Wall clock time and date at job start Tue Mar 31 2020 12:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47007 * 2 1 4 4 H 1.08994 * 109.47606 * 54.99686 * 3 2 1 5 5 C 1.50697 * 109.47316 * 175.00140 * 3 2 1 6 6 H 1.08000 * 120.00483 * 119.99087 * 5 3 2 7 7 C 1.37877 * 119.99628 * 299.99714 * 5 3 2 8 8 N 1.31515 * 120.00087 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00072 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46974 * 59.99852 * 9 7 5 11 11 H 1.48498 * 109.47582 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47116 * 300.00253 * 9 7 5 13 13 N 1.46503 * 109.46917 * 294.99543 * 3 2 1 14 14 C 1.34781 * 119.99895 * 85.00342 * 13 3 2 15 15 O 1.21587 * 119.99854 * 359.97438 * 14 13 3 16 16 N 1.34777 * 120.00208 * 180.02562 * 14 13 3 17 17 C 1.39501 * 120.00214 * 179.97438 * 16 14 13 18 18 C 1.36105 * 126.21170 * 359.97138 * 17 16 14 19 19 C 1.39768 * 107.82272 * 180.02562 * 18 17 16 20 20 N 1.30839 * 108.32329 * 359.97438 * 19 18 17 21 21 N 1.35244 * 126.21507 * 179.97438 * 17 16 14 22 22 C 1.46497 * 126.04590 * 359.97438 * 21 17 16 23 23 C 1.52999 * 109.47329 * 89.99629 * 22 21 17 24 24 H 1.09000 * 110.43657 * 305.69940 * 23 22 21 25 25 C 1.54812 * 110.48657 * 183.15653 * 23 22 21 26 26 C 1.55231 * 101.98449 * 220.51875 * 25 23 22 27 27 O 1.44379 * 103.56535 * 36.87974 * 26 25 23 28 28 C 1.43744 * 106.97778 * 320.01234 * 27 26 25 29 29 H 1.09004 * 109.46974 * 60.00281 * 1 2 3 30 30 H 1.09000 * 109.47349 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47407 * 300.00565 * 1 2 3 32 32 H 1.08998 * 109.47065 * 239.99856 * 2 1 3 33 33 H 1.09004 * 109.47181 * 119.99206 * 2 1 3 34 34 H 0.97006 * 119.99787 * 180.02562 * 8 7 5 35 35 H 0.96994 * 120.00461 * 265.00100 * 13 3 2 36 36 H 0.97003 * 119.99490 * 359.97438 * 16 14 13 37 37 H 1.07999 * 126.08879 * 359.76059 * 18 17 16 38 38 H 1.08000 * 125.83785 * 179.97438 * 19 18 17 39 39 H 1.09004 * 109.47061 * 209.99682 * 22 21 17 40 40 H 1.08994 * 109.47022 * 329.98998 * 22 21 17 41 41 H 1.08995 * 110.90921 * 338.63920 * 25 23 22 42 42 H 1.08997 * 110.91101 * 102.24774 * 25 23 22 43 43 H 1.08994 * 110.51748 * 278.38221 * 26 25 23 44 44 H 1.09006 * 110.77639 * 155.50265 * 26 25 23 45 45 H 1.09005 * 109.87359 * 267.08962 * 28 27 26 46 46 H 1.08996 * 110.00473 * 146.01217 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5418 1.4444 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1432 0.8786 1.2280 8 7 3.4061 0.3368 2.1729 9 14 6.0049 0.8802 1.3812 10 1 6.5004 2.2802 1.3808 11 1 6.3978 0.2170 2.6505 12 1 6.5966 0.1454 0.2344 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3671 15 8 -0.3416 2.6318 -0.4322 16 7 0.0783 3.2664 -2.5189 17 6 -1.1818 3.8527 -2.6384 18 6 -2.1455 3.8903 -1.6780 19 6 -3.2485 4.5678 -2.2050 20 7 -2.9643 4.9253 -3.4311 21 7 -1.6679 4.4870 -3.7295 22 6 -0.9629 4.6816 -4.9989 23 6 -1.2513 3.5011 -5.9286 24 1 -1.0078 2.5600 -5.4355 25 6 -0.4545 3.6435 -7.2482 26 6 -1.4943 3.1813 -8.3041 27 8 -2.7439 3.6972 -7.7972 28 6 -2.7272 3.5118 -6.3718 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8901 34 1 3.8292 -0.0610 2.9499 35 1 2.2719 2.1231 -1.9978 36 1 0.6979 3.2920 -3.2649 37 1 -2.0726 3.4676 -0.6868 38 1 -4.1767 4.7629 -1.6884 39 1 -1.3052 5.6046 -5.4668 40 1 0.1092 4.7443 -4.8132 41 1 -0.1635 4.6802 -7.4171 42 1 0.4187 2.9910 -7.2477 43 1 -1.5231 2.0933 -8.3611 44 1 -1.2700 3.6099 -9.2810 45 1 -3.1979 2.5624 -6.1161 46 1 -3.2551 4.3306 -5.8831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159715857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:41 Heat of formation + Delta-G solvation = 8.485905 kcal Electronic energy + Delta-G solvation = -27839.961564 eV Core-core repulsion = 23959.820609 eV Total energy + Delta-G solvation = -3880.140955 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.41531 -39.73287 -39.31807 -35.61767 -34.87004 -34.12914 -32.49231 -31.53675 -30.94177 -29.40835 -28.58047 -26.87040 -26.08257 -23.32353 -23.01199 -22.05512 -21.33589 -20.82895 -19.82866 -19.60170 -18.26518 -17.53559 -16.95660 -16.55118 -15.96688 -15.54034 -15.44531 -15.22396 -14.91097 -14.47042 -14.32086 -13.80377 -13.67302 -13.40823 -13.26798 -12.95918 -12.71594 -12.58608 -12.31241 -12.05237 -11.71961 -11.65344 -11.39291 -11.31529 -11.17525 -11.06721 -10.91379 -10.65172 -10.57223 -10.37811 -10.23208 -9.96366 -9.66765 -9.39763 -9.12398 -8.88197 -8.57806 -8.10845 -7.68694 -6.19183 -4.29200 1.98187 2.16020 3.08590 3.09255 3.20566 3.26871 3.27943 3.61375 3.80635 4.02493 4.23282 4.25814 4.34703 4.65658 4.72964 4.80404 4.82340 4.92642 5.10730 5.12583 5.26814 5.33504 5.35737 5.46302 5.59158 5.65318 5.74362 5.78168 6.20666 6.34527 6.37570 6.42922 6.54469 6.60012 6.86189 6.95909 7.03762 7.18892 7.27447 7.30585 7.39304 7.56632 7.73405 7.83043 7.95026 8.11192 8.60838 8.73067 9.10137 9.38523 10.86042 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016761 B = 0.002973 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.099271 B = 9414.709473 C =10268.455664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.288 3.712 4 H 0.052 0.948 5 C -0.538 4.538 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.714 5.714 14 C 0.700 3.300 15 O -0.558 6.558 16 N -0.671 5.671 17 C 0.339 3.661 18 C -0.285 4.285 19 C 0.062 3.938 20 N -0.306 5.306 21 N -0.396 5.396 22 C 0.143 3.857 23 C -0.143 4.143 24 H 0.088 0.912 25 C -0.148 4.148 26 C 0.046 3.954 27 O -0.378 6.378 28 C 0.053 3.947 29 H 0.038 0.962 30 H 0.022 0.978 31 H 0.051 0.949 32 H 0.030 0.970 33 H 0.100 0.900 34 H 0.266 0.734 35 H 0.386 0.614 36 H 0.399 0.601 37 H 0.176 0.824 38 H 0.182 0.818 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.094 0.906 45 H 0.057 0.943 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.839 5.732 -17.006 19.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 C 0.186 3.814 4 H 0.070 0.930 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.366 5.366 14 C 0.399 3.601 15 O -0.433 6.433 16 N -0.322 5.322 17 C 0.118 3.882 18 C -0.317 4.317 19 C -0.124 4.124 20 N -0.128 5.128 21 N -0.184 5.184 22 C 0.021 3.979 23 C -0.163 4.163 24 H 0.107 0.893 25 C -0.186 4.186 26 C -0.031 4.031 27 O -0.297 6.297 28 C -0.023 4.023 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.218 0.782 36 H 0.233 0.767 37 H 0.193 0.807 38 H 0.199 0.801 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.079 0.921 44 H 0.112 0.888 45 H 0.075 0.925 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.959 6.224 -17.117 19.877 hybrid contribution 2.225 -0.617 0.164 2.315 sum -5.734 5.607 -16.952 18.754 Atomic orbital electron populations 1.21824 0.98170 0.98064 1.01310 1.21969 0.92763 0.99748 1.02312 1.18771 0.94078 0.88909 0.79603 0.93005 1.21157 0.90536 1.39471 1.06446 0.92148 1.24866 0.98648 0.94707 0.95322 1.69879 1.35291 1.37248 1.09300 0.86501 0.84714 0.78327 0.77510 1.20184 1.21070 1.20174 1.45833 1.12772 1.58458 1.19503 1.15843 0.83895 0.78842 0.81482 1.90845 1.51269 1.63537 1.37685 1.42260 1.13700 1.59077 1.17156 1.17753 0.86627 0.94771 0.89073 1.21724 0.93013 1.13859 1.03087 1.23747 0.99592 0.96969 0.92084 1.77358 0.93100 1.24885 1.17436 1.48528 1.12710 1.46937 1.10256 1.21634 0.95944 0.99185 0.81103 1.23037 0.96957 0.99675 0.96595 0.89336 1.23202 0.98857 1.03220 0.93330 1.23581 0.83053 0.98671 0.97768 1.88890 1.37620 1.82837 1.20369 1.23246 0.95226 1.02660 0.81208 0.94341 0.95904 0.92991 0.95090 0.88150 0.92379 0.78240 0.76737 0.80679 0.80078 0.88095 0.89369 0.89882 0.89534 0.92142 0.88787 0.92498 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.51 37.16 0.32 -2.61 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.13 16 3 C 0.29 6.82 2.24 -69.08 -0.15 6.66 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 5 C -0.54 -13.47 8.73 -34.44 -0.30 -13.77 16 6 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.78 11.29 55.43 0.63 -23.15 16 9 Si 0.90 19.86 29.54 -169.99 -5.02 14.83 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 13 N -0.71 -13.56 5.03 -59.81 -0.30 -13.86 16 14 C 0.70 12.97 7.10 -86.91 -0.62 12.35 16 15 O -0.56 -12.15 10.60 5.29 0.06 -12.09 16 16 N -0.67 -9.59 5.42 -15.84 -0.09 -9.67 16 17 C 0.34 5.07 7.66 -153.15 -1.17 3.90 16 18 C -0.28 -4.62 9.65 -39.78 -0.38 -5.01 16 19 C 0.06 0.85 12.01 -17.40 -0.21 0.64 16 20 N -0.31 -4.27 11.71 30.60 0.36 -3.91 16 21 N -0.40 -5.05 3.44 -60.39 -0.21 -5.25 16 22 C 0.14 1.29 5.34 -4.04 -0.02 1.27 16 23 C -0.14 -1.21 3.28 -89.09 -0.29 -1.50 16 24 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 25 C -0.15 -0.92 6.73 -24.59 -0.17 -1.09 16 26 C 0.05 0.34 7.72 38.34 0.30 0.64 16 27 O -0.38 -4.14 11.52 -35.23 -0.41 -4.54 16 28 C 0.05 0.56 7.23 37.73 0.27 0.83 16 29 H 0.04 0.81 5.64 -51.93 -0.29 0.51 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 34 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 35 H 0.39 6.17 8.55 -40.82 -0.35 5.82 16 36 H 0.40 4.25 7.98 -40.82 -0.33 3.92 16 37 H 0.18 3.24 5.82 -52.49 -0.31 2.94 16 38 H 0.18 1.89 8.06 -52.49 -0.42 1.46 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.09 0.62 7.50 -51.93 -0.39 0.23 16 41 H 0.08 0.45 7.87 -51.93 -0.41 0.04 16 42 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.10 1.17 6.79 -51.93 -0.35 0.81 16 LS Contribution 367.59 15.07 5.54 5.54 Total: -1.00 -30.54 367.59 -8.99 -39.54 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -6.88 Total: 11.73 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -2.67 Total: 0.84 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: 0.39 Total: -55.85 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.35 Total: -16.64 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.54 -8.99 -39.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159715857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.023 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds