Wall clock time and date at job start Tue Mar 31 2020 12:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47100 * 2 1 4 4 H 1.09005 * 109.46776 * 304.99719 * 3 2 1 5 5 C 1.50698 * 109.46937 * 184.99831 * 3 2 1 6 6 H 1.08002 * 119.99342 * 239.99397 * 5 3 2 7 7 C 1.37868 * 120.00148 * 59.99946 * 5 3 2 8 8 N 1.31512 * 120.00394 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99906 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47246 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47244 * 120.00114 * 9 7 5 12 12 H 1.48507 * 109.47185 * 239.99721 * 9 7 5 13 13 N 1.46498 * 109.46999 * 64.99382 * 3 2 1 14 14 C 1.34775 * 120.00350 * 274.99951 * 13 3 2 15 15 O 1.21588 * 119.99880 * 0.02562 * 14 13 3 16 16 N 1.34779 * 120.00323 * 180.02562 * 14 13 3 17 17 C 1.39504 * 120.00223 * 179.97438 * 16 14 13 18 18 C 1.36102 * 126.20976 * 353.68616 * 17 16 14 19 19 C 1.39775 * 107.81904 * 180.02562 * 18 17 16 20 20 N 1.30844 * 108.32236 * 359.97438 * 19 18 17 21 21 N 1.35239 * 126.21480 * 173.70528 * 17 16 14 22 22 C 1.46502 * 126.04734 * 359.97438 * 21 17 16 23 23 C 1.53000 * 109.47096 * 94.73064 * 22 21 17 24 24 H 1.08999 * 110.43796 * 303.09298 * 23 22 21 25 25 C 1.54811 * 110.48410 * 180.54530 * 23 22 21 26 26 C 1.55228 * 101.98949 * 220.52213 * 25 23 22 27 27 O 1.44373 * 103.56372 * 36.88064 * 26 25 23 28 28 C 1.43742 * 106.97891 * 320.01304 * 27 26 25 29 29 H 1.08999 * 109.46486 * 60.00328 * 1 2 3 30 30 H 1.08995 * 109.47121 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47319 * 300.00697 * 1 2 3 32 32 H 1.09000 * 109.47575 * 239.99789 * 2 1 3 33 33 H 1.08994 * 109.46824 * 119.99335 * 2 1 3 34 34 H 0.96999 * 120.00703 * 180.02562 * 8 7 5 35 35 H 0.96999 * 119.99866 * 95.00535 * 13 3 2 36 36 H 0.97005 * 119.99398 * 0.02562 * 16 14 13 37 37 H 1.07994 * 126.09199 * 0.02562 * 18 17 16 38 38 H 1.08000 * 125.83680 * 179.97438 * 19 18 17 39 39 H 1.08994 * 109.47291 * 214.73583 * 22 21 17 40 40 H 1.09003 * 109.46756 * 334.73561 * 22 21 17 41 41 H 1.08995 * 110.91361 * 338.64686 * 25 23 22 42 42 H 1.09006 * 110.90568 * 102.24997 * 25 23 22 43 43 H 1.09004 * 110.51708 * 278.38745 * 26 25 23 44 44 H 1.08996 * 110.78092 * 155.50354 * 26 25 23 45 45 H 1.08998 * 109.88021 * 267.08878 * 28 27 26 46 46 H 1.09005 * 110.00506 * 146.00250 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1433 0.8784 -1.2278 8 7 3.4064 0.3366 -2.1727 9 14 6.0050 0.8813 -1.3815 10 1 6.5987 1.5474 -0.1945 11 1 6.4971 -0.5175 -1.4627 12 1 6.3991 1.6167 -2.6100 13 7 1.6523 2.0975 1.2517 14 6 0.4350 2.6645 1.3668 15 8 -0.3416 2.6319 0.4319 16 7 0.0786 3.2675 2.5182 17 6 -1.1812 3.8548 2.6371 18 6 -2.0982 3.9991 1.6418 19 6 -3.2191 4.6359 2.1820 20 7 -2.9903 4.8664 3.4494 21 7 -1.7129 4.3844 3.7622 22 6 -1.0673 4.4432 5.0760 23 6 -0.3735 5.7965 5.2431 24 1 0.3438 5.9585 4.4386 25 6 0.3291 5.8787 6.6202 26 6 0.0160 7.3354 7.0556 27 8 -1.3272 7.5519 6.5725 28 6 -1.4120 6.9345 5.2772 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.8294 -0.0619 -2.9493 35 1 2.2718 2.1233 1.9977 36 1 0.6983 3.2938 3.2640 37 1 -1.9808 3.6786 0.6172 38 1 -4.1200 4.8937 1.6449 39 1 -1.8188 4.3213 5.8559 40 1 -0.3296 3.6446 5.1542 41 1 -0.1017 5.1628 7.3201 42 1 1.4033 5.7233 6.5187 43 1 0.7099 8.0322 6.5854 44 1 0.0538 7.4313 8.1406 45 1 -1.1852 7.6666 4.5021 46 1 -2.4117 6.5286 5.1223 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159715992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:44 Heat of formation + Delta-G solvation = 8.838313 kcal Electronic energy + Delta-G solvation = -27766.992584 eV Core-core repulsion = 23886.866911 eV Total energy + Delta-G solvation = -3880.125673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.41872 -39.72902 -39.31127 -35.61785 -34.85880 -34.13641 -32.49367 -31.53909 -30.93947 -29.40200 -28.57478 -26.87275 -26.09213 -23.32329 -23.00536 -22.05347 -21.34548 -20.80566 -19.83071 -19.60085 -18.26316 -17.54270 -16.94914 -16.55011 -15.98624 -15.58707 -15.40315 -15.15244 -14.94411 -14.45715 -14.35600 -13.79397 -13.62501 -13.43586 -13.29639 -12.95813 -12.72728 -12.53438 -12.35760 -12.02683 -11.71072 -11.65304 -11.38439 -11.32731 -11.17068 -11.03458 -10.94318 -10.64536 -10.56109 -10.35897 -10.24331 -9.94679 -9.66511 -9.41344 -9.10875 -8.88596 -8.58516 -8.10269 -7.69400 -6.19603 -4.29417 1.98003 2.15438 3.07766 3.09399 3.18773 3.27446 3.29278 3.62566 3.80432 4.04185 4.23273 4.25351 4.34048 4.65438 4.73206 4.80863 4.83249 4.93299 5.11230 5.12407 5.26828 5.34041 5.35971 5.47143 5.59147 5.66411 5.76541 5.78497 6.20539 6.34638 6.37526 6.43068 6.55920 6.60187 6.86037 6.95722 7.03905 7.18860 7.27489 7.30392 7.38882 7.56956 7.73186 7.82898 7.94662 8.11062 8.61009 8.73213 9.10152 9.38463 10.85735 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015940 B = 0.003011 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.179160 B = 9297.699045 C =10587.238832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.287 3.713 4 H 0.052 0.948 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.714 5.714 14 C 0.700 3.300 15 O -0.558 6.558 16 N -0.672 5.672 17 C 0.339 3.661 18 C -0.283 4.283 19 C 0.062 3.938 20 N -0.306 5.306 21 N -0.396 5.396 22 C 0.144 3.856 23 C -0.142 4.142 24 H 0.088 0.912 25 C -0.148 4.148 26 C 0.046 3.954 27 O -0.378 6.378 28 C 0.052 3.948 29 H 0.051 0.949 30 H 0.022 0.978 31 H 0.037 0.963 32 H 0.100 0.900 33 H 0.030 0.970 34 H 0.265 0.735 35 H 0.386 0.614 36 H 0.399 0.601 37 H 0.175 0.825 38 H 0.182 0.818 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.094 0.906 45 H 0.056 0.944 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.802 8.591 16.217 19.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 C 0.186 3.814 4 H 0.070 0.930 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.366 5.366 14 C 0.399 3.601 15 O -0.433 6.433 16 N -0.322 5.322 17 C 0.118 3.882 18 C -0.315 4.315 19 C -0.124 4.124 20 N -0.128 5.128 21 N -0.184 5.184 22 C 0.022 3.978 23 C -0.162 4.162 24 H 0.106 0.894 25 C -0.186 4.186 26 C -0.031 4.031 27 O -0.297 6.297 28 C -0.025 4.025 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.118 0.882 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.218 0.782 36 H 0.233 0.767 37 H 0.192 0.808 38 H 0.199 0.801 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.078 0.922 44 H 0.112 0.888 45 H 0.075 0.925 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.976 8.975 16.363 19.923 hybrid contribution 2.274 -0.539 -0.202 2.346 sum -4.702 8.435 16.160 18.826 Atomic orbital electron populations 1.21821 0.98162 0.98064 1.01307 1.21970 0.92768 0.99746 1.02315 1.18784 0.94121 0.88918 0.79614 0.92997 1.21228 0.90531 1.39267 1.06415 0.92046 1.24867 0.98658 0.94733 0.95332 1.69894 1.35104 1.37379 1.09330 0.86392 0.84726 0.77809 0.78144 1.19798 1.20839 1.20828 1.45831 1.12769 1.58461 1.19506 1.15845 0.83893 0.78792 0.81540 1.90855 1.51303 1.63534 1.37651 1.42263 1.13599 1.59119 1.17262 1.17746 0.86653 0.95644 0.88184 1.21682 0.94052 1.14005 1.01797 1.23747 0.99381 0.97522 0.91711 1.77334 0.94504 1.24320 1.16619 1.48529 1.13139 1.49798 1.06949 1.21634 0.96871 0.96945 0.82387 1.23024 0.98245 0.95892 0.99055 0.89359 1.23203 1.01478 0.98403 0.95532 1.23577 0.84610 0.94714 1.00181 1.88890 1.29742 1.77756 1.33337 1.23282 1.00803 0.93183 0.85204 0.92993 0.95900 0.94359 0.88151 0.95080 0.92496 0.78233 0.76726 0.80793 0.80065 0.88254 0.89304 0.89904 0.89561 0.92169 0.88817 0.92549 0.87888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.51 37.16 0.32 -2.62 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.14 16 3 C 0.29 6.80 2.24 -69.08 -0.15 6.64 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 5 C -0.54 -13.42 8.73 -34.44 -0.30 -13.72 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.76 11.29 55.43 0.63 -23.14 16 9 Si 0.90 19.85 29.54 -169.99 -5.02 14.83 16 10 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 N -0.71 -13.57 5.03 -59.81 -0.30 -13.87 16 14 C 0.70 12.97 7.09 -86.92 -0.62 12.36 16 15 O -0.56 -12.17 10.64 5.29 0.06 -12.11 16 16 N -0.67 -9.60 5.40 -15.85 -0.09 -9.68 16 17 C 0.34 5.07 7.65 -153.15 -1.17 3.90 16 18 C -0.28 -4.59 9.64 -39.77 -0.38 -4.97 16 19 C 0.06 0.85 12.01 -17.40 -0.21 0.64 16 20 N -0.31 -4.25 11.30 30.61 0.35 -3.91 16 21 N -0.40 -5.04 3.43 -60.39 -0.21 -5.25 16 22 C 0.14 1.30 5.44 -4.04 -0.02 1.27 16 23 C -0.14 -1.20 3.30 -89.09 -0.29 -1.49 16 24 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 25 C -0.15 -0.93 6.73 -24.60 -0.17 -1.09 16 26 C 0.05 0.34 7.72 38.34 0.30 0.64 16 27 O -0.38 -4.16 11.52 -35.23 -0.41 -4.57 16 28 C 0.05 0.55 7.17 37.73 0.27 0.82 16 29 H 0.05 1.19 7.84 -51.93 -0.41 0.79 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.04 0.81 5.64 -51.93 -0.29 0.52 16 32 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 35 H 0.39 6.18 8.55 -40.82 -0.35 5.83 16 36 H 0.40 4.25 7.94 -40.82 -0.32 3.92 16 37 H 0.17 3.21 5.88 -52.49 -0.31 2.90 16 38 H 0.18 1.88 8.06 -52.49 -0.42 1.46 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.09 0.63 7.39 -51.93 -0.38 0.24 16 41 H 0.08 0.45 7.87 -51.93 -0.41 0.04 16 42 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.10 1.22 6.40 -51.93 -0.33 0.89 16 LS Contribution 366.73 15.07 5.53 5.53 Total: -1.00 -30.59 366.73 -9.00 -39.58 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -6.86 Total: 11.70 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -2.67 Total: 0.88 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.38 Total: -55.84 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.35 Total: -16.68 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.59 -9.00 -39.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159715992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.421 kcal (2) G-P(sol) polarization free energy of solvation -30.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds