Wall clock time and date at job start Tue Mar 31 2020 12:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47102 * 2 1 4 4 H 1.08993 * 109.46955 * 55.00306 * 3 2 1 5 5 C 1.50698 * 109.47184 * 175.00464 * 3 2 1 6 6 H 1.07993 * 120.00472 * 119.99561 * 5 3 2 7 7 C 1.37884 * 119.99909 * 299.99693 * 5 3 2 8 8 N 1.31512 * 120.00357 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 119.99802 * 359.97438 * 7 5 3 10 10 H 1.48505 * 109.46841 * 89.99881 * 9 7 5 11 11 H 1.48494 * 109.47129 * 210.00104 * 9 7 5 12 12 H 1.48501 * 109.47268 * 330.00196 * 9 7 5 13 13 N 1.46500 * 109.46998 * 295.00080 * 3 2 1 14 14 C 1.34773 * 119.99910 * 84.99768 * 13 3 2 15 15 O 1.21355 * 120.00412 * 0.02562 * 14 13 3 16 16 C 1.49335 * 119.99910 * 180.02562 * 14 13 3 17 17 O 1.21401 * 119.99626 * 0.02562 * 16 14 13 18 18 N 1.34773 * 119.99910 * 180.02562 * 16 14 13 19 19 C 1.40480 * 120.00008 * 179.97438 * 18 16 14 20 20 C 1.40339 * 126.11546 * 0.03032 * 19 18 16 21 21 N 1.30820 * 108.21050 * 179.97438 * 20 19 18 22 22 N 1.40052 * 108.36687 * 359.97438 * 21 20 19 23 23 C 1.46504 * 125.99569 * 179.97438 * 22 21 20 24 24 C 1.52994 * 109.47266 * 255.02911 * 23 22 21 25 25 C 1.52998 * 109.46753 * 15.02889 * 23 22 21 26 26 C 1.53001 * 109.46835 * 135.02831 * 23 22 21 27 27 C 1.35229 * 108.00805 * 359.74013 * 22 21 20 28 28 H 1.08997 * 109.47474 * 60.00037 * 1 2 3 29 29 H 1.09002 * 109.46922 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46822 * 299.99923 * 1 2 3 31 31 H 1.09000 * 109.47145 * 239.99763 * 2 1 3 32 32 H 1.09007 * 109.47521 * 119.99769 * 2 1 3 33 33 H 0.97001 * 120.00117 * 180.02562 * 8 7 5 34 34 H 0.97003 * 119.99995 * 265.00643 * 13 3 2 35 35 H 0.97003 * 120.00095 * 0.02562 * 18 16 14 36 36 H 1.08004 * 125.89395 * 359.97438 * 20 19 18 37 37 H 1.09004 * 109.47471 * 60.00052 * 24 23 22 38 38 H 1.08996 * 109.47190 * 179.97438 * 24 23 22 39 39 H 1.09002 * 109.47405 * 299.99901 * 24 23 22 40 40 H 1.09004 * 109.47386 * 60.00005 * 25 23 22 41 41 H 1.09004 * 109.47169 * 179.97438 * 25 23 22 42 42 H 1.08997 * 109.47276 * 299.99840 * 25 23 22 43 43 H 1.08996 * 109.46864 * 60.00167 * 26 23 22 44 44 H 1.09004 * 109.46742 * 180.02562 * 26 23 22 45 45 H 1.08996 * 109.46945 * 299.99811 * 26 23 22 46 46 H 1.08004 * 126.17544 * 180.26957 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1237 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 5.4540 0.8805 1.3362 9 14 3.0964 0.1102 2.5707 10 1 2.8744 -1.3259 2.2646 11 1 3.7942 0.2362 3.8754 12 1 1.7882 0.8095 2.6396 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3398 2.6326 -0.4335 16 6 0.0398 3.3315 -2.6432 17 8 0.8148 3.3628 -3.5771 18 7 -1.1774 3.8988 -2.7581 19 6 -1.5490 4.5268 -3.9585 20 6 -0.7591 4.6377 -5.1131 21 7 -1.4466 5.2856 -6.0181 22 7 -2.6961 5.6097 -5.4748 23 6 -3.7693 6.3368 -6.1573 24 6 -3.8383 7.7674 -5.6194 25 6 -3.4867 6.3703 -7.6606 26 6 -5.1036 5.6320 -5.9047 27 6 -2.7401 5.1290 -4.2116 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 5.8771 0.4820 2.1128 34 1 2.2718 2.1231 -1.9978 35 1 -1.7965 3.8741 -2.0117 36 1 0.2434 4.2543 -5.2337 37 1 -2.8877 8.2696 -5.7993 38 1 -4.6365 8.3085 -6.1274 39 1 -4.0396 7.7436 -4.5484 40 1 -3.4376 5.3511 -8.0439 41 1 -4.2854 6.9110 -8.1685 42 1 -2.5362 6.8724 -7.8405 43 1 -5.3048 5.6082 -4.8337 44 1 -5.9020 6.1728 -6.4129 45 1 -5.0544 4.6129 -6.2880 46 1 -3.5711 5.2117 -3.5267 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128425907.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:10 Heat of formation + Delta-G solvation = -10.470337 kcal Electronic energy + Delta-G solvation = -27248.307233 eV Core-core repulsion = 23367.344274 eV Total energy + Delta-G solvation = -3880.962959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.61943 -41.54936 -39.76828 -37.74689 -37.31745 -35.71924 -34.38416 -33.21534 -31.66041 -30.19444 -29.53793 -28.32089 -28.24053 -26.15311 -24.44816 -23.78136 -22.66717 -21.60192 -21.38762 -20.52274 -19.60014 -18.52199 -18.15403 -17.60030 -17.32418 -16.93369 -16.59557 -16.30988 -15.97070 -15.56130 -15.49496 -15.06967 -14.91092 -14.80892 -14.57624 -14.07299 -13.91514 -13.76475 -13.65505 -13.21412 -13.19518 -13.11449 -12.97136 -12.81796 -12.70934 -12.54234 -12.33669 -12.32592 -12.20546 -11.84746 -11.83825 -11.62970 -11.35679 -11.27273 -10.87027 -10.57313 -10.39889 -9.95013 -8.82046 -8.36881 -6.44726 0.23161 0.90246 1.18544 1.30925 1.38244 1.47982 1.62047 1.71092 2.27615 2.33701 2.78331 2.98212 3.45891 3.50248 3.79344 3.83775 3.91005 4.04970 4.23110 4.32156 4.42962 4.43798 4.47805 4.64273 4.68165 4.74295 4.78880 4.79372 4.85866 4.87293 4.96764 5.01470 5.10305 5.12794 5.19340 5.27395 5.30273 5.31324 5.49055 5.51864 5.68989 5.94415 6.07024 6.17988 6.52792 6.58027 6.67889 6.84906 7.03245 7.23379 8.78478 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.032450 B = 0.002421 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.664873 B =11563.887680 C =11951.413799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.141 4.141 3 C 0.249 3.751 4 H 0.040 0.960 5 C -0.541 4.541 6 H 0.051 0.949 7 C 0.028 3.972 8 N -0.934 5.934 9 Si 0.941 3.059 10 H -0.259 1.259 11 H -0.294 1.294 12 H -0.249 1.249 13 N -0.669 5.669 14 C 0.505 3.495 15 O -0.541 6.541 16 C 0.511 3.489 17 O -0.531 6.531 18 N -0.597 5.597 19 C -0.032 4.032 20 C 0.031 3.969 21 N -0.307 5.307 22 N -0.350 5.350 23 C 0.172 3.828 24 C -0.156 4.156 25 C -0.143 4.143 26 C -0.156 4.156 27 C 0.051 3.949 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.271 0.729 34 H 0.410 0.590 35 H 0.431 0.569 36 H 0.188 0.812 37 H 0.046 0.954 38 H 0.104 0.896 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.101 0.899 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.056 0.944 46 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.088 10.533 -13.396 31.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.179 4.179 3 C 0.145 3.855 4 H 0.057 0.943 5 C -0.579 4.579 6 H 0.069 0.931 7 C -0.172 4.172 8 N -0.573 5.573 9 Si 0.767 3.233 10 H -0.184 1.184 11 H -0.221 1.221 12 H -0.173 1.173 13 N -0.318 5.318 14 C 0.285 3.715 15 O -0.420 6.420 16 C 0.292 3.708 17 O -0.407 6.407 18 N -0.244 5.244 19 C -0.136 4.136 20 C -0.155 4.155 21 N -0.130 5.130 22 N -0.135 5.135 23 C 0.091 3.909 24 C -0.214 4.214 25 C -0.200 4.200 26 C -0.214 4.214 27 C -0.099 4.099 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.246 0.754 35 H 0.271 0.729 36 H 0.204 0.796 37 H 0.066 0.934 38 H 0.123 0.877 39 H 0.089 0.911 40 H 0.070 0.930 41 H 0.120 0.880 42 H 0.072 0.928 43 H 0.097 0.903 44 H 0.124 0.876 45 H 0.075 0.925 46 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -26.012 11.005 -14.523 31.759 hybrid contribution 0.799 -0.835 1.562 1.943 sum -25.212 10.170 -12.961 30.118 Atomic orbital electron populations 1.21796 0.94645 1.01099 1.01829 1.22242 0.96368 0.97885 1.01386 1.19023 0.93548 0.90081 0.82852 0.94254 1.21250 0.90281 1.39167 1.07161 0.93098 1.25629 0.95878 0.95710 0.99995 1.69991 1.10555 1.45838 1.30902 0.85970 0.79538 0.79986 0.77818 1.18423 1.22139 1.17327 1.45924 1.14746 1.53367 1.17768 1.19878 0.83300 0.80377 0.87929 1.90715 1.51364 1.59666 1.40216 1.20108 0.82540 0.80041 0.88095 1.90645 1.51621 1.58346 1.40102 1.42205 1.15445 1.52325 1.14457 1.17894 0.96595 1.10054 0.89065 1.24386 1.01220 0.99366 0.90524 1.77326 0.92846 1.19985 1.22822 1.48989 1.11956 1.42781 1.09789 1.21173 0.84108 0.92009 0.93570 1.22271 1.03368 0.93163 1.02611 1.21924 1.03170 1.02769 0.92159 1.22272 0.94015 1.00911 1.04207 1.22263 0.98621 0.99539 0.89464 0.93019 0.91962 0.93299 0.91553 0.93139 0.91993 0.75380 0.72943 0.79566 0.93447 0.87714 0.91050 0.92988 0.88016 0.92841 0.90274 0.87584 0.92523 0.76680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.85 8.51 71.98 0.61 -4.23 16 2 C -0.14 -5.84 5.11 30.60 0.16 -5.68 16 3 C 0.25 11.48 1.83 44.25 0.08 11.56 16 4 H 0.04 1.95 6.63 -2.39 -0.02 1.93 16 5 C -0.54 -29.63 9.31 25.60 0.24 -29.39 16 6 H 0.05 3.05 7.98 -2.91 -0.02 3.02 16 7 C 0.03 1.56 5.45 84.66 0.46 2.02 16 8 N -0.93 -56.31 13.96 21.45 0.30 -56.02 16 9 Si 0.94 43.43 24.41 68.60 1.67 45.10 16 10 H -0.26 -11.21 6.83 99.48 0.68 -10.53 16 11 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 12 H -0.25 -11.01 6.53 99.48 0.65 -10.36 16 13 N -0.67 -27.03 5.01 -447.56 -2.24 -29.28 16 14 C 0.50 18.27 6.45 87.23 0.56 18.83 16 15 O -0.54 -20.30 13.61 -3.26 -0.04 -20.34 16 16 C 0.51 16.32 7.86 87.23 0.69 17.01 16 17 O -0.53 -18.94 13.63 -3.41 -0.05 -18.99 16 18 N -0.60 -14.94 5.45 -305.42 -1.67 -16.60 16 19 C -0.03 -0.78 6.90 37.71 0.26 -0.52 16 20 C 0.03 0.89 10.84 85.35 0.93 1.81 16 21 N -0.31 -8.15 11.64 -56.72 -0.66 -8.81 16 22 N -0.35 -6.59 3.44 -307.18 -1.06 -7.64 16 23 C 0.17 1.95 1.24 3.60 0.00 1.95 16 24 C -0.16 -1.30 8.73 71.98 0.63 -0.67 16 25 C -0.14 -1.70 8.09 71.98 0.58 -1.12 16 26 C -0.16 -0.94 8.29 71.98 0.60 -0.34 16 27 C 0.05 0.87 10.64 83.61 0.89 1.76 16 28 H 0.05 1.80 5.65 -2.39 -0.01 1.78 16 29 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.05 1.79 7.85 -2.38 -0.02 1.77 16 31 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.05 2.18 3.22 -2.38 -0.01 2.17 16 33 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 34 H 0.41 16.30 8.01 -92.71 -0.74 15.55 16 35 H 0.43 8.69 8.29 -92.71 -0.77 7.92 16 36 H 0.19 5.99 5.92 -2.91 -0.02 5.98 16 37 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 41 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.05 0.85 8.04 -2.39 -0.02 0.83 16 43 H 0.08 0.30 7.36 -2.39 -0.02 0.28 16 44 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 45 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.22 1.74 7.55 -2.91 -0.02 1.71 16 Total: -1.00 -70.38 368.96 2.37 -68.01 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: -0.58 Total: 31.59 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 6.68 Total: 12.98 kcal Atomic # 7 Polarization: -113.02 SS G_CDS: -5.33 Total: -118.35 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -0.09 Total: -39.34 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.67 Total: 45.10 kcal Total: -70.38 2.37 -68.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128425907.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.544 kcal (2) G-P(sol) polarization free energy of solvation -70.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds