Wall clock time and date at job start Tue Mar 31 2020 14:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.49040 * 2 1 4 4 C 1.53091 * 109.48044 * 120.03001 * 2 1 3 5 5 C 1.53176 * 109.21206 * 62.40612 * 4 2 1 6 6 N 1.46508 * 109.54169 * 176.90465 * 5 4 2 7 7 C 1.34771 * 119.99901 * 155.00057 * 6 5 4 8 8 O 1.21592 * 120.00136 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99755 * 180.02562 * 7 6 5 10 10 C 1.40196 * 120.00231 * 180.02562 * 9 7 6 11 11 C 1.40405 * 125.96895 * 359.71186 * 10 9 7 12 12 C 1.35244 * 107.86521 * 179.82975 * 11 10 9 13 13 N 1.34965 * 107.85806 * 0.42902 * 12 11 10 14 14 C 1.46504 * 125.97177 * 179.70467 * 13 12 11 15 15 C 1.50706 * 109.46690 * 125.00623 * 14 13 12 16 16 H 1.07999 * 119.99880 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99539 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00270 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99679 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47603 * 59.99651 * 19 17 15 21 21 H 1.48500 * 109.47113 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46941 * 299.99720 * 19 17 15 23 23 N 1.31202 * 125.97692 * 180.02562 * 10 9 7 24 24 C 1.53174 * 109.03724 * 56.94941 * 5 4 2 25 25 C 1.53084 * 109.16456 * 303.01556 * 24 5 4 26 26 H 1.08997 * 109.48095 * 297.62758 * 25 24 5 27 27 C 1.52998 * 109.48368 * 177.59004 * 25 24 5 28 28 O 1.42906 * 109.41372 * 57.61236 * 25 24 5 29 29 H 1.09001 * 109.46806 * 299.97024 * 1 2 3 30 30 H 1.09001 * 109.46905 * 59.96638 * 1 2 3 31 31 H 1.09001 * 109.47186 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.52401 * 302.46765 * 4 2 1 33 33 H 1.09004 * 109.52068 * 182.34410 * 4 2 1 34 34 H 1.08995 * 109.54545 * 297.07504 * 5 4 2 35 35 H 0.97005 * 119.99651 * 334.99796 * 6 5 4 36 36 H 0.97005 * 120.00374 * 359.97438 * 9 7 6 37 37 H 1.07997 * 126.06902 * 0.02562 * 11 10 9 38 38 H 1.08004 * 126.06916 * 180.16399 * 12 11 10 39 39 H 1.08998 * 109.46835 * 245.00126 * 14 13 12 40 40 H 1.09000 * 109.47337 * 5.00378 * 14 13 12 41 41 H 0.97005 * 120.00233 * 180.02562 * 18 17 15 42 42 H 1.09007 * 109.52410 * 62.92341 * 24 5 4 43 43 H 1.09000 * 109.52423 * 183.04692 * 24 5 4 44 44 H 1.09010 * 109.46671 * 60.00379 * 27 25 24 45 45 H 1.08996 * 109.47238 * 180.02562 * 27 25 24 46 46 H 1.08996 * 109.47603 * 300.00250 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7223 1.2495 5 6 1.5770 -2.1818 1.2128 6 7 2.1233 -2.8986 2.3679 7 6 1.4955 -3.9939 2.8397 8 8 0.4756 -4.3869 2.3070 9 7 1.9978 -4.6531 3.9026 10 6 1.3452 -5.7928 4.3931 11 6 0.1637 -6.3516 3.8799 12 6 -0.1377 -7.4400 4.6238 13 7 0.8083 -7.5638 5.5785 14 6 0.8628 -8.6067 6.6060 15 6 2.1971 -9.3045 6.5431 16 1 2.9308 -9.0016 5.8108 17 6 2.4810 -10.3294 7.4205 18 7 1.5876 -10.6978 8.3125 19 14 4.1351 -11.1939 7.3430 20 1 5.2204 -10.2083 7.5795 21 1 4.1904 -12.2512 8.3844 22 1 4.3094 -11.8100 6.0031 23 7 1.7284 -6.5203 5.4155 24 6 2.0777 -2.8327 -0.0802 25 6 1.5645 -2.0299 -1.2783 26 1 0.4750 -2.0574 -1.2945 27 6 2.1098 -2.6386 -2.5718 28 8 2.0054 -0.6752 -1.1664 29 1 -0.3633 0.5134 0.8903 30 1 -0.3633 0.5144 -0.8897 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6421 -0.2358 2.1399 33 1 3.1298 -0.6864 1.2715 34 1 0.4881 -2.2194 1.2421 35 1 2.9368 -2.5849 2.7930 36 1 2.8113 -4.3394 4.3278 37 1 -0.4020 -5.9801 3.0383 38 1 -0.9871 -8.0918 4.4821 39 1 0.7352 -8.1547 7.5896 40 1 0.0660 -9.3299 6.4322 41 1 1.7875 -11.4187 8.9301 42 1 3.1677 -2.8395 -0.0862 43 1 1.7068 -3.8558 -0.1403 44 1 1.7742 -3.6723 -2.6565 45 1 1.7446 -2.0666 -3.4247 46 1 3.1993 -2.6105 -2.5556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161392867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:08 Heat of formation + Delta-G solvation = 0.638360 kcal Electronic energy + Delta-G solvation = -26990.354709 eV Core-core repulsion = 23109.873458 eV Total energy + Delta-G solvation = -3880.481250 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.91261 -40.33321 -39.25506 -35.63479 -34.61654 -33.71389 -33.37456 -32.09738 -30.76851 -29.34088 -29.07144 -27.06328 -26.60251 -23.89588 -22.99896 -22.53445 -21.44192 -20.43021 -20.05475 -19.53863 -18.00507 -17.08870 -16.58563 -16.55650 -16.32188 -15.77856 -15.52971 -14.97435 -14.90079 -14.50074 -14.32076 -14.13373 -13.88612 -13.77925 -13.19912 -12.94682 -12.78168 -12.48121 -12.33254 -12.27993 -12.21473 -12.05689 -11.80957 -11.67021 -11.42775 -11.25174 -11.05416 -10.86734 -10.50603 -10.42194 -10.25035 -10.12278 -9.87134 -9.64899 -9.50101 -9.24481 -8.62425 -8.09717 -7.41043 -6.23648 -4.28745 2.35258 2.66429 3.10873 3.25662 3.28878 3.33212 3.38792 3.59396 3.83579 4.20457 4.27353 4.36182 4.43456 4.50005 4.66811 4.71142 4.92977 4.95420 5.01565 5.11327 5.14234 5.18282 5.38258 5.43717 5.49929 5.56132 5.59858 5.63970 5.74607 5.78582 5.82094 5.87656 6.00967 6.21666 6.31393 6.54534 6.59176 6.87554 6.93373 7.01616 7.11479 7.50062 7.69983 7.83073 7.97980 8.07554 8.58342 8.67005 8.81232 9.36725 10.84970 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025629 B = 0.002194 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.268901 B =12757.331846 C =13055.587075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.094 3.906 3 H 0.106 0.894 4 C -0.159 4.159 5 C 0.164 3.836 6 N -0.740 5.740 7 C 0.714 3.286 8 O -0.567 6.567 9 N -0.644 5.644 10 C 0.275 3.725 11 C -0.286 4.286 12 C 0.051 3.949 13 N -0.321 5.321 14 C 0.259 3.741 15 C -0.528 4.528 16 H 0.068 0.932 17 C 0.062 3.938 18 N -0.895 5.895 19 Si 0.908 3.092 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.275 1.275 23 N -0.308 5.308 24 C -0.162 4.162 25 C 0.086 3.914 26 H 0.065 0.935 27 C -0.144 4.144 28 O -0.375 6.375 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.396 0.604 36 H 0.406 0.594 37 H 0.160 0.840 38 H 0.167 0.833 39 H 0.045 0.955 40 H 0.057 0.943 41 H 0.268 0.732 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.507 21.094 -16.970 27.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.036 3.964 3 H 0.124 0.876 4 C -0.197 4.197 5 C 0.059 3.941 6 N -0.396 5.396 7 C 0.413 3.587 8 O -0.443 6.443 9 N -0.293 5.293 10 C 0.021 3.979 11 C -0.318 4.318 12 C -0.099 4.099 13 N -0.103 5.103 14 C 0.142 3.858 15 C -0.567 4.567 16 H 0.086 0.914 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.735 3.265 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.201 1.201 23 N -0.139 5.139 24 C -0.201 4.201 25 C 0.028 3.972 26 H 0.083 0.917 27 C -0.201 4.201 28 O -0.294 6.294 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.230 0.770 36 H 0.241 0.759 37 H 0.178 0.822 38 H 0.185 0.815 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.503 20.430 -16.424 26.218 hybrid contribution 0.962 -0.353 0.226 1.050 sum 0.459 20.077 -16.198 25.801 Atomic orbital electron populations 1.22519 0.96135 1.03249 1.02989 1.22085 0.93682 0.96312 0.84329 0.87591 1.22522 1.02473 0.95090 0.99610 1.20846 0.99600 0.89693 0.83951 1.45113 1.30380 1.29483 1.34596 1.15638 0.83211 0.80033 0.79815 1.90859 1.24768 1.67921 1.60735 1.41395 1.29068 1.27039 1.31834 1.18785 0.93963 0.89395 0.95744 1.21503 1.01207 1.00805 1.08244 1.22558 0.96129 0.99234 0.92012 1.49057 1.16080 1.20663 1.24456 1.19728 0.99512 0.82231 0.84378 1.21220 0.99939 1.17020 1.18504 0.91382 1.24943 0.97795 0.96606 0.94741 1.69907 1.34612 1.29348 1.19515 0.86387 0.83281 0.78982 0.77840 1.19960 1.21044 1.20052 1.77319 1.15959 1.01583 1.19024 1.22695 1.02165 1.00999 0.94279 1.22081 0.98407 0.81686 0.95006 0.91747 1.21758 1.02035 1.00552 0.95792 1.87984 1.73811 1.24717 1.42923 0.91246 0.91592 0.91532 0.90018 0.90370 0.88801 0.76971 0.75906 0.82216 0.81542 0.93765 0.92550 0.92279 0.90867 0.89914 0.90898 0.91835 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.22 8.66 37.16 0.32 -0.89 16 2 C 0.09 0.63 3.92 -26.68 -0.10 0.53 16 3 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 4 C -0.16 -1.03 5.11 -26.59 -0.14 -1.17 16 5 C 0.16 1.48 2.23 -67.74 -0.15 1.33 16 6 N -0.74 -7.30 5.09 -58.49 -0.30 -7.60 16 7 C 0.71 10.33 8.51 -86.92 -0.74 9.59 16 8 O -0.57 -10.01 13.13 5.28 0.07 -9.94 16 9 N -0.64 -9.97 5.45 -15.51 -0.08 -10.06 16 10 C 0.28 5.57 8.11 -154.37 -1.25 4.31 16 11 C -0.29 -5.74 9.61 -39.83 -0.38 -6.12 16 12 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 13 N -0.32 -7.51 3.67 -62.55 -0.23 -7.74 16 14 C 0.26 6.61 6.26 -5.19 -0.03 6.58 16 15 C -0.53 -14.75 9.24 -34.44 -0.32 -15.07 16 16 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.90 -25.38 13.29 55.43 0.74 -24.65 16 19 Si 0.91 21.40 29.54 -169.99 -5.02 16.38 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 N -0.31 -7.12 12.42 31.44 0.39 -6.73 16 24 C -0.16 -1.49 5.00 -26.60 -0.13 -1.63 16 25 C 0.09 0.72 2.94 -26.69 -0.08 0.64 16 26 H 0.06 0.53 6.35 -51.93 -0.33 0.20 16 27 C -0.14 -1.06 9.56 37.16 0.36 -0.71 16 28 O -0.37 -3.29 10.23 -35.23 -0.36 -3.65 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.49 4.98 -51.93 -0.26 0.23 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 1.00 6.06 -51.93 -0.31 0.68 16 35 H 0.40 2.81 8.62 -40.82 -0.35 2.46 16 36 H 0.41 5.09 8.84 -40.82 -0.36 4.72 16 37 H 0.16 3.14 5.91 -52.49 -0.31 2.83 16 38 H 0.17 2.74 8.06 -52.48 -0.42 2.32 16 39 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 41 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 372.74 15.07 5.62 5.62 Total: -1.00 -33.05 372.74 -9.09 -42.14 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -6.96 Total: 6.41 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -2.94 Total: -0.18 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: 0.52 Total: -56.78 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.29 Total: -13.59 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.05 -9.09 -42.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161392867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.778 kcal (2) G-P(sol) polarization free energy of solvation -33.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds