Wall clock time and date at job start Tue Mar 31 2020 12:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47190 * 2 1 4 4 H 1.09002 * 109.46710 * 305.00030 * 3 2 1 5 5 C 1.50699 * 109.47251 * 185.00400 * 3 2 1 6 6 H 1.08000 * 119.99718 * 240.00054 * 5 3 2 7 7 C 1.37873 * 120.00550 * 59.99409 * 5 3 2 8 8 N 1.31519 * 119.99434 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 120.00417 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46871 * 89.99956 * 9 7 5 11 11 H 1.48497 * 109.47424 * 210.00337 * 9 7 5 12 12 H 1.48501 * 109.47300 * 330.00377 * 9 7 5 13 13 N 1.46498 * 109.47172 * 64.99662 * 3 2 1 14 14 C 1.34774 * 120.00546 * 275.00070 * 13 3 2 15 15 O 1.21362 * 119.99473 * 0.02562 * 14 13 3 16 16 C 1.49322 * 120.00210 * 179.97438 * 14 13 3 17 17 O 1.21399 * 120.00156 * 359.97438 * 16 14 13 18 18 N 1.34778 * 119.99873 * 180.02562 * 16 14 13 19 19 C 1.40481 * 119.99939 * 175.03559 * 18 16 14 20 20 C 1.40346 * 126.11186 * 301.47605 * 19 18 16 21 21 C 1.50694 * 125.89591 * 359.97438 * 20 19 18 22 22 N 1.30831 * 108.20613 * 179.85669 * 20 19 18 23 23 N 1.40052 * 108.36352 * 0.40485 * 22 20 19 24 24 C 1.46499 * 125.99280 * 179.75966 * 23 22 20 25 25 C 1.53000 * 109.47473 * 269.97800 * 24 23 22 26 26 C 1.35223 * 108.01741 * 359.74028 * 23 22 20 27 27 C 1.50700 * 126.18149 * 179.97438 * 26 23 22 28 28 H 1.09000 * 109.46797 * 60.00092 * 1 2 3 29 29 H 1.09001 * 109.46666 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47121 * 299.99976 * 1 2 3 31 31 H 1.09001 * 109.47121 * 240.00024 * 2 1 3 32 32 H 1.09000 * 109.46797 * 119.99908 * 2 1 3 33 33 H 0.97007 * 119.99378 * 179.97438 * 8 7 5 34 34 H 0.97006 * 119.99995 * 95.00439 * 13 3 2 35 35 H 0.97000 * 120.00277 * 355.03364 * 18 16 14 36 36 H 1.09007 * 109.46750 * 107.82518 * 21 20 19 37 37 H 1.08996 * 109.47722 * 227.82970 * 21 20 19 38 38 H 1.09002 * 109.47343 * 347.83280 * 21 20 19 39 39 H 1.09009 * 109.47115 * 29.97664 * 24 23 22 40 40 H 1.08996 * 109.47846 * 149.97198 * 24 23 22 41 41 H 1.09001 * 109.47068 * 59.99860 * 25 24 23 42 42 H 1.09003 * 109.47275 * 179.97438 * 25 24 23 43 43 H 1.08994 * 109.47196 * 299.99772 * 25 24 23 44 44 H 1.08993 * 109.47274 * 270.02603 * 27 26 23 45 45 H 1.09003 * 109.46913 * 30.03157 * 27 26 23 46 46 H 1.09001 * 109.46630 * 150.02577 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1434 0.8784 -1.2280 8 7 3.4062 0.3373 -2.1733 9 14 6.0050 0.8800 -1.3812 10 1 6.5538 -0.3520 -0.7598 11 1 6.3835 0.9214 -2.8165 12 1 6.5576 2.0719 -0.6890 13 7 1.6524 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3400 2.6319 0.4337 16 6 0.0400 3.3315 2.6431 17 8 0.8149 3.3629 3.5770 18 7 -1.1775 3.8980 2.7584 19 6 -1.5894 4.4333 3.9902 20 6 -1.6897 3.7350 5.2034 21 6 -1.3740 2.2763 5.4120 22 7 -2.1022 4.5696 6.1226 23 7 -2.2880 5.8240 5.5281 24 6 -2.7485 7.0383 6.2061 25 6 -4.2750 7.1141 6.1358 26 6 -1.9675 5.7180 4.2187 27 6 -2.0206 6.8248 3.1973 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8293 -0.0605 -2.9503 34 1 2.2720 2.1232 1.9978 35 1 -1.7694 3.9362 1.9908 36 1 -0.4459 2.1825 5.9759 37 1 -2.1853 1.8045 5.9663 38 1 -1.2622 1.7867 4.4445 39 1 -2.4336 7.0136 7.2494 40 1 -2.3185 7.9126 5.7176 41 1 -4.7050 6.2398 6.6245 42 1 -4.6176 8.0173 6.6407 43 1 -4.5899 7.1388 5.0927 44 1 -3.0066 6.8439 2.7333 45 1 -1.8306 7.7801 3.6866 46 1 -1.2628 6.6508 2.4334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128426934.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:20 Heat of formation + Delta-G solvation = -4.356631 kcal Electronic energy + Delta-G solvation = -27684.742918 eV Core-core repulsion = 23804.045069 eV Total energy + Delta-G solvation = -3880.697849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.66344 -39.95318 -38.02909 -35.56331 -35.17595 -34.25195 -32.43100 -32.19754 -30.94829 -30.41669 -27.72055 -27.32156 -26.92417 -24.55409 -23.27808 -22.69687 -20.77472 -20.05058 -19.61696 -19.32093 -18.35754 -17.24497 -16.32562 -16.11737 -15.60937 -15.56124 -15.14850 -15.01805 -14.54010 -14.25789 -13.99275 -13.66358 -13.45031 -13.37598 -13.30731 -13.12590 -12.72593 -12.56904 -12.46112 -12.17115 -12.05126 -11.96952 -11.65761 -11.56690 -11.31108 -11.16757 -10.97640 -10.92885 -10.82829 -10.32869 -10.24453 -9.77264 -9.67672 -9.17826 -9.10876 -8.97524 -8.54590 -8.14274 -7.97626 -6.15735 -4.25067 1.58142 1.94504 2.15258 2.57345 3.02557 3.24787 3.31741 3.35163 3.81716 4.15961 4.28668 4.36525 4.42650 4.58430 4.68346 4.78480 4.87254 5.13700 5.15552 5.19364 5.21551 5.25487 5.34095 5.55038 5.67308 5.67832 5.68290 5.86037 5.95740 6.25161 6.34329 6.39729 6.58503 6.69352 6.86729 6.98087 7.07374 7.20413 7.30892 7.31492 7.54269 7.60387 7.67280 7.82062 8.10401 8.14418 8.51802 8.67114 8.90848 9.41686 10.89633 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023894 B = 0.002715 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.584541 B =10312.367808 C =10498.156572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.054 0.946 5 C -0.536 4.536 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.903 3.097 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.669 5.669 14 C 0.495 3.505 15 O -0.532 6.532 16 C 0.506 3.494 17 O -0.510 6.510 18 N -0.627 5.627 19 C -0.009 4.009 20 C 0.096 3.904 21 C -0.069 4.069 22 N -0.291 5.291 23 N -0.367 5.367 24 C 0.132 3.868 25 C -0.170 4.170 26 C 0.082 3.918 27 C -0.092 4.092 28 H 0.051 0.949 29 H 0.026 0.974 30 H 0.036 0.964 31 H 0.103 0.897 32 H 0.034 0.966 33 H 0.265 0.735 34 H 0.401 0.599 35 H 0.416 0.584 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.843 11.863 13.210 22.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.072 0.928 5 C -0.574 4.574 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.318 5.318 14 C 0.274 3.726 15 O -0.411 6.411 16 C 0.288 3.712 17 O -0.383 6.383 18 N -0.278 5.278 19 C -0.113 4.113 20 C -0.072 4.072 21 C -0.127 4.127 22 N -0.113 5.113 23 N -0.150 5.150 24 C 0.011 3.989 25 C -0.228 4.228 26 C -0.047 4.047 27 C -0.150 4.150 28 H 0.070 0.930 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.121 0.879 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.236 0.764 35 H 0.254 0.746 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.100 0.900 45 H 0.091 0.909 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.116 11.995 14.288 23.394 hybrid contribution 1.171 -0.024 -0.907 1.481 sum -12.945 11.971 13.381 22.135 Atomic orbital electron populations 1.21853 0.98277 0.98366 1.01077 1.21963 0.92677 0.99431 1.02715 1.18989 0.94686 0.89384 0.80222 0.92794 1.21218 0.90401 1.39281 1.06498 0.91806 1.24868 0.98768 0.94662 0.95264 1.69890 1.35206 1.37515 1.09340 0.86419 0.84639 0.78575 0.77343 1.20467 1.21062 1.19787 1.46449 1.13530 1.52712 1.19123 1.19668 0.84367 0.81379 0.87202 1.90731 1.51158 1.59595 1.39580 1.20927 0.81625 0.79225 0.89400 1.90741 1.50246 1.56806 1.40552 1.42393 1.16671 1.58218 1.10526 1.16963 1.15156 0.91150 0.88001 1.22398 0.97246 0.96961 0.90576 1.20147 1.02245 0.87217 1.03129 1.77308 1.24407 0.88891 1.20710 1.48206 1.52437 1.08889 1.05491 1.21644 0.95513 0.82793 0.98927 1.22194 0.94355 1.03215 1.03055 1.20860 1.01674 0.95606 0.86582 1.20460 1.03894 0.94425 0.96217 0.92972 0.95538 0.94530 0.87917 0.94685 0.92486 0.76446 0.74581 0.90065 0.90859 0.90926 0.88582 0.88960 0.91541 0.90486 0.91947 0.89951 0.90872 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.16 0.32 -2.63 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.59 2.24 -69.09 -0.15 6.44 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.54 -14.00 8.73 -34.44 -0.30 -14.30 16 6 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.12 11.29 55.43 0.63 -23.50 16 9 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.67 -14.18 5.01 -55.41 -0.28 -14.46 16 14 C 0.50 9.74 6.45 -11.65 -0.08 9.66 16 15 O -0.53 -11.22 13.62 5.49 0.07 -11.14 16 16 C 0.51 8.77 6.89 -11.64 -0.08 8.69 16 17 O -0.51 -9.75 15.56 5.45 0.08 -9.67 16 18 N -0.63 -9.04 5.26 -10.48 -0.06 -9.10 16 19 C -0.01 -0.13 5.94 -83.95 -0.50 -0.62 16 20 C 0.10 1.40 6.90 -82.23 -0.57 0.84 16 21 C -0.07 -0.90 9.60 36.00 0.35 -0.56 16 22 N -0.29 -4.12 12.56 33.76 0.42 -3.69 16 23 N -0.37 -4.19 3.62 -56.94 -0.21 -4.40 16 24 C 0.13 0.93 6.96 -4.04 -0.03 0.90 16 25 C -0.17 -0.95 10.24 37.16 0.38 -0.57 16 26 C 0.08 0.96 6.96 -81.95 -0.57 0.39 16 27 C -0.09 -0.73 10.07 36.01 0.36 -0.37 16 28 H 0.05 1.16 7.85 -51.93 -0.41 0.76 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.04 0.75 5.64 -51.93 -0.29 0.46 16 31 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.40 8.08 8.01 -40.82 -0.33 7.75 16 35 H 0.42 5.36 8.31 -40.82 -0.34 5.03 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.00 7.27 -51.93 -0.38 0.62 16 39 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 40 H 0.09 0.45 7.06 -51.93 -0.37 0.08 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.44 7.09 -51.93 -0.37 0.07 16 46 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 380.23 15.07 5.73 5.73 Total: -1.00 -31.39 380.23 -6.68 -38.07 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -6.95 Total: 10.34 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -1.11 Total: 6.35 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.51 Total: -55.15 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.16 Total: -20.81 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.39 -6.68 -38.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128426934.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.715 kcal (2) G-P(sol) polarization free energy of solvation -31.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds