Wall clock time and date at job start Tue Mar 31 2020 12:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47007 * 2 1 4 4 H 1.08994 * 109.47606 * 54.99686 * 3 2 1 5 5 C 1.50697 * 109.47316 * 175.00140 * 3 2 1 6 6 H 1.08000 * 120.00483 * 119.99087 * 5 3 2 7 7 C 1.37877 * 119.99628 * 299.99714 * 5 3 2 8 8 N 1.31515 * 120.00087 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00072 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46974 * 59.99852 * 9 7 5 11 11 H 1.48498 * 109.47582 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47116 * 300.00253 * 9 7 5 13 13 N 1.46503 * 109.46917 * 294.99543 * 3 2 1 14 14 C 1.34781 * 119.99895 * 85.00342 * 13 3 2 15 15 O 1.21587 * 119.99854 * 359.97438 * 14 13 3 16 16 N 1.34777 * 120.00208 * 180.02562 * 14 13 3 17 17 C 1.39501 * 120.00214 * 179.97438 * 16 14 13 18 18 C 1.36105 * 126.21170 * 359.97138 * 17 16 14 19 19 C 1.39768 * 107.82272 * 180.02562 * 18 17 16 20 20 N 1.30839 * 108.32329 * 359.97438 * 19 18 17 21 21 N 1.35244 * 126.21507 * 179.97438 * 17 16 14 22 22 C 1.46497 * 126.04590 * 359.97438 * 21 17 16 23 23 C 1.52999 * 109.47329 * 89.99629 * 22 21 17 24 24 H 1.09000 * 110.43657 * 305.69940 * 23 22 21 25 25 C 1.54812 * 110.48657 * 183.15653 * 23 22 21 26 26 C 1.55231 * 101.98449 * 220.51875 * 25 23 22 27 27 O 1.44379 * 103.56535 * 36.87974 * 26 25 23 28 28 C 1.43744 * 106.97778 * 320.01234 * 27 26 25 29 29 H 1.09004 * 109.46974 * 60.00281 * 1 2 3 30 30 H 1.09000 * 109.47349 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47407 * 300.00565 * 1 2 3 32 32 H 1.08998 * 109.47065 * 239.99856 * 2 1 3 33 33 H 1.09004 * 109.47181 * 119.99206 * 2 1 3 34 34 H 0.97006 * 119.99787 * 180.02562 * 8 7 5 35 35 H 0.96994 * 120.00461 * 265.00100 * 13 3 2 36 36 H 0.97003 * 119.99490 * 359.97438 * 16 14 13 37 37 H 1.07999 * 126.08879 * 359.76059 * 18 17 16 38 38 H 1.08000 * 125.83785 * 179.97438 * 19 18 17 39 39 H 1.09004 * 109.47061 * 209.99682 * 22 21 17 40 40 H 1.08994 * 109.47022 * 329.98998 * 22 21 17 41 41 H 1.08995 * 110.90921 * 338.63920 * 25 23 22 42 42 H 1.08997 * 110.91101 * 102.24774 * 25 23 22 43 43 H 1.08994 * 110.51748 * 278.38221 * 26 25 23 44 44 H 1.09006 * 110.77639 * 155.50265 * 26 25 23 45 45 H 1.09005 * 109.87359 * 267.08962 * 28 27 26 46 46 H 1.08996 * 110.00473 * 146.01217 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5418 1.4444 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1432 0.8786 1.2280 8 7 3.4061 0.3368 2.1729 9 14 6.0049 0.8802 1.3812 10 1 6.5004 2.2802 1.3808 11 1 6.3978 0.2170 2.6505 12 1 6.5966 0.1454 0.2344 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3671 15 8 -0.3416 2.6318 -0.4322 16 7 0.0783 3.2664 -2.5189 17 6 -1.1818 3.8527 -2.6384 18 6 -2.1455 3.8903 -1.6780 19 6 -3.2485 4.5678 -2.2050 20 7 -2.9643 4.9253 -3.4311 21 7 -1.6679 4.4870 -3.7295 22 6 -0.9629 4.6816 -4.9989 23 6 -1.2513 3.5011 -5.9286 24 1 -1.0078 2.5600 -5.4355 25 6 -0.4545 3.6435 -7.2482 26 6 -1.4943 3.1813 -8.3041 27 8 -2.7439 3.6972 -7.7972 28 6 -2.7272 3.5118 -6.3718 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8901 34 1 3.8292 -0.0610 2.9499 35 1 2.2719 2.1231 -1.9978 36 1 0.6979 3.2920 -3.2649 37 1 -2.0726 3.4676 -0.6868 38 1 -4.1767 4.7629 -1.6884 39 1 -1.3052 5.6046 -5.4668 40 1 0.1092 4.7443 -4.8132 41 1 -0.1635 4.6802 -7.4171 42 1 0.4187 2.9910 -7.2477 43 1 -1.5231 2.0933 -8.3611 44 1 -1.2700 3.6099 -9.2810 45 1 -3.1979 2.5624 -6.1161 46 1 -3.2551 4.3306 -5.8831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159715857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:40 Heat of formation + Delta-G solvation = -11.755249 kcal Electronic energy + Delta-G solvation = -27840.839286 eV Core-core repulsion = 23959.820609 eV Total energy + Delta-G solvation = -3881.018677 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.55363 -40.92870 -40.30186 -37.29179 -35.97059 -35.30411 -34.31069 -32.74500 -32.29347 -30.22872 -29.81699 -28.64925 -26.93834 -25.11541 -23.76106 -23.40820 -22.28576 -21.88169 -21.32924 -21.05662 -19.64288 -18.83963 -17.70479 -17.64525 -17.32194 -17.10318 -16.71785 -16.34308 -16.09012 -15.76241 -15.55841 -15.17370 -14.79595 -14.58053 -14.39827 -14.15137 -13.98207 -13.81919 -13.52480 -13.34473 -13.14955 -12.89345 -12.73054 -12.63827 -12.32431 -12.18293 -12.10677 -12.06301 -11.95738 -11.79571 -11.69244 -11.50519 -11.06798 -10.91930 -10.70660 -10.50786 -9.93941 -9.73688 -8.96930 -8.13840 -6.30782 0.83138 1.01118 1.48214 1.49181 1.56873 1.88433 1.96013 2.36731 2.44401 2.96220 3.16132 3.33837 3.35173 3.55680 3.65174 3.89202 4.16867 4.18120 4.25952 4.36184 4.44525 4.53595 4.55747 4.60955 4.66692 4.78006 4.78512 4.81334 4.84574 4.96137 5.04033 5.09310 5.11702 5.18488 5.30448 5.46955 5.53506 5.62256 5.71824 5.84994 5.86329 5.89706 6.01676 6.19062 6.24544 6.75344 6.77975 7.19054 7.37126 7.65814 8.91227 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016761 B = 0.002973 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.099271 B = 9414.709473 C =10268.455664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.299 3.701 4 H 0.003 0.997 5 C -0.548 4.548 6 H 0.074 0.926 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.264 1.264 13 N -0.708 5.708 14 C 0.701 3.299 15 O -0.593 6.593 16 N -0.650 5.650 17 C 0.332 3.668 18 C -0.313 4.313 19 C 0.063 3.937 20 N -0.311 5.311 21 N -0.384 5.384 22 C 0.135 3.865 23 C -0.136 4.136 24 H 0.083 0.917 25 C -0.137 4.137 26 C 0.037 3.963 27 O -0.402 6.402 28 C 0.054 3.946 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.027 0.973 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.265 0.735 35 H 0.403 0.597 36 H 0.419 0.581 37 H 0.148 0.852 38 H 0.209 0.791 39 H 0.109 0.891 40 H 0.116 0.884 41 H 0.097 0.903 42 H 0.107 0.893 43 H 0.063 0.937 44 H 0.111 0.889 45 H 0.044 0.956 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.294 6.279 -19.592 21.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.161 4.161 3 C 0.195 3.805 4 H 0.021 0.979 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.189 1.189 13 N -0.361 5.361 14 C 0.401 3.599 15 O -0.470 6.470 16 N -0.302 5.302 17 C 0.110 3.890 18 C -0.346 4.346 19 C -0.122 4.122 20 N -0.133 5.133 21 N -0.172 5.172 22 C 0.014 3.986 23 C -0.156 4.156 24 H 0.102 0.898 25 C -0.175 4.175 26 C -0.039 4.039 27 O -0.321 6.321 28 C -0.023 4.023 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.238 0.762 36 H 0.257 0.743 37 H 0.166 0.834 38 H 0.225 0.775 39 H 0.127 0.873 40 H 0.134 0.866 41 H 0.115 0.885 42 H 0.125 0.875 43 H 0.081 0.919 44 H 0.129 0.871 45 H 0.062 0.938 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.403 6.800 -19.802 21.894 hybrid contribution 1.657 -0.748 0.899 2.028 sum -4.746 6.052 -18.903 20.408 Atomic orbital electron populations 1.21649 0.97022 0.98903 1.00286 1.21814 0.93645 0.99236 1.01370 1.18299 0.93439 0.88782 0.79959 0.97919 1.21530 0.91289 1.39050 1.06761 0.90774 1.25718 1.03051 0.94429 0.95076 1.70038 1.37073 1.38208 1.09836 0.85459 0.79366 0.78373 0.77486 1.19751 1.21508 1.18880 1.45384 1.13488 1.58506 1.18735 1.15854 0.83288 0.78739 0.82065 1.90856 1.52177 1.64597 1.39409 1.41742 1.13949 1.58034 1.16494 1.17689 0.86457 0.95141 0.89756 1.21635 0.94859 1.15390 1.02700 1.24100 1.00004 0.96177 0.91925 1.77339 0.93764 1.24879 1.17364 1.48745 1.12185 1.45634 1.10661 1.22041 0.97154 0.99802 0.79560 1.22961 0.95955 0.99108 0.97536 0.89815 1.23209 0.98702 1.04597 0.90985 1.23836 0.82118 0.99058 0.98915 1.88867 1.39630 1.83198 1.20436 1.23155 0.96526 1.01261 0.81377 0.93963 0.94000 0.95359 0.93981 0.90925 0.92606 0.76165 0.74286 0.83415 0.77471 0.87263 0.86608 0.88492 0.87454 0.91869 0.87065 0.93814 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.27 8.51 71.98 0.61 -4.66 16 2 C -0.12 -5.68 5.45 30.59 0.17 -5.52 16 3 C 0.30 14.33 2.24 44.24 0.10 14.43 16 4 H 0.00 0.17 7.58 -2.39 -0.02 0.15 16 5 C -0.55 -27.23 8.73 25.60 0.22 -27.01 16 6 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 7 C 0.02 0.91 5.29 84.65 0.45 1.36 16 8 N -0.91 -50.40 11.29 21.45 0.24 -50.16 16 9 Si 0.97 40.24 29.54 68.60 2.03 42.27 16 10 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 11 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 13 N -0.71 -26.36 5.03 -461.41 -2.32 -28.68 16 14 C 0.70 25.77 7.10 179.05 1.27 27.04 16 15 O -0.59 -26.59 10.60 -3.99 -0.04 -26.63 16 16 N -0.65 -17.59 5.42 -322.31 -1.75 -19.33 16 17 C 0.33 9.61 7.66 131.31 1.01 10.61 16 18 C -0.31 -10.30 9.65 22.14 0.21 -10.09 16 19 C 0.06 1.72 12.01 85.21 1.02 2.74 16 20 N -0.31 -8.37 11.71 -57.09 -0.67 -9.04 16 21 N -0.38 -9.16 3.44 -344.99 -1.19 -10.34 16 22 C 0.13 2.05 5.34 86.38 0.46 2.51 16 23 C -0.14 -1.97 3.28 -9.80 -0.03 -2.00 16 24 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 25 C -0.14 -1.23 6.73 31.98 0.22 -1.02 16 26 C 0.04 0.46 7.72 72.75 0.56 1.02 16 27 O -0.40 -8.29 11.52 -148.98 -1.72 -10.01 16 28 C 0.05 1.07 7.23 72.35 0.52 1.60 16 29 H 0.04 1.78 5.64 -2.38 -0.01 1.76 16 30 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.03 1.33 7.84 -2.39 -0.02 1.31 16 32 H 0.04 1.83 8.14 -2.39 -0.02 1.82 16 33 H 0.07 3.85 5.95 -2.38 -0.01 3.83 16 34 H 0.26 13.96 8.31 -92.70 -0.77 13.19 16 35 H 0.40 12.07 8.55 -92.71 -0.79 11.27 16 36 H 0.42 7.70 7.98 -92.71 -0.74 6.96 16 37 H 0.15 5.76 5.82 -2.91 -0.02 5.74 16 38 H 0.21 4.16 8.06 -2.91 -0.02 4.14 16 39 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.12 1.15 7.50 -2.39 -0.02 1.14 16 41 H 0.10 0.64 7.87 -2.39 -0.02 0.63 16 42 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 45 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 46 H 0.08 1.92 6.79 -2.39 -0.02 1.91 16 Total: -1.00 -68.38 367.59 0.86 -67.52 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: -0.52 Total: 33.39 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 6.79 Total: 11.03 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -5.68 Total: -117.56 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -1.76 Total: -36.64 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -68.38 0.86 -67.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159715857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.760 kcal (2) G-P(sol) polarization free energy of solvation -68.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds