Wall clock time and date at job start Tue Mar 31 2020 14:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.48601 * 2 1 4 4 C 1.53095 * 109.47844 * 239.97483 * 2 1 3 5 5 C 1.53180 * 109.16191 * 182.39751 * 4 2 1 6 6 N 1.46502 * 109.54328 * 176.85057 * 5 4 2 7 7 C 1.34776 * 120.00065 * 155.17797 * 6 5 4 8 8 O 1.21594 * 119.99804 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00060 * 180.02562 * 7 6 5 10 10 C 1.40193 * 120.00043 * 180.02562 * 9 7 6 11 11 C 1.40402 * 125.97069 * 359.97438 * 10 9 7 12 12 C 1.35245 * 107.86627 * 179.77501 * 11 10 9 13 13 N 1.34963 * 107.85990 * 0.22862 * 12 11 10 14 14 C 1.46495 * 125.98010 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47319 * 125.00174 * 14 13 12 16 16 H 1.07996 * 120.00446 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99818 * 180.02562 * 15 14 13 18 18 N 1.31503 * 120.00345 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99856 * 179.97438 * 17 15 14 20 20 H 1.48512 * 109.46980 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47214 * 119.99768 * 19 17 15 22 22 H 1.48501 * 109.47130 * 240.00144 * 19 17 15 23 23 N 1.31205 * 125.97551 * 180.17889 * 10 9 7 24 24 C 1.53173 * 109.10851 * 56.93673 * 5 4 2 25 25 C 1.53101 * 109.16093 * 303.15191 * 24 5 4 26 26 H 1.09000 * 109.48523 * 177.50291 * 25 24 5 27 27 C 1.52998 * 109.41787 * 297.48609 * 25 24 5 28 28 O 1.42904 * 109.48415 * 57.47565 * 25 24 5 29 29 H 1.09003 * 109.47380 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47012 * 300.02202 * 1 2 3 31 31 H 1.08999 * 109.47101 * 60.01770 * 1 2 3 32 32 H 1.09005 * 109.51893 * 62.49813 * 4 2 1 33 33 H 1.08997 * 109.52403 * 302.30599 * 4 2 1 34 34 H 1.09001 * 109.54569 * 297.02748 * 5 4 2 35 35 H 0.96998 * 119.99397 * 335.18267 * 6 5 4 36 36 H 0.96998 * 119.99402 * 359.97438 * 9 7 6 37 37 H 1.08002 * 126.07048 * 0.04567 * 11 10 9 38 38 H 1.07999 * 126.07438 * 180.24830 * 12 11 10 39 39 H 1.09005 * 109.47217 * 245.00508 * 14 13 12 40 40 H 1.09005 * 109.47021 * 4.99647 * 14 13 12 41 41 H 0.97001 * 120.00648 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.52243 * 62.96839 * 24 5 4 43 43 H 1.09002 * 109.52397 * 183.15751 * 24 5 4 44 44 H 1.08997 * 109.47369 * 179.97438 * 27 25 24 45 45 H 1.09000 * 109.47249 * 299.99365 * 27 25 24 46 46 H 1.09005 * 109.46948 * 59.98778 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7222 -1.2496 5 6 3.5711 -0.7706 -1.2124 6 7 4.0658 -1.5255 -2.3664 7 6 5.3090 -1.3011 -2.8358 8 8 6.0199 -0.4716 -2.3018 9 7 5.7639 -1.9952 -3.8977 10 6 7.0573 -1.7621 -4.3857 11 6 7.9804 -0.8397 -3.8676 12 6 9.1082 -0.9199 -4.6098 13 7 8.9095 -1.8521 -5.5653 14 6 9.8774 -2.2562 -6.5880 15 6 10.0827 -3.7477 -6.5239 16 1 9.5462 -4.3359 -5.7941 17 6 10.9564 -4.3615 -7.3964 18 7 11.6101 -3.6454 -8.2848 19 14 11.2114 -6.2103 -7.3165 20 1 10.3654 -6.7805 -6.2373 21 1 10.8325 -6.8189 -8.6169 22 1 12.6394 -6.5011 -7.0312 23 7 7.6155 -2.3650 -5.4087 24 6 4.0197 -1.4585 0.0806 25 6 3.4310 -0.7091 1.2788 26 1 3.7104 -1.2201 2.2002 27 6 3.9761 0.7202 1.3027 28 8 2.0068 -0.6743 1.1663 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5142 0.8898 31 1 -0.3633 0.5136 -0.8901 32 1 1.7147 -0.1842 -2.1399 33 1 1.6444 -1.7374 -1.2710 34 1 3.9688 0.2438 -1.2426 35 1 3.4984 -2.1869 -2.7925 36 1 5.1966 -2.6566 -4.3238 37 1 7.8201 -0.1856 -3.0233 38 1 10.0082 -0.3411 -4.4636 39 1 9.5000 -1.9834 -7.5735 40 1 10.8266 -1.7507 -6.4098 41 1 12.2244 -4.0771 -8.8988 42 1 3.6648 -2.4891 0.0869 43 1 5.1080 -1.4467 0.1408 44 1 3.5572 1.2547 2.1552 45 1 5.0624 0.6934 1.3884 46 1 3.6970 1.2310 0.3810 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161392976.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:11 Heat of formation + Delta-G solvation = 0.636703 kcal Electronic energy + Delta-G solvation = -26975.274095 eV Core-core repulsion = 23094.792773 eV Total energy + Delta-G solvation = -3880.481322 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.91240 -40.33133 -39.25076 -35.63073 -34.61196 -33.73994 -33.37557 -32.09721 -30.76718 -29.33941 -29.07834 -27.03314 -26.60257 -23.79446 -23.10186 -22.62988 -21.38864 -20.38832 -20.05014 -19.55908 -17.98997 -17.05628 -16.65997 -16.57097 -16.32487 -15.80506 -15.35072 -15.08720 -14.93692 -14.44924 -14.30831 -14.11104 -13.93318 -13.70463 -13.26528 -12.99587 -12.78490 -12.43073 -12.34538 -12.26557 -12.21863 -12.10703 -11.80246 -11.67410 -11.39183 -11.23383 -11.04527 -10.88428 -10.54736 -10.40192 -10.26234 -10.12442 -9.86939 -9.64283 -9.47788 -9.23145 -8.63618 -8.09605 -7.40914 -6.24173 -4.29019 2.35339 2.66559 3.10987 3.22124 3.29629 3.35873 3.38842 3.59428 3.83750 4.24155 4.26864 4.35302 4.39433 4.49110 4.69723 4.75600 4.89917 5.00603 5.02580 5.08212 5.10978 5.18473 5.33179 5.40669 5.50022 5.56510 5.59900 5.69360 5.74961 5.81295 5.81657 5.83749 6.00027 6.22141 6.31540 6.54566 6.59269 6.87557 6.93342 7.01639 7.11361 7.50166 7.70152 7.82916 7.98028 8.07453 8.58586 8.67188 8.81635 9.36560 10.84536 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.027816 B = 0.002152 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.367285 B =13006.884949 C =13227.058650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.087 3.913 3 H 0.065 0.935 4 C -0.158 4.158 5 C 0.164 3.836 6 N -0.740 5.740 7 C 0.714 3.286 8 O -0.567 6.567 9 N -0.644 5.644 10 C 0.275 3.725 11 C -0.286 4.286 12 C 0.051 3.949 13 N -0.320 5.320 14 C 0.258 3.742 15 C -0.527 4.527 16 H 0.069 0.931 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.907 3.093 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.282 1.282 23 N -0.308 5.308 24 C -0.163 4.163 25 C 0.092 3.908 26 H 0.105 0.895 27 C -0.188 4.188 28 O -0.375 6.375 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.396 0.604 36 H 0.406 0.594 37 H 0.161 0.839 38 H 0.167 0.833 39 H 0.045 0.955 40 H 0.057 0.943 41 H 0.266 0.734 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.369 7.796 16.524 27.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.083 0.917 4 C -0.196 4.196 5 C 0.059 3.941 6 N -0.396 5.396 7 C 0.413 3.587 8 O -0.442 6.442 9 N -0.293 5.293 10 C 0.021 3.979 11 C -0.318 4.318 12 C -0.099 4.099 13 N -0.102 5.102 14 C 0.141 3.859 15 C -0.565 4.565 16 H 0.087 0.913 17 C -0.142 4.142 18 N -0.534 5.534 19 Si 0.735 3.265 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.208 1.208 23 N -0.139 5.139 24 C -0.202 4.202 25 C 0.034 3.966 26 H 0.123 0.877 27 C -0.245 4.245 28 O -0.294 6.294 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.230 0.770 36 H 0.241 0.759 37 H 0.178 0.822 38 H 0.184 0.816 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.758 7.573 15.980 26.516 hybrid contribution 0.106 -1.051 -0.190 1.073 sum -19.653 6.522 15.790 26.040 Atomic orbital electron populations 1.21763 0.92812 1.03031 1.02558 1.22025 0.95090 0.95566 0.84425 0.91718 1.22560 0.94662 1.02852 0.99574 1.20849 0.92866 0.96446 0.83920 1.45116 1.14738 1.45048 1.34691 1.15640 0.81883 0.81364 0.79827 1.90859 1.56093 1.36656 1.60619 1.41395 1.13532 1.42506 1.31913 1.18782 0.85582 0.97793 0.95703 1.21502 0.93349 1.08748 1.08157 1.22556 1.00057 0.95311 0.92022 1.49050 1.09568 1.27035 1.24584 1.19737 0.84333 0.97318 0.84541 1.21298 1.25223 0.91287 1.18708 0.91272 1.24952 0.95201 0.99251 0.94764 1.69921 1.27566 1.36005 1.19878 0.86278 0.77961 0.84154 0.78136 1.19585 1.20704 1.20768 1.77321 0.94305 1.23205 1.19071 1.22661 1.02621 1.00356 0.94546 1.22147 0.80367 0.95760 0.98350 0.87733 1.22472 1.02451 0.96998 1.02574 1.87989 1.20958 1.77606 1.42840 0.91753 0.91689 0.91028 0.90108 0.90361 0.88813 0.76980 0.75913 0.82211 0.81551 0.93764 0.92541 0.92392 0.90884 0.89784 0.91861 0.90936 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.56 37.16 0.36 -0.44 16 2 C 0.09 0.61 2.94 -26.68 -0.08 0.53 16 3 H 0.06 0.44 6.34 -51.93 -0.33 0.11 16 4 C -0.16 -1.06 4.89 -26.59 -0.13 -1.19 16 5 C 0.16 1.48 2.23 -67.75 -0.15 1.33 16 6 N -0.74 -7.30 5.09 -58.49 -0.30 -7.60 16 7 C 0.71 10.30 8.50 -86.92 -0.74 9.56 16 8 O -0.57 -9.95 13.13 5.28 0.07 -9.88 16 9 N -0.64 -9.97 5.46 -15.51 -0.08 -10.06 16 10 C 0.28 5.57 8.11 -154.37 -1.25 4.31 16 11 C -0.29 -5.73 9.61 -39.83 -0.38 -6.12 16 12 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 13 N -0.32 -7.50 3.67 -62.56 -0.23 -7.73 16 14 C 0.26 6.59 6.26 -5.20 -0.03 6.56 16 15 C -0.53 -14.70 9.24 -34.44 -0.32 -15.02 16 16 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 18 N -0.90 -25.38 13.28 55.43 0.74 -24.64 16 19 Si 0.91 21.40 29.54 -169.99 -5.02 16.38 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 N -0.31 -7.12 12.42 31.44 0.39 -6.73 16 24 C -0.16 -1.47 5.22 -26.59 -0.14 -1.61 16 25 C 0.09 0.75 3.91 -26.68 -0.10 0.64 16 26 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 27 C -0.19 -1.44 8.65 37.16 0.32 -1.12 16 28 O -0.37 -3.30 10.24 -35.23 -0.36 -3.66 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 1.00 6.06 -51.93 -0.31 0.68 16 35 H 0.40 2.82 8.62 -40.82 -0.35 2.47 16 36 H 0.41 5.09 8.84 -40.82 -0.36 4.73 16 37 H 0.16 3.13 5.91 -52.49 -0.31 2.82 16 38 H 0.17 2.74 8.06 -52.49 -0.42 2.32 16 39 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 41 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.50 4.98 -51.93 -0.26 0.24 16 LS Contribution 372.73 15.07 5.62 5.62 Total: -1.00 -33.04 372.73 -9.09 -42.13 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.96 Total: 6.33 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -2.94 Total: -0.16 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 0.52 Total: -56.76 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.29 Total: -13.53 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.04 -9.09 -42.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161392976.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.765 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds