Wall clock time and date at job start Tue Mar 31 2020 12:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47231 * 2 1 4 4 H 1.09009 * 109.46591 * 304.99884 * 3 2 1 5 5 C 1.50695 * 109.47367 * 185.00041 * 3 2 1 6 6 H 1.07992 * 120.00067 * 239.99945 * 5 3 2 7 7 C 1.37883 * 120.00179 * 59.99503 * 5 3 2 8 8 N 1.31525 * 119.99607 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00088 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47370 * 59.99784 * 9 7 5 11 11 H 1.48504 * 109.46815 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46661 * 299.99623 * 9 7 5 13 13 N 1.46495 * 109.47468 * 64.99631 * 3 2 1 14 14 C 1.34780 * 120.00382 * 275.00356 * 13 3 2 15 15 O 1.21594 * 119.99487 * 0.02562 * 14 13 3 16 16 N 1.34769 * 120.00508 * 179.97438 * 14 13 3 17 17 C 1.39501 * 120.00228 * 180.02562 * 16 14 13 18 18 C 1.36097 * 126.21481 * 0.02562 * 17 16 14 19 19 C 1.39767 * 107.82754 * 179.72340 * 18 17 16 20 20 N 1.30846 * 108.31920 * 0.24261 * 19 18 17 21 21 N 1.35254 * 126.21446 * 180.16362 * 17 16 14 22 22 C 1.46498 * 126.04662 * 0.02749 * 21 17 16 23 23 C 1.52998 * 109.47407 * 270.26812 * 22 21 17 24 24 H 1.09001 * 110.45884 * 52.39113 * 23 22 21 25 25 C 1.54509 * 110.51251 * 175.00171 * 23 22 21 26 26 C 1.54479 * 104.06383 * 118.64431 * 25 23 22 27 27 O 1.44430 * 104.80228 * 23.97847 * 26 25 23 28 28 C 1.44426 * 105.27503 * 319.48582 * 27 26 25 29 29 H 1.08994 * 109.47044 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47205 * 300.00384 * 1 2 3 31 31 H 1.08995 * 109.47344 * 60.00090 * 1 2 3 32 32 H 1.08996 * 109.47337 * 239.99547 * 2 1 3 33 33 H 1.09000 * 109.47197 * 119.99466 * 2 1 3 34 34 H 0.96999 * 119.99258 * 179.97438 * 8 7 5 35 35 H 0.96998 * 119.99805 * 94.99803 * 13 3 2 36 36 H 0.97004 * 120.00122 * 0.02562 * 16 14 13 37 37 H 1.08002 * 126.08955 * 359.97438 * 18 17 16 38 38 H 1.07997 * 125.84336 * 180.22237 * 19 18 17 39 39 H 1.09003 * 109.46870 * 30.26305 * 22 21 17 40 40 H 1.08992 * 109.47239 * 150.26516 * 22 21 17 41 41 H 1.09006 * 110.50371 * 237.28503 * 25 23 22 42 42 H 1.08996 * 110.51090 * 359.85831 * 25 23 22 43 43 H 1.09004 * 110.37062 * 142.80737 * 26 25 23 44 44 H 1.08999 * 110.37291 * 265.14624 * 26 25 23 45 45 H 1.09002 * 110.37400 * 281.68590 * 28 27 26 46 46 H 1.08995 * 110.36875 * 159.34218 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8889 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3373 -2.1733 9 14 6.0050 0.8800 -1.3811 10 1 6.5967 0.1454 -0.2342 11 1 6.3978 0.2166 -2.6503 12 1 6.5004 2.2800 -1.3809 13 7 1.6525 2.0976 1.2517 14 6 0.4351 2.6645 1.3669 15 8 -0.3416 2.6318 0.4319 16 7 0.0784 3.2667 2.5185 17 6 -1.1818 3.8530 2.6379 18 6 -2.1454 3.8905 1.6775 19 6 -3.2507 4.5630 2.2063 20 7 -2.9660 4.9218 3.4320 21 7 -1.6669 4.4898 3.7281 22 6 -0.9607 4.6875 4.9963 23 6 -1.2426 3.5060 5.9266 24 1 -1.0280 2.5640 5.4219 25 6 -0.4110 3.6273 7.2231 26 6 -1.4719 3.7200 8.3422 27 8 -2.6488 3.0928 7.7878 28 6 -2.7076 3.5397 6.4157 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 3.8293 -0.0605 -2.9502 35 1 2.2719 2.1232 1.9977 36 1 0.6979 3.2925 3.2646 37 1 -2.0710 3.4713 0.6850 38 1 -4.1805 4.7542 1.6913 39 1 0.1109 4.7546 4.8088 40 1 -1.3061 5.6091 5.4646 41 1 0.2130 2.7441 7.3606 42 1 0.2028 4.5277 7.2003 43 1 -1.1365 3.1812 9.2285 44 1 -1.6765 4.7625 8.5857 45 1 -3.1017 4.5547 6.3638 46 1 -3.3215 2.8624 5.8221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159716274.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:50 Heat of formation + Delta-G solvation = 7.891157 kcal Electronic energy + Delta-G solvation = -27831.749821 eV Core-core repulsion = 23951.583076 eV Total energy + Delta-G solvation = -3880.166745 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.40867 -39.74284 -39.32138 -35.61098 -34.88859 -34.13032 -32.48517 -31.51410 -30.92907 -29.38589 -28.58731 -26.86320 -26.02495 -23.35663 -23.15747 -22.02939 -21.28647 -20.78074 -19.87182 -19.59767 -18.33330 -17.63521 -16.79688 -16.23313 -15.93431 -15.63851 -15.41419 -15.36980 -14.88466 -14.58984 -14.31438 -13.89568 -13.63590 -13.47470 -13.23760 -12.96270 -12.70888 -12.58226 -12.30288 -12.04919 -11.69450 -11.65414 -11.37779 -11.30784 -11.07156 -11.06095 -10.90714 -10.64679 -10.56316 -10.36947 -10.22471 -10.11344 -9.65842 -9.39277 -9.11674 -8.88604 -8.57098 -8.10244 -7.68344 -6.18629 -4.28566 1.97739 2.16050 3.08675 3.09480 3.21045 3.27261 3.28353 3.62008 3.81789 4.04660 4.25175 4.27234 4.40451 4.57409 4.71896 4.75053 4.87321 4.93808 5.08032 5.13122 5.22837 5.28728 5.35618 5.52082 5.59263 5.63522 5.69845 5.79426 6.20591 6.35191 6.38129 6.43887 6.45227 6.60997 6.86586 6.95937 7.04803 7.19355 7.27969 7.31395 7.39914 7.57347 7.73876 7.83573 7.95200 8.11939 8.61515 8.73694 9.10766 9.39087 10.86634 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016582 B = 0.002979 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.136076 B = 9397.442800 C =10248.740656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.288 3.712 4 H 0.052 0.948 5 C -0.538 4.538 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.714 5.714 14 C 0.700 3.300 15 O -0.558 6.558 16 N -0.671 5.671 17 C 0.339 3.661 18 C -0.285 4.285 19 C 0.062 3.938 20 N -0.306 5.306 21 N -0.396 5.396 22 C 0.143 3.857 23 C -0.143 4.143 24 H 0.089 0.911 25 C -0.149 4.149 26 C 0.044 3.956 27 O -0.377 6.377 28 C 0.059 3.941 29 H 0.022 0.978 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.100 0.900 33 H 0.030 0.970 34 H 0.266 0.734 35 H 0.386 0.614 36 H 0.399 0.601 37 H 0.176 0.824 38 H 0.182 0.818 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.023 7.289 17.070 19.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 C 0.186 3.814 4 H 0.070 0.930 5 C -0.576 4.576 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.366 5.366 14 C 0.399 3.601 15 O -0.434 6.434 16 N -0.322 5.322 17 C 0.118 3.882 18 C -0.317 4.317 19 C -0.124 4.124 20 N -0.128 5.128 21 N -0.184 5.184 22 C 0.021 3.979 23 C -0.163 4.163 24 H 0.108 0.892 25 C -0.187 4.187 26 C -0.033 4.033 27 O -0.295 6.295 28 C -0.018 4.018 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.118 0.882 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.218 0.782 36 H 0.233 0.767 37 H 0.193 0.807 38 H 0.199 0.801 39 H 0.107 0.893 40 H 0.117 0.883 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.110 0.890 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.118 7.546 17.172 20.439 hybrid contribution 2.206 -0.308 -0.128 2.231 sum -5.912 7.238 17.044 19.438 Atomic orbital electron populations 1.21823 0.98163 0.98076 1.01307 1.21969 0.92772 0.99742 1.02312 1.18770 0.94074 0.88915 0.79604 0.93008 1.21157 0.90538 1.39457 1.06447 0.92150 1.24870 0.98649 0.94714 0.95323 1.69884 1.35281 1.37272 1.09281 0.86498 0.84713 0.78317 0.77510 1.20171 1.21072 1.20191 1.45830 1.12777 1.58440 1.19505 1.15841 0.83893 0.78841 0.81481 1.90847 1.51268 1.63552 1.37686 1.42260 1.13713 1.59045 1.17162 1.17752 0.86642 0.94716 0.89066 1.21722 0.92988 1.13931 1.03052 1.23746 0.99577 0.97010 0.92077 1.77374 0.92885 1.25052 1.17461 1.48511 1.12577 1.46996 1.10354 1.21650 0.95973 0.99007 0.81254 1.23036 0.97147 0.99689 0.96406 0.89248 1.22964 0.98591 1.03628 0.93517 1.23408 0.84897 0.98144 0.96809 1.89151 1.45421 1.70168 1.24802 1.23412 0.95253 1.00805 0.82301 0.95895 0.94337 0.92995 0.88160 0.95080 0.92386 0.78234 0.76725 0.80678 0.80093 0.89321 0.88281 0.89926 0.89949 0.88996 0.92162 0.91363 0.89079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.16 0.32 -2.63 16 2 C -0.13 -3.00 5.45 -26.73 -0.15 -3.15 16 3 C 0.29 6.84 2.24 -69.09 -0.15 6.69 16 4 H 0.05 1.44 7.58 -51.92 -0.39 1.04 16 5 C -0.54 -13.51 8.73 -34.44 -0.30 -13.81 16 6 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 7 C 0.07 1.76 5.29 -17.81 -0.09 1.67 16 8 N -0.88 -23.84 11.30 55.43 0.63 -23.21 16 9 Si 0.90 19.91 29.54 -169.99 -5.02 14.88 16 10 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 N -0.71 -13.63 5.03 -59.81 -0.30 -13.93 16 14 C 0.70 13.03 7.10 -86.92 -0.62 12.41 16 15 O -0.56 -12.19 10.60 5.28 0.06 -12.13 16 16 N -0.67 -9.63 5.42 -15.85 -0.09 -9.72 16 17 C 0.34 5.07 7.66 -153.14 -1.17 3.90 16 18 C -0.28 -4.62 9.65 -39.78 -0.38 -5.00 16 19 C 0.06 0.84 12.01 -17.40 -0.21 0.64 16 20 N -0.31 -4.21 12.56 30.60 0.38 -3.83 16 21 N -0.40 -4.98 3.51 -60.39 -0.21 -5.19 16 22 C 0.14 1.24 5.40 -4.04 -0.02 1.22 16 23 C -0.14 -1.21 3.35 -89.05 -0.30 -1.51 16 24 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 25 C -0.15 -0.93 6.74 -25.16 -0.17 -1.10 16 26 C 0.04 0.32 7.63 37.93 0.29 0.61 16 27 O -0.38 -4.14 11.65 -35.23 -0.41 -4.55 16 28 C 0.06 0.60 7.08 37.94 0.27 0.87 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.81 5.64 -51.93 -0.29 0.52 16 31 H 0.05 1.19 7.84 -51.93 -0.41 0.79 16 32 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.39 6.22 8.55 -40.82 -0.35 5.87 16 36 H 0.40 4.29 7.99 -40.82 -0.33 3.96 16 37 H 0.18 3.25 5.82 -52.49 -0.31 2.94 16 38 H 0.18 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.09 0.60 7.51 -51.93 -0.39 0.21 16 40 H 0.10 0.77 7.96 -51.93 -0.41 0.35 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.37 7.73 -51.93 -0.40 -0.04 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.69 7.74 -51.93 -0.40 0.28 16 46 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 369.20 15.07 5.56 5.56 Total: -1.00 -30.69 369.20 -9.01 -39.70 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -6.91 Total: 11.62 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -2.69 Total: 0.79 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 0.41 Total: -55.88 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.35 Total: -16.68 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.69 -9.01 -39.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159716274.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.592 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds