Wall clock time and date at job start Tue Mar 31 2020 12:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47190 * 2 1 4 4 H 1.09002 * 109.46710 * 305.00030 * 3 2 1 5 5 C 1.50699 * 109.47251 * 185.00400 * 3 2 1 6 6 H 1.08000 * 119.99718 * 240.00054 * 5 3 2 7 7 C 1.37873 * 120.00550 * 59.99409 * 5 3 2 8 8 N 1.31519 * 119.99434 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 120.00417 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46871 * 89.99956 * 9 7 5 11 11 H 1.48497 * 109.47424 * 210.00337 * 9 7 5 12 12 H 1.48501 * 109.47300 * 330.00377 * 9 7 5 13 13 N 1.46498 * 109.47172 * 64.99662 * 3 2 1 14 14 C 1.34774 * 120.00546 * 275.00070 * 13 3 2 15 15 O 1.21362 * 119.99473 * 0.02562 * 14 13 3 16 16 C 1.49322 * 120.00210 * 179.97438 * 14 13 3 17 17 O 1.21399 * 120.00156 * 359.97438 * 16 14 13 18 18 N 1.34778 * 119.99873 * 180.02562 * 16 14 13 19 19 C 1.40481 * 119.99939 * 175.03559 * 18 16 14 20 20 C 1.40346 * 126.11186 * 301.47605 * 19 18 16 21 21 C 1.50694 * 125.89591 * 359.97438 * 20 19 18 22 22 N 1.30831 * 108.20613 * 179.85669 * 20 19 18 23 23 N 1.40052 * 108.36352 * 0.40485 * 22 20 19 24 24 C 1.46499 * 125.99280 * 179.75966 * 23 22 20 25 25 C 1.53000 * 109.47473 * 269.97800 * 24 23 22 26 26 C 1.35223 * 108.01741 * 359.74028 * 23 22 20 27 27 C 1.50700 * 126.18149 * 179.97438 * 26 23 22 28 28 H 1.09000 * 109.46797 * 60.00092 * 1 2 3 29 29 H 1.09001 * 109.46666 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47121 * 299.99976 * 1 2 3 31 31 H 1.09001 * 109.47121 * 240.00024 * 2 1 3 32 32 H 1.09000 * 109.46797 * 119.99908 * 2 1 3 33 33 H 0.97007 * 119.99378 * 179.97438 * 8 7 5 34 34 H 0.97006 * 119.99995 * 95.00439 * 13 3 2 35 35 H 0.97000 * 120.00277 * 355.03364 * 18 16 14 36 36 H 1.09007 * 109.46750 * 107.82518 * 21 20 19 37 37 H 1.08996 * 109.47722 * 227.82970 * 21 20 19 38 38 H 1.09002 * 109.47343 * 347.83280 * 21 20 19 39 39 H 1.09009 * 109.47115 * 29.97664 * 24 23 22 40 40 H 1.08996 * 109.47846 * 149.97198 * 24 23 22 41 41 H 1.09001 * 109.47068 * 59.99860 * 25 24 23 42 42 H 1.09003 * 109.47275 * 179.97438 * 25 24 23 43 43 H 1.08994 * 109.47196 * 299.99772 * 25 24 23 44 44 H 1.08993 * 109.47274 * 270.02603 * 27 26 23 45 45 H 1.09003 * 109.46913 * 30.03157 * 27 26 23 46 46 H 1.09001 * 109.46630 * 150.02577 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1434 0.8784 -1.2280 8 7 3.4062 0.3373 -2.1733 9 14 6.0050 0.8800 -1.3812 10 1 6.5538 -0.3520 -0.7598 11 1 6.3835 0.9214 -2.8165 12 1 6.5576 2.0719 -0.6890 13 7 1.6524 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3400 2.6319 0.4337 16 6 0.0400 3.3315 2.6431 17 8 0.8149 3.3629 3.5770 18 7 -1.1775 3.8980 2.7584 19 6 -1.5894 4.4333 3.9902 20 6 -1.6897 3.7350 5.2034 21 6 -1.3740 2.2763 5.4120 22 7 -2.1022 4.5696 6.1226 23 7 -2.2880 5.8240 5.5281 24 6 -2.7485 7.0383 6.2061 25 6 -4.2750 7.1141 6.1358 26 6 -1.9675 5.7180 4.2187 27 6 -2.0206 6.8248 3.1973 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8293 -0.0605 -2.9503 34 1 2.2720 2.1232 1.9978 35 1 -1.7694 3.9362 1.9908 36 1 -0.4459 2.1825 5.9759 37 1 -2.1853 1.8045 5.9663 38 1 -1.2622 1.7867 4.4445 39 1 -2.4336 7.0136 7.2494 40 1 -2.3185 7.9126 5.7176 41 1 -4.7050 6.2398 6.6245 42 1 -4.6176 8.0173 6.6407 43 1 -4.5899 7.1388 5.0927 44 1 -3.0066 6.8439 2.7333 45 1 -1.8306 7.7801 3.6866 46 1 -1.2628 6.6508 2.4334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128426934.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:19 Heat of formation + Delta-G solvation = -26.046701 kcal Electronic energy + Delta-G solvation = -27685.683471 eV Core-core repulsion = 23804.045069 eV Total energy + Delta-G solvation = -3881.638401 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.66569 -41.42759 -39.55341 -37.16537 -36.34280 -35.33386 -34.27311 -33.02826 -32.77359 -31.31713 -29.21430 -28.52319 -27.95215 -26.00878 -24.72269 -23.80467 -22.23817 -21.28860 -21.06866 -20.56720 -19.81264 -18.36231 -18.10625 -17.41708 -17.06081 -16.81843 -16.58139 -16.28199 -15.92330 -15.42104 -15.12366 -14.98667 -14.65063 -14.59448 -14.31169 -14.07925 -13.90791 -13.78391 -13.45948 -13.38223 -13.18215 -13.14367 -12.97937 -12.93054 -12.72030 -12.69569 -12.58701 -12.21938 -12.13235 -12.08957 -11.90832 -11.58032 -11.07710 -10.91740 -10.59599 -10.49119 -10.09734 -9.79421 -9.17423 -8.16956 -6.33588 0.39166 0.74178 1.20715 1.46011 1.46736 1.50775 1.56888 1.76414 2.30259 2.41697 2.90901 3.12897 3.50556 3.57048 3.65799 3.92560 4.08854 4.09750 4.32557 4.37455 4.51667 4.58225 4.64657 4.66226 4.68501 4.71407 4.74802 4.76873 4.89997 5.02169 5.05334 5.07581 5.16235 5.22957 5.25241 5.40441 5.43475 5.57413 5.60218 5.73650 5.82683 6.02568 6.10489 6.14157 6.59048 6.68886 6.70204 6.94864 7.16991 7.38700 8.88182 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023894 B = 0.002715 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.584541 B =10312.367808 C =10498.156572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.123 4.123 3 C 0.277 3.723 4 H 0.016 0.984 5 C -0.553 4.553 6 H 0.066 0.934 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.269 1.269 13 N -0.673 5.673 14 C 0.498 3.502 15 O -0.546 6.546 16 C 0.516 3.484 17 O -0.530 6.530 18 N -0.605 5.605 19 C -0.049 4.049 20 C 0.077 3.923 21 C -0.066 4.066 22 N -0.315 5.315 23 N -0.361 5.361 24 C 0.120 3.880 25 C -0.163 4.163 26 C 0.097 3.903 27 C -0.092 4.092 28 H 0.036 0.964 29 H 0.048 0.952 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.038 0.962 33 H 0.267 0.733 34 H 0.407 0.593 35 H 0.423 0.577 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.099 0.901 40 H 0.122 0.878 41 H 0.046 0.954 42 H 0.104 0.896 43 H 0.063 0.937 44 H 0.105 0.895 45 H 0.099 0.901 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.424 13.672 14.193 24.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 C 0.175 3.825 4 H 0.034 0.966 5 C -0.591 4.591 6 H 0.085 0.915 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.792 3.208 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.193 1.193 13 N -0.322 5.322 14 C 0.278 3.722 15 O -0.426 6.426 16 C 0.297 3.703 17 O -0.405 6.405 18 N -0.255 5.255 19 C -0.153 4.153 20 C -0.089 4.089 21 C -0.124 4.124 22 N -0.138 5.138 23 N -0.144 5.144 24 C 0.000 4.000 25 C -0.221 4.221 26 C -0.034 4.034 27 C -0.150 4.150 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.242 0.758 35 H 0.263 0.737 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.118 0.882 40 H 0.140 0.860 41 H 0.065 0.935 42 H 0.122 0.878 43 H 0.082 0.918 44 H 0.124 0.876 45 H 0.118 0.882 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.746 13.831 15.307 25.358 hybrid contribution 1.234 -0.461 -1.165 1.758 sum -13.512 13.369 14.142 23.693 Atomic orbital electron populations 1.21704 0.96497 0.99636 1.00460 1.21821 0.94208 0.98597 1.01608 1.18617 0.93969 0.89562 0.80386 0.96644 1.21520 0.91326 1.39422 1.06820 0.91545 1.25665 1.03088 0.94229 0.94907 1.70016 1.36929 1.38023 1.09762 0.85412 0.79350 0.78740 0.77253 1.19797 1.20857 1.19326 1.46235 1.14448 1.53271 1.18256 1.20029 0.83540 0.80696 0.87959 1.90719 1.51436 1.59919 1.40489 1.20304 0.82472 0.79586 0.87906 1.90736 1.51095 1.58016 1.40693 1.42133 1.15383 1.56801 1.11185 1.17205 1.17931 0.92539 0.87596 1.22599 0.97770 0.97547 0.91027 1.20113 1.02574 0.87140 1.02623 1.77244 1.25193 0.90141 1.21227 1.48669 1.51113 1.09059 1.05536 1.22121 0.96650 0.81908 0.99278 1.22149 0.93028 1.03614 1.03282 1.21379 0.99091 0.95610 0.87285 1.20637 1.04976 0.94148 0.95222 0.94511 0.93297 0.94077 0.90336 0.94278 0.92392 0.75809 0.73744 0.90730 0.89185 0.91977 0.88238 0.86017 0.93506 0.87789 0.91775 0.87626 0.88211 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.37 8.51 71.98 0.61 -4.76 16 2 C -0.12 -5.94 5.45 30.60 0.17 -5.77 16 3 C 0.28 13.96 2.24 44.24 0.10 14.06 16 4 H 0.02 0.90 7.58 -2.39 -0.02 0.89 16 5 C -0.55 -29.27 8.73 25.60 0.22 -29.04 16 6 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 7 C 0.02 1.16 5.29 84.65 0.45 1.61 16 8 N -0.91 -50.58 11.29 21.45 0.24 -50.34 16 9 Si 0.97 42.00 29.54 68.60 2.03 44.03 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 13 N -0.67 -28.98 5.01 -447.57 -2.24 -31.23 16 14 C 0.50 19.78 6.45 87.23 0.56 20.34 16 15 O -0.55 -23.30 13.62 -3.28 -0.04 -23.35 16 16 C 0.52 17.87 6.89 87.23 0.60 18.47 16 17 O -0.53 -20.32 15.56 -3.40 -0.05 -20.38 16 18 N -0.61 -17.15 5.26 -305.42 -1.61 -18.75 16 19 C -0.05 -1.35 5.94 37.71 0.22 -1.13 16 20 C 0.08 2.24 6.90 43.22 0.30 2.54 16 21 C -0.07 -1.75 9.60 71.23 0.68 -1.06 16 22 N -0.32 -8.69 12.56 -47.10 -0.59 -9.28 16 23 N -0.36 -7.54 3.62 -334.06 -1.21 -8.75 16 24 C 0.12 1.33 6.96 86.38 0.60 1.93 16 25 C -0.16 -1.37 10.24 71.98 0.74 -0.63 16 26 C 0.10 2.08 6.96 41.48 0.29 2.37 16 27 C -0.09 -1.18 10.07 71.24 0.72 -0.46 16 28 H 0.04 1.65 7.85 -2.39 -0.02 1.63 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.04 1.69 5.64 -2.39 -0.01 1.68 16 31 H 0.08 4.19 5.95 -2.39 -0.01 4.18 16 32 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.27 14.05 8.31 -92.70 -0.77 13.28 16 34 H 0.41 16.61 8.01 -92.70 -0.74 15.86 16 35 H 0.42 10.62 8.31 -92.71 -0.77 9.85 16 36 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 37 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.06 1.73 7.27 -2.39 -0.02 1.72 16 39 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.12 0.66 7.06 -2.39 -0.02 0.64 16 41 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.10 0.77 7.09 -2.39 -0.02 0.75 16 46 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -68.76 380.23 2.29 -66.47 By element: Atomic # 1 Polarization: 33.60 SS G_CDS: -0.49 Total: 33.10 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 6.26 Total: 18.47 kcal Atomic # 7 Polarization: -112.94 SS G_CDS: -5.41 Total: -118.35 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -0.10 Total: -43.73 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -68.76 2.29 -66.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128426934.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.423 kcal (2) G-P(sol) polarization free energy of solvation -68.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds