Wall clock time and date at job start Tue Mar 31 2020 12:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47100 * 2 1 4 4 H 1.09005 * 109.46776 * 304.99719 * 3 2 1 5 5 C 1.50698 * 109.46937 * 184.99831 * 3 2 1 6 6 H 1.08002 * 119.99342 * 239.99397 * 5 3 2 7 7 C 1.37868 * 120.00148 * 59.99946 * 5 3 2 8 8 N 1.31512 * 120.00394 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99906 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47246 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47244 * 120.00114 * 9 7 5 12 12 H 1.48507 * 109.47185 * 239.99721 * 9 7 5 13 13 N 1.46498 * 109.46999 * 64.99382 * 3 2 1 14 14 C 1.34775 * 120.00350 * 274.99951 * 13 3 2 15 15 O 1.21588 * 119.99880 * 0.02562 * 14 13 3 16 16 N 1.34779 * 120.00323 * 180.02562 * 14 13 3 17 17 C 1.39504 * 120.00223 * 179.97438 * 16 14 13 18 18 C 1.36102 * 126.20976 * 353.68616 * 17 16 14 19 19 C 1.39775 * 107.81904 * 180.02562 * 18 17 16 20 20 N 1.30844 * 108.32236 * 359.97438 * 19 18 17 21 21 N 1.35239 * 126.21480 * 173.70528 * 17 16 14 22 22 C 1.46502 * 126.04734 * 359.97438 * 21 17 16 23 23 C 1.53000 * 109.47096 * 94.73064 * 22 21 17 24 24 H 1.08999 * 110.43796 * 303.09298 * 23 22 21 25 25 C 1.54811 * 110.48410 * 180.54530 * 23 22 21 26 26 C 1.55228 * 101.98949 * 220.52213 * 25 23 22 27 27 O 1.44373 * 103.56372 * 36.88064 * 26 25 23 28 28 C 1.43742 * 106.97891 * 320.01304 * 27 26 25 29 29 H 1.08999 * 109.46486 * 60.00328 * 1 2 3 30 30 H 1.08995 * 109.47121 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47319 * 300.00697 * 1 2 3 32 32 H 1.09000 * 109.47575 * 239.99789 * 2 1 3 33 33 H 1.08994 * 109.46824 * 119.99335 * 2 1 3 34 34 H 0.96999 * 120.00703 * 180.02562 * 8 7 5 35 35 H 0.96999 * 119.99866 * 95.00535 * 13 3 2 36 36 H 0.97005 * 119.99398 * 0.02562 * 16 14 13 37 37 H 1.07994 * 126.09199 * 0.02562 * 18 17 16 38 38 H 1.08000 * 125.83680 * 179.97438 * 19 18 17 39 39 H 1.08994 * 109.47291 * 214.73583 * 22 21 17 40 40 H 1.09003 * 109.46756 * 334.73561 * 22 21 17 41 41 H 1.08995 * 110.91361 * 338.64686 * 25 23 22 42 42 H 1.09006 * 110.90568 * 102.24997 * 25 23 22 43 43 H 1.09004 * 110.51708 * 278.38745 * 26 25 23 44 44 H 1.08996 * 110.78092 * 155.50354 * 26 25 23 45 45 H 1.08998 * 109.88021 * 267.08878 * 28 27 26 46 46 H 1.09005 * 110.00506 * 146.00250 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1433 0.8784 -1.2278 8 7 3.4064 0.3366 -2.1727 9 14 6.0050 0.8813 -1.3815 10 1 6.5987 1.5474 -0.1945 11 1 6.4971 -0.5175 -1.4627 12 1 6.3991 1.6167 -2.6100 13 7 1.6523 2.0975 1.2517 14 6 0.4350 2.6645 1.3668 15 8 -0.3416 2.6319 0.4319 16 7 0.0786 3.2675 2.5182 17 6 -1.1812 3.8548 2.6371 18 6 -2.0982 3.9991 1.6418 19 6 -3.2191 4.6359 2.1820 20 7 -2.9903 4.8664 3.4494 21 7 -1.7129 4.3844 3.7622 22 6 -1.0673 4.4432 5.0760 23 6 -0.3735 5.7965 5.2431 24 1 0.3438 5.9585 4.4386 25 6 0.3291 5.8787 6.6202 26 6 0.0160 7.3354 7.0556 27 8 -1.3272 7.5519 6.5725 28 6 -1.4120 6.9345 5.2772 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.8294 -0.0619 -2.9493 35 1 2.2718 2.1233 1.9977 36 1 0.6983 3.2938 3.2640 37 1 -1.9808 3.6786 0.6172 38 1 -4.1200 4.8937 1.6449 39 1 -1.8188 4.3213 5.8559 40 1 -0.3296 3.6446 5.1542 41 1 -0.1017 5.1628 7.3201 42 1 1.4033 5.7233 6.5187 43 1 0.7099 8.0322 6.5854 44 1 0.0538 7.4313 8.1406 45 1 -1.1852 7.6666 4.5021 46 1 -2.4117 6.5286 5.1223 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159715992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:43 Heat of formation + Delta-G solvation = -11.401557 kcal Electronic energy + Delta-G solvation = -27767.870251 eV Core-core repulsion = 23886.866911 eV Total energy + Delta-G solvation = -3881.003340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.55483 -40.93188 -40.29105 -37.29246 -35.96085 -35.30977 -34.31206 -32.74756 -32.29224 -30.23867 -29.79642 -28.65166 -26.94775 -25.11851 -23.75513 -23.40908 -22.29260 -21.85775 -21.32602 -21.05951 -19.64525 -18.83697 -17.73906 -17.63312 -17.33091 -17.10361 -16.67711 -16.33026 -16.08251 -15.81582 -15.52579 -15.17061 -14.79342 -14.59369 -14.39416 -14.21291 -13.92146 -13.81346 -13.54121 -13.35798 -13.16386 -12.85096 -12.71026 -12.69901 -12.31699 -12.15016 -12.09135 -12.04750 -11.95376 -11.80599 -11.67634 -11.50856 -11.05735 -10.93049 -10.69319 -10.52560 -9.94378 -9.72969 -8.97451 -8.14249 -6.30945 0.83080 1.00815 1.46305 1.48523 1.58946 1.88139 1.95958 2.36466 2.44101 2.97223 3.15998 3.34136 3.36523 3.54792 3.64920 3.90219 4.17571 4.18470 4.26229 4.36267 4.45419 4.53576 4.55785 4.60956 4.66572 4.78518 4.79073 4.82365 4.85629 4.96315 5.04294 5.09286 5.12263 5.18356 5.30453 5.46895 5.53478 5.62605 5.71717 5.84835 5.87328 5.89353 6.01511 6.19015 6.24183 6.75335 6.78056 7.19053 7.37062 7.65747 8.91271 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015940 B = 0.003011 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.179160 B = 9297.699045 C =10587.238832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.122 4.122 3 C 0.298 3.702 4 H 0.003 0.997 5 C -0.545 4.545 6 H 0.074 0.926 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.259 1.259 11 H -0.281 1.281 12 H -0.287 1.287 13 N -0.708 5.708 14 C 0.701 3.299 15 O -0.593 6.593 16 N -0.651 5.651 17 C 0.331 3.669 18 C -0.312 4.312 19 C 0.063 3.937 20 N -0.311 5.311 21 N -0.384 5.384 22 C 0.135 3.865 23 C -0.136 4.136 24 H 0.085 0.915 25 C -0.137 4.137 26 C 0.037 3.963 27 O -0.402 6.402 28 C 0.052 3.948 29 H 0.027 0.973 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.042 0.958 34 H 0.264 0.736 35 H 0.403 0.597 36 H 0.419 0.581 37 H 0.147 0.853 38 H 0.209 0.791 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.096 0.904 42 H 0.107 0.893 43 H 0.063 0.937 44 H 0.111 0.889 45 H 0.043 0.957 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.475 8.650 18.988 21.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.161 4.161 3 C 0.194 3.806 4 H 0.021 0.979 5 C -0.584 4.584 6 H 0.092 0.908 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.183 1.183 11 H -0.207 1.207 12 H -0.213 1.213 13 N -0.361 5.361 14 C 0.401 3.599 15 O -0.471 6.471 16 N -0.303 5.303 17 C 0.109 3.891 18 C -0.344 4.344 19 C -0.122 4.122 20 N -0.133 5.133 21 N -0.172 5.172 22 C 0.015 3.985 23 C -0.155 4.155 24 H 0.103 0.897 25 C -0.175 4.175 26 C -0.039 4.039 27 O -0.322 6.322 28 C -0.025 4.025 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.238 0.762 36 H 0.257 0.743 37 H 0.165 0.835 38 H 0.225 0.775 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.114 0.886 42 H 0.126 0.874 43 H 0.081 0.919 44 H 0.129 0.871 45 H 0.062 0.938 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.637 9.065 19.232 21.996 hybrid contribution 1.791 -0.473 -1.011 2.110 sum -3.846 8.592 18.221 20.509 Atomic orbital electron populations 1.21647 0.97023 0.98904 1.00264 1.21816 0.93642 0.99240 1.01384 1.18312 0.93477 0.88789 0.79972 0.97902 1.21580 0.91261 1.38833 1.06690 0.90774 1.25715 1.03037 0.94474 0.95100 1.70045 1.36926 1.38318 1.09897 0.85355 0.79419 0.77709 0.78169 1.18327 1.20653 1.21309 1.45382 1.13485 1.58509 1.18738 1.15855 0.83288 0.78683 0.82122 1.90865 1.52222 1.64604 1.39370 1.41745 1.13866 1.58051 1.16614 1.17681 0.86531 0.95933 0.88919 1.21594 0.95890 1.15689 1.01246 1.24102 0.99683 0.96780 0.91622 1.77320 0.95176 1.24206 1.16592 1.48746 1.12550 1.48463 1.07452 1.22039 0.97658 0.98216 0.80610 1.22953 0.97553 0.94545 1.00490 0.89698 1.23208 1.02574 0.97730 0.93981 1.23835 0.83112 0.95745 1.01253 1.88865 1.31892 1.78090 1.33340 1.23191 1.00636 0.93642 0.85006 0.95375 0.93982 0.93998 0.90939 0.93941 0.92623 0.76161 0.74269 0.83544 0.77461 0.87420 0.86565 0.88563 0.87439 0.91858 0.87112 0.93843 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.27 8.51 71.98 0.61 -4.65 16 2 C -0.12 -5.69 5.45 30.60 0.17 -5.53 16 3 C 0.30 14.29 2.24 44.25 0.10 14.39 16 4 H 0.00 0.18 7.58 -2.38 -0.02 0.16 16 5 C -0.55 -27.08 8.73 25.60 0.22 -26.86 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.02 0.88 5.29 84.65 0.45 1.33 16 8 N -0.91 -50.38 11.29 21.44 0.24 -50.14 16 9 Si 0.97 40.29 29.54 68.60 2.03 42.32 16 10 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 11 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 12 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 13 N -0.71 -26.37 5.03 -461.40 -2.32 -28.69 16 14 C 0.70 25.78 7.09 179.05 1.27 27.05 16 15 O -0.59 -26.62 10.64 -3.99 -0.04 -26.66 16 16 N -0.65 -17.59 5.40 -322.31 -1.74 -19.33 16 17 C 0.33 9.59 7.65 131.31 1.00 10.60 16 18 C -0.31 -10.23 9.64 22.14 0.21 -10.01 16 19 C 0.06 1.72 12.01 85.21 1.02 2.74 16 20 N -0.31 -8.33 11.30 -57.08 -0.64 -8.97 16 21 N -0.38 -9.14 3.43 -344.98 -1.18 -10.33 16 22 C 0.14 2.05 5.44 86.38 0.47 2.52 16 23 C -0.14 -1.96 3.30 -9.80 -0.03 -1.99 16 24 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 25 C -0.14 -1.24 6.73 31.98 0.22 -1.02 16 26 C 0.04 0.46 7.72 72.75 0.56 1.02 16 27 O -0.40 -8.38 11.52 -148.98 -1.72 -10.09 16 28 C 0.05 1.05 7.17 72.35 0.52 1.57 16 29 H 0.03 1.32 7.84 -2.39 -0.02 1.30 16 30 H 0.04 1.62 8.14 -2.39 -0.02 1.61 16 31 H 0.04 1.77 5.64 -2.39 -0.01 1.75 16 32 H 0.07 3.84 5.95 -2.39 -0.01 3.83 16 33 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 35 H 0.40 12.08 8.55 -92.71 -0.79 11.28 16 36 H 0.42 7.69 7.94 -92.70 -0.74 6.95 16 37 H 0.15 5.70 5.88 -2.91 -0.02 5.68 16 38 H 0.21 4.15 8.06 -2.91 -0.02 4.13 16 39 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.12 1.16 7.39 -2.39 -0.02 1.14 16 41 H 0.10 0.65 7.87 -2.39 -0.02 0.63 16 42 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 43 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 44 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.09 2.01 6.40 -2.38 -0.02 2.00 16 Total: -1.00 -68.47 366.73 0.90 -67.56 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: -0.51 Total: 33.18 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 6.80 Total: 11.15 kcal Atomic # 7 Polarization: -111.81 SS G_CDS: -5.65 Total: -117.45 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -1.76 Total: -36.76 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Total: -68.47 0.90 -67.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159715992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.163 kcal (2) G-P(sol) polarization free energy of solvation -68.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds