Wall clock time and date at job start Tue Mar 31 2020 12:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46725 * 2 1 4 4 H 1.08998 * 109.47199 * 55.00719 * 3 2 1 5 5 C 1.50708 * 109.46568 * 175.00080 * 3 2 1 6 6 H 1.07998 * 119.99784 * 120.00547 * 5 3 2 7 7 C 1.37874 * 119.99979 * 299.99756 * 5 3 2 8 8 N 1.31508 * 120.00197 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99612 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47476 * 60.00195 * 9 7 5 11 11 H 1.48505 * 109.46986 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47028 * 299.99988 * 9 7 5 13 13 N 1.46493 * 109.47671 * 294.99956 * 3 2 1 14 14 C 1.34777 * 119.99598 * 84.99776 * 13 3 2 15 15 O 1.21587 * 120.00259 * 0.02562 * 14 13 3 16 16 N 1.34779 * 120.00019 * 180.02562 * 14 13 3 17 17 C 1.39501 * 120.00141 * 180.02562 * 16 14 13 18 18 C 1.36097 * 126.21499 * 0.02562 * 17 16 14 19 19 C 1.39767 * 107.82754 * 179.75904 * 18 17 16 20 20 N 1.30846 * 108.31920 * 0.24261 * 19 18 17 21 21 N 1.35254 * 126.21420 * 180.20246 * 17 16 14 22 22 C 1.46498 * 126.04662 * 359.97438 * 21 17 16 23 23 C 1.52998 * 109.47407 * 270.26812 * 22 21 17 24 24 H 1.09001 * 110.45884 * 52.39113 * 23 22 21 25 25 C 1.54509 * 110.51251 * 175.00171 * 23 22 21 26 26 C 1.54479 * 104.06383 * 118.64431 * 25 23 22 27 27 O 1.44430 * 104.80228 * 23.97847 * 26 25 23 28 28 C 1.44426 * 105.27503 * 319.48582 * 27 26 25 29 29 H 1.08995 * 109.47474 * 59.99881 * 1 2 3 30 30 H 1.09002 * 109.46981 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46825 * 299.99586 * 1 2 3 32 32 H 1.09002 * 109.47225 * 240.00325 * 2 1 3 33 33 H 1.08995 * 109.47474 * 120.00119 * 2 1 3 34 34 H 0.97003 * 119.99693 * 179.97438 * 8 7 5 35 35 H 0.96998 * 120.00171 * 265.00347 * 13 3 2 36 36 H 0.97004 * 120.00191 * 0.02562 * 16 14 13 37 37 H 1.08002 * 126.08955 * 0.03073 * 18 17 16 38 38 H 1.07996 * 125.84338 * 180.20928 * 19 18 17 39 39 H 1.09003 * 109.46870 * 30.26305 * 22 21 17 40 40 H 1.08992 * 109.47239 * 150.26516 * 22 21 17 41 41 H 1.09006 * 110.50371 * 237.28503 * 25 23 22 42 42 H 1.08996 * 110.51090 * 359.85831 * 25 23 22 43 43 H 1.09004 * 110.37062 * 142.80737 * 26 25 23 44 44 H 1.08999 * 110.37291 * 265.14624 * 26 25 23 45 45 H 1.09002 * 110.37400 * 281.68590 * 28 27 26 46 46 H 1.08995 * 110.36875 * 159.34218 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4063 0.3367 2.1728 9 14 6.0049 0.8813 1.3817 10 1 6.4995 2.2815 1.3820 11 1 6.3979 0.2167 2.6502 12 1 6.5975 0.1473 0.2347 13 7 1.6524 2.0976 -1.2517 14 6 0.4351 2.6644 -1.3668 15 8 -0.3413 2.6325 -0.4316 16 7 0.0782 3.2666 -2.5185 17 6 -1.1816 3.8538 -2.6375 18 6 -2.1444 3.8930 -1.6764 19 6 -3.2451 4.5762 -2.2010 20 7 -2.9624 4.9304 -3.4285 21 7 -1.6692 4.4846 -3.7300 22 6 -0.9668 4.6738 -5.0016 23 6 -0.1807 5.9857 -4.9598 24 1 0.4531 6.0221 -4.0737 25 6 0.6688 6.1489 -6.2400 26 6 0.1199 7.4367 -6.8932 27 8 -0.4700 8.1801 -5.8044 28 6 -1.1425 7.1942 -4.9909 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8294 -0.0618 2.9494 35 1 2.2719 2.1233 -1.9977 36 1 0.6974 3.2918 -3.2648 37 1 -2.0696 3.4748 -0.6835 38 1 -4.1708 4.7769 -1.6823 39 1 -0.2795 3.8435 -5.1640 40 1 -1.6913 4.7101 -5.8150 41 1 1.7223 6.2683 -5.9866 42 1 0.5307 5.2938 -6.9016 43 1 0.9303 8.0072 -7.3470 44 1 -0.6364 7.1913 -7.6388 45 1 -2.0923 6.9116 -5.4448 46 1 -1.3017 7.5785 -3.9834 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159716128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:46 Heat of formation + Delta-G solvation = -12.643375 kcal Electronic energy + Delta-G solvation = -27801.572322 eV Core-core repulsion = 23920.515132 eV Total energy + Delta-G solvation = -3881.057189 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.54160 -40.92469 -40.31498 -37.29237 -35.97315 -35.31496 -34.31423 -32.74378 -32.27135 -30.18025 -29.82615 -28.64911 -26.86245 -25.11666 -23.92298 -23.41754 -22.29461 -21.74254 -21.32648 -21.09555 -19.66691 -18.95349 -17.74509 -17.52428 -17.11022 -17.05492 -16.56611 -16.38150 -16.21340 -15.78628 -15.63151 -15.16305 -14.72929 -14.67069 -14.51843 -14.16452 -14.03041 -13.75157 -13.53328 -13.30279 -13.15070 -12.89073 -12.72558 -12.64154 -12.27327 -12.18232 -12.11981 -12.10059 -11.95979 -11.71954 -11.63215 -11.49998 -11.06914 -10.91545 -10.81721 -10.51103 -9.93757 -9.73610 -8.96488 -8.14103 -6.31046 0.83112 1.01969 1.47862 1.48882 1.56543 1.88801 1.96692 2.36586 2.44187 2.96881 3.15838 3.34092 3.37132 3.60886 3.72882 3.87143 4.09568 4.19503 4.28457 4.37587 4.41671 4.53467 4.55161 4.61286 4.66531 4.74976 4.78840 4.81961 4.85025 5.01608 5.03241 5.09320 5.10519 5.19079 5.30612 5.47070 5.53510 5.62024 5.71788 5.79676 5.85202 5.89698 6.01623 6.19029 6.24589 6.75333 6.77992 7.18706 7.36833 7.65499 8.90981 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014913 B = 0.003116 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.046160 B = 8984.282998 C =10380.530770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.299 3.701 4 H 0.003 0.997 5 C -0.548 4.548 6 H 0.074 0.926 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.968 3.032 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.264 1.264 13 N -0.708 5.708 14 C 0.701 3.299 15 O -0.593 6.593 16 N -0.651 5.651 17 C 0.331 3.669 18 C -0.314 4.314 19 C 0.063 3.937 20 N -0.309 5.309 21 N -0.384 5.384 22 C 0.135 3.865 23 C -0.136 4.136 24 H 0.073 0.927 25 C -0.139 4.139 26 C 0.036 3.964 27 O -0.405 6.405 28 C 0.059 3.941 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.027 0.973 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.265 0.735 35 H 0.403 0.597 36 H 0.419 0.581 37 H 0.147 0.853 38 H 0.209 0.791 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.652 8.149 -19.746 22.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.161 4.161 3 C 0.195 3.805 4 H 0.020 0.980 5 C -0.587 4.587 6 H 0.092 0.908 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.793 3.207 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.361 5.361 14 C 0.400 3.600 15 O -0.470 6.470 16 N -0.303 5.303 17 C 0.109 3.891 18 C -0.347 4.347 19 C -0.123 4.123 20 N -0.131 5.131 21 N -0.172 5.172 22 C 0.015 3.985 23 C -0.156 4.156 24 H 0.092 0.908 25 C -0.177 4.177 26 C -0.040 4.040 27 O -0.325 6.325 28 C -0.017 4.017 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.238 0.762 36 H 0.257 0.743 37 H 0.165 0.835 38 H 0.225 0.775 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.106 0.894 42 H 0.128 0.872 43 H 0.121 0.879 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.585 8.791 -19.809 22.650 hybrid contribution 1.650 -0.635 0.852 1.963 sum -4.935 8.157 -18.957 21.219 Atomic orbital electron populations 1.21648 0.96980 0.98940 1.00282 1.21814 0.93686 0.99184 1.01382 1.18301 0.93432 0.88815 0.79947 0.97955 1.21529 0.91299 1.39063 1.06770 0.90831 1.25713 1.03055 0.94430 0.95063 1.70034 1.37067 1.38177 1.09847 0.85461 0.79368 0.78353 0.77515 1.19801 1.21450 1.18870 1.45385 1.13494 1.58515 1.18741 1.15855 0.83286 0.78727 0.82088 1.90855 1.52204 1.64591 1.39390 1.41747 1.14039 1.58019 1.16453 1.17696 0.86409 0.95207 0.89824 1.21633 0.94985 1.15435 1.02604 1.24094 0.99980 0.96121 0.92059 1.77341 0.93995 1.24421 1.17318 1.48747 1.12146 1.45539 1.10780 1.22086 0.96130 0.98016 0.82295 1.22939 0.97299 0.94753 1.00655 0.90821 1.22960 1.00259 0.99557 0.94956 1.23671 0.98191 0.92473 0.89689 1.89123 1.71488 1.32156 1.39697 1.23343 0.95280 0.87858 0.95265 0.93953 0.93933 0.95378 0.93952 0.90928 0.92595 0.76187 0.74323 0.83500 0.77477 0.86578 0.86578 0.89449 0.87151 0.87865 0.90787 0.91240 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.28 8.51 71.98 0.61 -4.66 16 2 C -0.12 -5.71 5.45 30.60 0.17 -5.54 16 3 C 0.30 14.42 2.24 44.25 0.10 14.52 16 4 H 0.00 0.15 7.58 -2.39 -0.02 0.13 16 5 C -0.55 -27.45 8.73 25.60 0.22 -27.23 16 6 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 7 C 0.02 0.92 5.29 84.65 0.45 1.37 16 8 N -0.91 -50.59 11.29 21.45 0.24 -50.35 16 9 Si 0.97 40.51 29.54 68.60 2.03 42.53 16 10 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 11 H -0.29 -12.15 7.11 99.48 0.71 -11.45 16 12 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 13 N -0.71 -26.67 5.03 -461.41 -2.32 -28.99 16 14 C 0.70 26.04 7.10 179.05 1.27 27.31 16 15 O -0.59 -26.78 10.60 -3.99 -0.04 -26.82 16 16 N -0.65 -17.82 5.42 -322.30 -1.75 -19.57 16 17 C 0.33 9.60 7.66 131.31 1.01 10.60 16 18 C -0.31 -10.33 9.65 22.14 0.21 -10.12 16 19 C 0.06 1.69 12.01 85.21 1.02 2.71 16 20 N -0.31 -8.08 12.56 -57.09 -0.72 -8.80 16 21 N -0.38 -8.97 3.51 -344.99 -1.21 -10.18 16 22 C 0.13 1.92 5.40 86.38 0.47 2.38 16 23 C -0.14 -2.04 3.35 -9.78 -0.03 -2.08 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 C -0.14 -1.30 6.74 31.61 0.21 -1.09 16 26 C 0.04 0.44 7.63 72.49 0.55 0.99 16 27 O -0.41 -8.56 11.65 -148.98 -1.74 -10.29 16 28 C 0.06 1.16 7.08 72.49 0.51 1.67 16 29 H 0.04 1.79 5.64 -2.39 -0.01 1.77 16 30 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.03 1.32 7.84 -2.39 -0.02 1.30 16 32 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.07 3.86 5.95 -2.39 -0.01 3.84 16 34 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 35 H 0.40 12.26 8.55 -92.71 -0.79 11.47 16 36 H 0.42 7.89 7.99 -92.71 -0.74 7.15 16 37 H 0.15 5.75 5.82 -2.91 -0.02 5.73 16 38 H 0.21 4.10 8.06 -2.91 -0.02 4.08 16 39 H 0.12 1.05 7.51 -2.39 -0.02 1.03 16 40 H 0.12 1.34 7.96 -2.39 -0.02 1.32 16 41 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.11 0.45 7.73 -2.39 -0.02 0.43 16 43 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 44 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.07 1.31 7.74 -2.39 -0.02 1.29 16 46 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -69.06 369.20 0.75 -68.31 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: -0.52 Total: 33.32 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 6.78 Total: 10.85 kcal Atomic # 7 Polarization: -112.14 SS G_CDS: -5.75 Total: -117.89 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -1.78 Total: -37.11 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.53 kcal Total: -69.06 0.75 -68.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159716128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.667 kcal (2) G-P(sol) polarization free energy of solvation -69.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds