Wall clock time and date at job start Tue Mar 31 2020 14:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.49040 * 2 1 4 4 C 1.53091 * 109.48044 * 120.03001 * 2 1 3 5 5 C 1.53176 * 109.21206 * 62.40612 * 4 2 1 6 6 N 1.46508 * 109.54169 * 176.90465 * 5 4 2 7 7 C 1.34771 * 119.99901 * 155.00057 * 6 5 4 8 8 O 1.21592 * 120.00136 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99755 * 180.02562 * 7 6 5 10 10 C 1.40196 * 120.00231 * 180.02562 * 9 7 6 11 11 C 1.40405 * 125.96895 * 359.71186 * 10 9 7 12 12 C 1.35244 * 107.86521 * 179.82975 * 11 10 9 13 13 N 1.34965 * 107.85806 * 0.42902 * 12 11 10 14 14 C 1.46504 * 125.97177 * 179.70467 * 13 12 11 15 15 C 1.50706 * 109.46690 * 125.00623 * 14 13 12 16 16 H 1.07999 * 119.99880 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99539 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00270 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99679 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47603 * 59.99651 * 19 17 15 21 21 H 1.48500 * 109.47113 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46941 * 299.99720 * 19 17 15 23 23 N 1.31202 * 125.97692 * 180.02562 * 10 9 7 24 24 C 1.53174 * 109.03724 * 56.94941 * 5 4 2 25 25 C 1.53084 * 109.16456 * 303.01556 * 24 5 4 26 26 H 1.08997 * 109.48095 * 297.62758 * 25 24 5 27 27 C 1.52998 * 109.48368 * 177.59004 * 25 24 5 28 28 O 1.42906 * 109.41372 * 57.61236 * 25 24 5 29 29 H 1.09001 * 109.46806 * 299.97024 * 1 2 3 30 30 H 1.09001 * 109.46905 * 59.96638 * 1 2 3 31 31 H 1.09001 * 109.47186 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.52401 * 302.46765 * 4 2 1 33 33 H 1.09004 * 109.52068 * 182.34410 * 4 2 1 34 34 H 1.08995 * 109.54545 * 297.07504 * 5 4 2 35 35 H 0.97005 * 119.99651 * 334.99796 * 6 5 4 36 36 H 0.97005 * 120.00374 * 359.97438 * 9 7 6 37 37 H 1.07997 * 126.06902 * 0.02562 * 11 10 9 38 38 H 1.08004 * 126.06916 * 180.16399 * 12 11 10 39 39 H 1.08998 * 109.46835 * 245.00126 * 14 13 12 40 40 H 1.09000 * 109.47337 * 5.00378 * 14 13 12 41 41 H 0.97005 * 120.00233 * 180.02562 * 18 17 15 42 42 H 1.09007 * 109.52410 * 62.92341 * 24 5 4 43 43 H 1.09000 * 109.52423 * 183.04692 * 24 5 4 44 44 H 1.09010 * 109.46671 * 60.00379 * 27 25 24 45 45 H 1.08996 * 109.47238 * 180.02562 * 27 25 24 46 46 H 1.08996 * 109.47603 * 300.00250 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7223 1.2495 5 6 1.5770 -2.1818 1.2128 6 7 2.1233 -2.8986 2.3679 7 6 1.4955 -3.9939 2.8397 8 8 0.4756 -4.3869 2.3070 9 7 1.9978 -4.6531 3.9026 10 6 1.3452 -5.7928 4.3931 11 6 0.1637 -6.3516 3.8799 12 6 -0.1377 -7.4400 4.6238 13 7 0.8083 -7.5638 5.5785 14 6 0.8628 -8.6067 6.6060 15 6 2.1971 -9.3045 6.5431 16 1 2.9308 -9.0016 5.8108 17 6 2.4810 -10.3294 7.4205 18 7 1.5876 -10.6978 8.3125 19 14 4.1351 -11.1939 7.3430 20 1 5.2204 -10.2083 7.5795 21 1 4.1904 -12.2512 8.3844 22 1 4.3094 -11.8100 6.0031 23 7 1.7284 -6.5203 5.4155 24 6 2.0777 -2.8327 -0.0802 25 6 1.5645 -2.0299 -1.2783 26 1 0.4750 -2.0574 -1.2945 27 6 2.1098 -2.6386 -2.5718 28 8 2.0054 -0.6752 -1.1664 29 1 -0.3633 0.5134 0.8903 30 1 -0.3633 0.5144 -0.8897 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6421 -0.2358 2.1399 33 1 3.1298 -0.6864 1.2715 34 1 0.4881 -2.2194 1.2421 35 1 2.9368 -2.5849 2.7930 36 1 2.8113 -4.3394 4.3278 37 1 -0.4020 -5.9801 3.0383 38 1 -0.9871 -8.0918 4.4821 39 1 0.7352 -8.1547 7.5896 40 1 0.0660 -9.3299 6.4322 41 1 1.7875 -11.4187 8.9301 42 1 3.1677 -2.8395 -0.0862 43 1 1.7068 -3.8558 -0.1403 44 1 1.7742 -3.6723 -2.6565 45 1 1.7446 -2.0666 -3.4247 46 1 3.1993 -2.6105 -2.5556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161392867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:07 Heat of formation + Delta-G solvation = -21.327249 kcal Electronic energy + Delta-G solvation = -26991.307209 eV Core-core repulsion = 23109.873458 eV Total energy + Delta-G solvation = -3881.433750 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.25503 -41.38948 -40.32979 -36.64230 -36.00144 -35.27578 -34.30783 -33.22115 -32.26607 -30.93132 -29.84894 -28.46877 -27.65573 -25.26706 -24.27018 -23.38846 -22.60506 -21.87987 -21.35904 -20.41338 -19.14730 -18.68989 -18.27915 -17.53326 -17.19729 -16.81104 -16.78880 -16.42350 -15.92892 -15.82438 -15.47939 -15.33172 -14.97020 -14.68117 -14.40876 -14.23243 -13.82680 -13.79879 -13.67566 -13.52104 -13.05288 -12.94725 -12.83746 -12.72932 -12.67938 -12.37847 -12.27929 -12.07945 -11.98267 -11.91082 -11.65541 -11.40167 -11.22122 -11.02892 -10.71869 -10.49120 -10.19477 -9.72472 -9.05525 -8.32431 -6.46711 1.07227 1.12513 1.38335 1.40195 1.49085 1.70155 2.09989 2.36007 2.40579 2.80928 2.98995 3.12161 3.61916 3.75861 3.89699 3.96872 4.04995 4.12082 4.28105 4.28661 4.39181 4.41997 4.51190 4.62401 4.74242 4.78899 4.84593 4.89414 4.94267 4.96098 4.99983 5.02773 5.07182 5.10985 5.16695 5.18511 5.29156 5.39231 5.49727 5.56899 5.76812 5.88601 5.97745 6.29606 6.33301 6.63691 6.76309 7.15026 7.23090 7.42631 8.74798 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025629 B = 0.002194 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.268901 B =12757.331846 C =13055.587075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.090 3.910 3 H 0.126 0.874 4 C -0.150 4.150 5 C 0.162 3.838 6 N -0.718 5.718 7 C 0.712 3.288 8 O -0.599 6.599 9 N -0.637 5.637 10 C 0.284 3.716 11 C -0.292 4.292 12 C 0.056 3.944 13 N -0.346 5.346 14 C 0.273 3.727 15 C -0.548 4.548 16 H 0.052 0.948 17 C 0.018 3.982 18 N -0.920 5.920 19 Si 0.971 3.029 20 H -0.273 1.273 21 H -0.273 1.273 22 H -0.270 1.270 23 N -0.348 5.348 24 C -0.157 4.157 25 C 0.088 3.912 26 H 0.062 0.938 27 C -0.144 4.144 28 O -0.386 6.386 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.413 0.587 36 H 0.420 0.580 37 H 0.167 0.833 38 H 0.201 0.799 39 H 0.021 0.979 40 H 0.058 0.942 41 H 0.273 0.727 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.455 22.341 -17.842 28.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.032 3.968 3 H 0.144 0.856 4 C -0.188 4.188 5 C 0.057 3.943 6 N -0.374 5.374 7 C 0.412 3.588 8 O -0.477 6.477 9 N -0.288 5.288 10 C 0.029 3.971 11 C -0.323 4.323 12 C -0.093 4.093 13 N -0.128 5.128 14 C 0.154 3.846 15 C -0.586 4.586 16 H 0.070 0.930 17 C -0.182 4.182 18 N -0.559 5.559 19 Si 0.795 3.205 20 H -0.198 1.198 21 H -0.198 1.198 22 H -0.195 1.195 23 N -0.179 5.179 24 C -0.196 4.196 25 C 0.030 3.970 26 H 0.080 0.920 27 C -0.201 4.201 28 O -0.306 6.306 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.250 0.750 36 H 0.258 0.742 37 H 0.184 0.816 38 H 0.217 0.783 39 H 0.039 0.961 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.489 21.737 -17.313 27.794 hybrid contribution 0.614 -0.608 0.405 0.954 sum 1.103 21.129 -16.908 27.084 Atomic orbital electron populations 1.22504 0.96060 1.02520 1.03645 1.22290 0.93824 0.97029 0.83640 0.85631 1.22489 1.03175 0.92887 1.00217 1.20969 0.98812 0.91223 0.83271 1.44991 1.30381 1.27701 1.34290 1.15803 0.83018 0.80680 0.79315 1.90832 1.26340 1.68987 1.61554 1.41398 1.29405 1.25879 1.32154 1.19086 0.93798 0.89759 0.94486 1.21676 1.01377 1.00876 1.08406 1.23157 0.96066 0.99453 0.90593 1.48822 1.17496 1.21107 1.25336 1.19327 0.98623 0.82460 0.84157 1.21370 1.00733 1.17860 1.18623 0.92971 1.25741 1.01277 0.97053 0.94159 1.69986 1.36248 1.29763 1.19909 0.85410 0.78850 0.77998 0.78229 1.19823 1.19782 1.19511 1.77238 1.17188 1.02566 1.20889 1.22618 1.02184 0.99917 0.94889 1.22053 0.98293 0.81723 0.94952 0.91988 1.21765 1.01981 1.00774 0.95558 1.87976 1.74049 1.24621 1.43918 0.90170 0.91400 0.92925 0.88633 0.89234 0.90395 0.74960 0.74240 0.81604 0.78267 0.96079 0.92380 0.91831 0.90543 0.92144 0.90642 0.91268 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.11 8.66 71.98 0.62 -1.49 16 2 C 0.09 1.00 3.92 30.63 0.12 1.12 16 3 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.15 -1.57 5.11 30.68 0.16 -1.41 16 5 C 0.16 2.69 2.23 45.11 0.10 2.79 16 6 N -0.72 -12.96 5.09 -457.24 -2.33 -15.28 16 7 C 0.71 19.92 8.51 179.06 1.52 21.44 16 8 O -0.60 -20.92 13.13 -4.01 -0.05 -20.97 16 9 N -0.64 -19.19 5.45 -321.24 -1.75 -20.95 16 10 C 0.28 11.45 8.11 133.32 1.08 12.53 16 11 C -0.29 -11.61 9.61 22.11 0.21 -11.40 16 12 C 0.06 2.23 11.44 83.52 0.96 3.19 16 13 N -0.35 -16.41 3.67 -351.82 -1.29 -17.70 16 14 C 0.27 14.27 6.26 85.63 0.54 14.81 16 15 C -0.55 -31.06 9.24 25.60 0.24 -30.82 16 16 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 17 C 0.02 1.00 5.46 84.66 0.46 1.47 16 18 N -0.92 -52.32 13.29 21.45 0.28 -52.03 16 19 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 N -0.35 -16.28 12.42 -54.44 -0.68 -16.96 16 24 C -0.16 -2.76 5.00 30.68 0.15 -2.60 16 25 C 0.09 1.39 2.94 30.62 0.09 1.48 16 26 H 0.06 1.01 6.35 -2.39 -0.02 0.99 16 27 C -0.14 -1.99 9.56 71.98 0.69 -1.30 16 28 O -0.39 -6.10 10.23 -148.98 -1.52 -7.63 16 29 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.74 4.98 -2.39 -0.01 0.73 16 32 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.08 1.61 6.06 -2.39 -0.01 1.59 16 35 H 0.41 4.83 8.62 -92.70 -0.80 4.04 16 36 H 0.42 10.02 8.84 -92.70 -0.82 9.20 16 37 H 0.17 6.44 5.91 -2.91 -0.02 6.42 16 38 H 0.20 6.32 8.06 -2.91 -0.02 6.29 16 39 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 2.96 8.07 -2.39 -0.02 2.94 16 41 H 0.27 14.52 8.31 -92.70 -0.77 13.75 16 42 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 45 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -71.32 372.74 1.02 -70.30 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: -0.61 Total: 25.72 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 6.94 Total: 9.80 kcal Atomic # 7 Polarization: -117.16 SS G_CDS: -5.76 Total: -122.92 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -1.58 Total: -28.60 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -71.32 1.02 -70.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161392867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.971 kcal (2) G-P(sol) polarization free energy of solvation -71.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds