Wall clock time and date at job start Tue Mar 31 2020 12:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46725 * 2 1 4 4 H 1.08998 * 109.47199 * 55.00719 * 3 2 1 5 5 C 1.50708 * 109.46568 * 175.00080 * 3 2 1 6 6 H 1.07998 * 119.99784 * 120.00547 * 5 3 2 7 7 C 1.37874 * 119.99979 * 299.99756 * 5 3 2 8 8 N 1.31508 * 120.00197 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99612 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47476 * 60.00195 * 9 7 5 11 11 H 1.48505 * 109.46986 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47028 * 299.99988 * 9 7 5 13 13 N 1.46493 * 109.47671 * 294.99956 * 3 2 1 14 14 C 1.34777 * 119.99598 * 84.99776 * 13 3 2 15 15 O 1.21587 * 120.00259 * 0.02562 * 14 13 3 16 16 N 1.34779 * 120.00019 * 180.02562 * 14 13 3 17 17 C 1.39501 * 120.00141 * 180.02562 * 16 14 13 18 18 C 1.36097 * 126.21499 * 0.02562 * 17 16 14 19 19 C 1.39767 * 107.82754 * 179.75904 * 18 17 16 20 20 N 1.30846 * 108.31920 * 0.24261 * 19 18 17 21 21 N 1.35254 * 126.21420 * 180.20246 * 17 16 14 22 22 C 1.46498 * 126.04662 * 359.97438 * 21 17 16 23 23 C 1.52998 * 109.47407 * 270.26812 * 22 21 17 24 24 H 1.09001 * 110.45884 * 52.39113 * 23 22 21 25 25 C 1.54509 * 110.51251 * 175.00171 * 23 22 21 26 26 C 1.54479 * 104.06383 * 118.64431 * 25 23 22 27 27 O 1.44430 * 104.80228 * 23.97847 * 26 25 23 28 28 C 1.44426 * 105.27503 * 319.48582 * 27 26 25 29 29 H 1.08995 * 109.47474 * 59.99881 * 1 2 3 30 30 H 1.09002 * 109.46981 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46825 * 299.99586 * 1 2 3 32 32 H 1.09002 * 109.47225 * 240.00325 * 2 1 3 33 33 H 1.08995 * 109.47474 * 120.00119 * 2 1 3 34 34 H 0.97003 * 119.99693 * 179.97438 * 8 7 5 35 35 H 0.96998 * 120.00171 * 265.00347 * 13 3 2 36 36 H 0.97004 * 120.00191 * 0.02562 * 16 14 13 37 37 H 1.08002 * 126.08955 * 0.03073 * 18 17 16 38 38 H 1.07996 * 125.84338 * 180.20928 * 19 18 17 39 39 H 1.09003 * 109.46870 * 30.26305 * 22 21 17 40 40 H 1.08992 * 109.47239 * 150.26516 * 22 21 17 41 41 H 1.09006 * 110.50371 * 237.28503 * 25 23 22 42 42 H 1.08996 * 110.51090 * 359.85831 * 25 23 22 43 43 H 1.09004 * 110.37062 * 142.80737 * 26 25 23 44 44 H 1.08999 * 110.37291 * 265.14624 * 26 25 23 45 45 H 1.09002 * 110.37400 * 281.68590 * 28 27 26 46 46 H 1.08995 * 110.36875 * 159.34218 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4063 0.3367 2.1728 9 14 6.0049 0.8813 1.3817 10 1 6.4995 2.2815 1.3820 11 1 6.3979 0.2167 2.6502 12 1 6.5975 0.1473 0.2347 13 7 1.6524 2.0976 -1.2517 14 6 0.4351 2.6644 -1.3668 15 8 -0.3413 2.6325 -0.4316 16 7 0.0782 3.2666 -2.5185 17 6 -1.1816 3.8538 -2.6375 18 6 -2.1444 3.8930 -1.6764 19 6 -3.2451 4.5762 -2.2010 20 7 -2.9624 4.9304 -3.4285 21 7 -1.6692 4.4846 -3.7300 22 6 -0.9668 4.6738 -5.0016 23 6 -0.1807 5.9857 -4.9598 24 1 0.4531 6.0221 -4.0737 25 6 0.6688 6.1489 -6.2400 26 6 0.1199 7.4367 -6.8932 27 8 -0.4700 8.1801 -5.8044 28 6 -1.1425 7.1942 -4.9909 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8294 -0.0618 2.9494 35 1 2.2719 2.1233 -1.9977 36 1 0.6974 3.2918 -3.2648 37 1 -2.0696 3.4748 -0.6835 38 1 -4.1708 4.7769 -1.6823 39 1 -0.2795 3.8435 -5.1640 40 1 -1.6913 4.7101 -5.8150 41 1 1.7223 6.2683 -5.9866 42 1 0.5307 5.2938 -6.9016 43 1 0.9303 8.0072 -7.3470 44 1 -0.6364 7.1913 -7.6388 45 1 -2.0923 6.9116 -5.4448 46 1 -1.3017 7.5785 -3.9834 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159716128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:47 Heat of formation + Delta-G solvation = 7.910603 kcal Electronic energy + Delta-G solvation = -27800.681034 eV Core-core repulsion = 23920.515132 eV Total energy + Delta-G solvation = -3880.165902 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.40806 -39.73809 -39.32070 -35.61166 -34.88618 -34.12986 -32.48656 -31.51083 -30.93110 -29.38070 -28.58730 -26.86325 -26.02257 -23.35513 -23.15390 -22.02952 -21.28297 -20.77948 -19.87112 -19.59906 -18.33252 -17.63279 -16.79386 -16.20140 -15.96369 -15.64648 -15.51593 -15.21003 -14.88899 -14.60701 -14.37281 -13.80407 -13.65591 -13.49477 -13.23555 -12.97734 -12.71214 -12.52785 -12.34878 -12.03852 -11.68966 -11.65127 -11.37151 -11.30825 -11.07794 -11.04865 -10.90504 -10.64103 -10.56961 -10.37062 -10.22498 -10.10669 -9.66056 -9.39314 -9.11654 -8.88645 -8.57157 -8.10280 -7.68341 -6.18486 -4.28461 1.97698 2.16158 3.08689 3.09536 3.21274 3.27470 3.28652 3.62616 3.81806 4.05040 4.25717 4.27453 4.40919 4.57908 4.72065 4.75310 4.87769 4.94218 5.08090 5.13322 5.23163 5.29105 5.36212 5.52744 5.59835 5.63803 5.70501 5.79615 6.20605 6.34926 6.37853 6.43552 6.45916 6.60627 6.86531 6.95867 7.04354 7.19244 7.27875 7.31191 7.39828 7.57370 7.73815 7.83572 7.95197 8.11865 8.61535 8.73748 9.10769 9.39253 10.86762 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014913 B = 0.003116 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.046160 B = 8984.282998 C =10380.530770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.288 3.712 4 H 0.052 0.948 5 C -0.537 4.537 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.714 5.714 14 C 0.700 3.300 15 O -0.558 6.558 16 N -0.671 5.671 17 C 0.339 3.661 18 C -0.285 4.285 19 C 0.062 3.938 20 N -0.306 5.306 21 N -0.396 5.396 22 C 0.143 3.857 23 C -0.143 4.143 24 H 0.089 0.911 25 C -0.149 4.149 26 C 0.044 3.956 27 O -0.377 6.377 28 C 0.059 3.941 29 H 0.038 0.962 30 H 0.022 0.978 31 H 0.051 0.949 32 H 0.030 0.970 33 H 0.100 0.900 34 H 0.266 0.734 35 H 0.386 0.614 36 H 0.399 0.601 37 H 0.176 0.824 38 H 0.182 0.818 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.645 8.175 -16.720 19.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 C 0.186 3.814 4 H 0.070 0.930 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.366 5.366 14 C 0.399 3.601 15 O -0.433 6.433 16 N -0.322 5.322 17 C 0.118 3.882 18 C -0.317 4.317 19 C -0.124 4.124 20 N -0.128 5.128 21 N -0.184 5.184 22 C 0.021 3.979 23 C -0.163 4.163 24 H 0.108 0.892 25 C -0.187 4.187 26 C -0.033 4.033 27 O -0.295 6.295 28 C -0.018 4.018 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.218 0.782 36 H 0.233 0.767 37 H 0.193 0.807 38 H 0.199 0.801 39 H 0.107 0.893 40 H 0.117 0.883 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.110 0.890 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.589 8.786 -16.685 20.326 hybrid contribution 2.025 -0.732 -0.037 2.153 sum -5.564 8.054 -16.721 19.376 Atomic orbital electron populations 1.21823 0.98169 0.98067 1.01308 1.21970 0.92765 0.99748 1.02316 1.18771 0.94082 0.88909 0.79610 0.93005 1.21158 0.90534 1.39458 1.06447 0.92149 1.24862 0.98645 0.94715 0.95315 1.69876 1.35287 1.37241 1.09318 0.86503 0.84721 0.78331 0.77507 1.20173 1.21070 1.20181 1.45828 1.12771 1.58442 1.19509 1.15841 0.83893 0.78827 0.81490 1.90845 1.51300 1.63525 1.37678 1.42263 1.13739 1.59061 1.17125 1.17752 0.86623 0.94785 0.89015 1.21722 0.93083 1.13864 1.03026 1.23746 0.99590 0.96922 0.92153 1.77374 0.93358 1.24634 1.17404 1.48512 1.12638 1.46926 1.10365 1.21648 0.95385 0.97049 0.83780 1.23038 0.97678 0.95636 0.99953 0.89212 1.22964 1.00681 0.99048 0.96003 1.23408 0.97472 0.92088 0.90289 1.89152 1.71073 1.30857 1.38453 1.23413 0.94665 0.87291 0.96404 0.94339 0.95898 0.92994 0.95079 0.88155 0.92384 0.78231 0.76726 0.80680 0.80093 0.89342 0.88289 0.89912 0.89965 0.88996 0.92171 0.91371 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.51 37.16 0.32 -2.62 16 2 C -0.13 -3.00 5.45 -26.73 -0.15 -3.14 16 3 C 0.29 6.84 2.24 -69.08 -0.15 6.68 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.51 8.73 -34.44 -0.30 -13.82 16 6 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -23.84 11.29 55.43 0.63 -23.21 16 9 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 10 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 13 N -0.71 -13.63 5.03 -59.81 -0.30 -13.93 16 14 C 0.70 13.03 7.10 -86.92 -0.62 12.41 16 15 O -0.56 -12.19 10.60 5.29 0.06 -12.13 16 16 N -0.67 -9.64 5.42 -15.84 -0.09 -9.72 16 17 C 0.34 5.07 7.66 -153.14 -1.17 3.90 16 18 C -0.28 -4.62 9.65 -39.78 -0.38 -5.01 16 19 C 0.06 0.84 12.01 -17.40 -0.21 0.64 16 20 N -0.31 -4.21 12.56 30.60 0.38 -3.83 16 21 N -0.40 -4.98 3.51 -60.39 -0.21 -5.20 16 22 C 0.14 1.24 5.40 -4.04 -0.02 1.22 16 23 C -0.14 -1.23 3.35 -89.05 -0.30 -1.53 16 24 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 25 C -0.15 -0.95 6.74 -25.16 -0.17 -1.12 16 26 C 0.04 0.33 7.63 37.93 0.29 0.62 16 27 O -0.38 -4.18 11.65 -35.23 -0.41 -4.59 16 28 C 0.06 0.60 7.08 37.94 0.27 0.87 16 29 H 0.04 0.81 5.64 -51.93 -0.29 0.52 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 34 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.39 6.22 8.55 -40.82 -0.35 5.87 16 36 H 0.40 4.29 7.99 -40.82 -0.33 3.96 16 37 H 0.18 3.25 5.82 -52.49 -0.31 2.94 16 38 H 0.18 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.09 0.60 7.51 -51.93 -0.39 0.21 16 40 H 0.10 0.76 7.96 -51.93 -0.41 0.35 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.37 7.73 -51.93 -0.40 -0.03 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.69 7.74 -51.93 -0.40 0.29 16 46 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 369.20 15.07 5.56 5.56 Total: -1.00 -30.70 369.20 -9.01 -39.71 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -6.91 Total: 11.64 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -2.69 Total: 0.78 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 0.41 Total: -55.88 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.35 Total: -16.72 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.70 -9.01 -39.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159716128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.620 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds