 H 1.08997 * 109.47474 * 60.00037 * 1 2 3 29 29 H 1.09002 * 109.46922 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46822 * 299.99923 * 1 2 3 31 31 H 1.09000 * 109.47145 * 239.99763 * 2 1 3 32 32 H 1.09007 * 109.47521 * 119.99769 * 2 1 3 33 33 H 0.97001 * 120.00117 * 180.02562 * 8 7 5 34 34 H 0.97003 * 119.99995 * 265.00643 * 13 3 2 35 35 H 0.97003 * 120.00095 * 0.02562 * 18 16 14 36 36 H 1.08004 * 125.89395 * 359.97438 * 20 19 18 37 37 H 1.09004 * 109.47471 * 60.00052 * 24 23 22 38 38 H 1.08996 * 109.47190 * 179.97438 * 24 23 22 39 39 H 1.09002 * 109.47405 * 299.99901 * 24 23 22 40 40 H 1.09004 * 109.47386 * 60.00005 * 25 23 22 41 41 H 1.09004 * 109.47169 * 179.97438 * 25 23 22 42 42 H 1.08997 * 109.47276 * 299.99840 * 25 23 22 43 43 H 1.08996 * 109.46864 * 60.00167 * 26 23 22 44 44 H 1.09004 * 109.46742 * 180.02562 * 26 23 22 45 45 H 1.08996 * 109.46945 * 299.99811 * 26 23 22 46 46 H 1.08004 * 126.17544 * 180.26957 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1237 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 5.4540 0.8805 1.3362 9 14 3.0964 0.1102 2.5707 10 1 2.8744 -1.3259 2.2646 11 1 3.7942 0.2362 3.8754 12 1 1.7882 0.8095 2.6396 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3398 2.6326 -0.4335 16 6 0.0398 3.3315 -2.6432 17 8 0.8148 3.3628 -3.5771 18 7 -1.1774 3.8988 -2.7581 19 6 -1.5490 4.5268 -3.9585 20 6 -0.7591 4.6377 -5.1131 21 7 -1.4466 5.2856 -6.0181 22 7 -2.6961 5.6097 -5.4748 23 6 -3.7693 6.3368 -6.1573 24 6 -3.8383 7.7674 -5.6194 25 6 -3.4867 6.3703 -7.6606 26 6 -5.1036 5.6320 -5.9047 27 6 -2.7401 5.1290 -4.2116 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 5.8771 0.4820 2.1128 34 1 2.2718 2.1231 -1.9978 35 1 -1.7965 3.8741 -2.0117 36 1 0.2434 4.2543 -5.2337 37 1 -2.8877 8.2696 -5.7993 38 1 -4.6365 8.3085 -6.1274 39 1 -4.0396 7.7436 -4.5484 40 1 -3.4376 5.3511 -8.0439 41 1 -4.2854 6.9110 -8.1685 42 1 -2.5362 6.8724 -7.8405 43 1 -5.3048 5.6082 -4.8337 44 1 -5.9020 6.1728 -6.4129 45 1 -5.0544 4.6129 -6.2880 46 1 -3.5711 5.2117 -3.5267 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128425907.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:11 Heat of formation + Delta-G solvation = 12.785742 kcal Electronic energy + Delta-G solvation = -27247.298774 eV Core-core repulsion = 23367.344274 eV Total energy + Delta-G solvation = -3879.954500 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.66557 -40.22018 -38.40134 -37.04657 -35.67148 -34.53414 -32.40822 -31.56124 -30.78951 -29.22665 -27.91852 -27.80789 -27.61142 -24.74436 -22.89685 -22.67556 -21.31377 -20.57775 -19.88083 -19.34120 -18.31556 -17.38275 -16.63790 -16.25715 -15.91898 -15.56909 -15.41566 -15.28127 -14.72391 -14.45836 -14.27929 -14.12265 -13.74729 -13.47202 -13.07724 -13.02349 -12.77799 -12.69205 -12.59837 -12.40885 -12.23642 -12.01082 -11.86847 -11.70098 -11.62229 -11.25853 -11.16138 -10.89135 -10.86001 -10.80645 -10.68667 -9.98358 -9.59603 -9.51831 -9.30434 -9.12578 -8.80963 -8.26355 -7.83956 -6.23485 -4.27215 1.43184 1.91782 2.09858 2.75713 2.81131 3.20680 3.32983 3.35872 3.67463 4.00853 4.11402 4.27860 4.28774 4.39478 4.54119 4.83659 4.96925 4.98502 5.05773 5.08758 5.16790 5.22676 5.26112 5.34595 5.43587 5.49337 5.53078 5.70173 5.84767 5.88054 5.95364 6.04981 6.08358 6.55503 6.61043 6.71483 6.73133 6.83100 6.84296 7.01518 7.16973 7.22787 7.39700 7.57650 7.84256 8.09974 8.39954 8.55797 8.77970 9.35009 10.88367 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.032450 B = 0.002421 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.664873 B =11563.887680 C =11951.413799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.241 3.759 4 H 0.054 0.946 5 C -0.538 4.538 6 H 0.084 0.916 7 C 0.080 3.920 8 N -0.888 5.888 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.293 1.293 12 H -0.260 1.260 13 N -0.660 5.660 14 C 0.500 3.500 15 O -0.533 6.533 16 C 0.508 3.492 17 O -0.512 6.512 18 N -0.619 5.619 19 C 0.000 4.000 20 C 0.052 3.948 21 N -0.284 5.284 22 N -0.359 5.359 23 C 0.185 3.815 24 C -0.160 4.160 25 C -0.144 4.144 26 C -0.160 4.160 27 C 0.022 3.978 28 H 0.049 0.951 29 H 0.035 0.965 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.268 0.732 34 H 0.409 0.591 35 H 0.421 0.579 36 H 0.207 0.793 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.839 10.087 -13.535 27.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.138 3.862 4 H 0.072 0.928 5 C -0.576 4.576 6 H 0.102 0.898 7 C -0.124 4.124 8 N -0.525 5.525 9 Si 0.712 3.288 10 H -0.201 1.201 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.309 5.309 14 C 0.278 3.722 15 O -0.412 6.412 16 C 0.291 3.709 17 O -0.386 6.386 18 N -0.266 5.266 19 C -0.104 4.104 20 C -0.135 4.135 21 N -0.105 5.105 22 N -0.145 5.145 23 C 0.102 3.898 24 C -0.218 4.218 25 C -0.202 4.202 26 C -0.218 4.218 27 C -0.126 4.126 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.244 0.756 35 H 0.258 0.742 36 H 0.223 0.777 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.086 0.914 46 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -21.705 10.531 -14.624 28.211 hybrid contribution -0.431 -0.857 1.761 2.005 sum -22.136 9.674 -12.863 27.369 Atomic orbital electron populations 1.21890 0.96912 0.99382 1.02067 1.22316 0.94387 0.99616 1.01600 1.19346 0.96176 0.88684 0.81980 0.92795 1.21016 0.88248 1.40225 1.08141 0.89844 1.24825 0.94893 0.95078 0.97607 1.69861 1.08677 1.44137 1.29798 0.86915 0.80931 0.80002 0.80963 1.20138 1.22068 1.18415 1.46082 1.13710 1.52532 1.18619 1.19608 0.84208 0.81139 0.87196 1.90731 1.51310 1.59568 1.39596 1.20649 0.81560 0.79404 0.89324 1.90627 1.50776 1.57249 1.39929 1.42456 1.16566 1.53662 1.13888 1.17766 0.95380 1.07774 0.89529 1.24568 1.01301 0.98356 0.89313 1.77363 0.91353 1.19352 1.22427 1.48493 1.12387 1.43987 1.09588 1.20687 0.84149 0.91159 0.93772 1.22273 1.03381 0.94295 1.01874 1.21915 1.03026 1.03494 0.91741 1.22254 0.95013 1.01530 1.03030 1.21657 0.98890 1.02589 0.89489 0.93213 0.94637 0.92688 0.91903 0.92370 0.92172 0.75577 0.74239 0.77680 0.91489 0.90429 0.91754 0.91552 0.90975 0.90868 0.91551 0.90113 0.91411 0.80905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.51 37.16 0.32 -2.44 16 2 C -0.14 -3.02 5.11 -26.73 -0.14 -3.16 16 3 C 0.24 5.55 1.83 -69.08 -0.13 5.43 16 4 H 0.05 1.34 6.63 -51.93 -0.34 0.99 16 5 C -0.54 -14.36 9.31 -34.44 -0.32 -14.68 16 6 H 0.08 2.37 7.98 -52.49 -0.42 1.95 16 7 C 0.08 2.21 5.45 -17.82 -0.10 2.12 16 8 N -0.89 -26.05 13.96 55.43 0.77 -25.28 16 9 Si 0.88 21.13 24.41 -169.99 -4.15 16.98 16 10 H -0.27 -6.37 6.83 56.52 0.39 -5.99 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.26 -6.06 6.53 56.52 0.37 -5.70 16 13 N -0.66 -13.21 5.01 -55.40 -0.28 -13.49 16 14 C 0.50 9.15 6.45 -11.64 -0.08 9.07 16 15 O -0.53 -10.37 13.61 5.49 0.07 -10.29 16 16 C 0.51 8.18 7.86 -11.64 -0.09 8.09 16 17 O -0.51 -8.89 13.63 5.45 0.07 -8.81 16 18 N -0.62 -8.14 5.45 -10.48 -0.06 -8.20 16 19 C 0.00 0.00 6.90 -83.96 -0.58 -0.58 16 20 C 0.05 0.73 10.84 -17.19 -0.19 0.54 16 21 N -0.28 -3.75 11.64 30.72 0.36 -3.40 16 22 N -0.36 -3.71 3.44 -48.45 -0.17 -3.87 16 23 C 0.19 1.30 1.24 -131.82 -0.16 1.13 16 24 C -0.16 -0.92 8.73 37.15 0.32 -0.60 16 25 C -0.14 -0.98 8.09 37.16 0.30 -0.68 16 26 C -0.16 -0.80 8.29 37.16 0.31 -0.49 16 27 C 0.02 0.22 10.64 -16.91 -0.18 0.04 16 28 H 0.05 0.92 5.65 -51.93 -0.29 0.63 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 1.08 7.85 -51.93 -0.41 0.67 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.06 1.31 3.22 -51.93 -0.17 1.14 16 33 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.41 7.84 8.01 -40.82 -0.33 7.51 16 35 H 0.42 4.72 8.29 -40.82 -0.34 4.38 16 36 H 0.21 3.09 5.92 -52.48 -0.31 2.78 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.60 8.04 -51.93 -0.42 0.18 16 43 H 0.07 0.29 7.36 -51.93 -0.38 -0.09 16 44 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.17 1.14 7.55 -52.48 -0.40 0.74 16 LS Contribution 368.96 15.07 5.56 5.56 Total: -1.00 -31.39 368.96 -5.31 -36.70 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -6.79 Total: 10.30 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -0.71 Total: 3.79 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.63 Total: -54.23 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.15 Total: -19.10 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.15 Total: 16.98 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.39 -5.31 -36.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128425907.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.485 kcal (2) G-P(sol) polarization free energy of solvation -31.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds