Wall clock time and date at job start Tue Mar 31 2020 14:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.48601 * 2 1 4 4 C 1.53095 * 109.47844 * 239.97483 * 2 1 3 5 5 C 1.53180 * 109.16191 * 182.39751 * 4 2 1 6 6 N 1.46502 * 109.54328 * 176.85057 * 5 4 2 7 7 C 1.34776 * 120.00065 * 155.17797 * 6 5 4 8 8 O 1.21594 * 119.99804 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00060 * 180.02562 * 7 6 5 10 10 C 1.40193 * 120.00043 * 180.02562 * 9 7 6 11 11 C 1.40402 * 125.97069 * 359.97438 * 10 9 7 12 12 C 1.35245 * 107.86627 * 179.77501 * 11 10 9 13 13 N 1.34963 * 107.85990 * 0.22862 * 12 11 10 14 14 C 1.46495 * 125.98010 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47319 * 125.00174 * 14 13 12 16 16 H 1.07996 * 120.00446 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99818 * 180.02562 * 15 14 13 18 18 N 1.31503 * 120.00345 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99856 * 179.97438 * 17 15 14 20 20 H 1.48512 * 109.46980 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47214 * 119.99768 * 19 17 15 22 22 H 1.48501 * 109.47130 * 240.00144 * 19 17 15 23 23 N 1.31205 * 125.97551 * 180.17889 * 10 9 7 24 24 C 1.53173 * 109.10851 * 56.93673 * 5 4 2 25 25 C 1.53101 * 109.16093 * 303.15191 * 24 5 4 26 26 H 1.09000 * 109.48523 * 177.50291 * 25 24 5 27 27 C 1.52998 * 109.41787 * 297.48609 * 25 24 5 28 28 O 1.42904 * 109.48415 * 57.47565 * 25 24 5 29 29 H 1.09003 * 109.47380 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47012 * 300.02202 * 1 2 3 31 31 H 1.08999 * 109.47101 * 60.01770 * 1 2 3 32 32 H 1.09005 * 109.51893 * 62.49813 * 4 2 1 33 33 H 1.08997 * 109.52403 * 302.30599 * 4 2 1 34 34 H 1.09001 * 109.54569 * 297.02748 * 5 4 2 35 35 H 0.96998 * 119.99397 * 335.18267 * 6 5 4 36 36 H 0.96998 * 119.99402 * 359.97438 * 9 7 6 37 37 H 1.08002 * 126.07048 * 0.04567 * 11 10 9 38 38 H 1.07999 * 126.07438 * 180.24830 * 12 11 10 39 39 H 1.09005 * 109.47217 * 245.00508 * 14 13 12 40 40 H 1.09005 * 109.47021 * 4.99647 * 14 13 12 41 41 H 0.97001 * 120.00648 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.52243 * 62.96839 * 24 5 4 43 43 H 1.09002 * 109.52397 * 183.15751 * 24 5 4 44 44 H 1.08997 * 109.47369 * 179.97438 * 27 25 24 45 45 H 1.09000 * 109.47249 * 299.99365 * 27 25 24 46 46 H 1.09005 * 109.46948 * 59.98778 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7222 -1.2496 5 6 3.5711 -0.7706 -1.2124 6 7 4.0658 -1.5255 -2.3664 7 6 5.3090 -1.3011 -2.8358 8 8 6.0199 -0.4716 -2.3018 9 7 5.7639 -1.9952 -3.8977 10 6 7.0573 -1.7621 -4.3857 11 6 7.9804 -0.8397 -3.8676 12 6 9.1082 -0.9199 -4.6098 13 7 8.9095 -1.8521 -5.5653 14 6 9.8774 -2.2562 -6.5880 15 6 10.0827 -3.7477 -6.5239 16 1 9.5462 -4.3359 -5.7941 17 6 10.9564 -4.3615 -7.3964 18 7 11.6101 -3.6454 -8.2848 19 14 11.2114 -6.2103 -7.3165 20 1 10.3654 -6.7805 -6.2373 21 1 10.8325 -6.8189 -8.6169 22 1 12.6394 -6.5011 -7.0312 23 7 7.6155 -2.3650 -5.4087 24 6 4.0197 -1.4585 0.0806 25 6 3.4310 -0.7091 1.2788 26 1 3.7104 -1.2201 2.2002 27 6 3.9761 0.7202 1.3027 28 8 2.0068 -0.6743 1.1663 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5142 0.8898 31 1 -0.3633 0.5136 -0.8901 32 1 1.7147 -0.1842 -2.1399 33 1 1.6444 -1.7374 -1.2710 34 1 3.9688 0.2438 -1.2426 35 1 3.4984 -2.1869 -2.7925 36 1 5.1966 -2.6566 -4.3238 37 1 7.8201 -0.1856 -3.0233 38 1 10.0082 -0.3411 -4.4636 39 1 9.5000 -1.9834 -7.5735 40 1 10.8266 -1.7507 -6.4098 41 1 12.2244 -4.0771 -8.8988 42 1 3.6648 -2.4891 0.0869 43 1 5.1080 -1.4467 0.1408 44 1 3.5572 1.2547 2.1552 45 1 5.0624 0.6934 1.3884 46 1 3.6970 1.2310 0.3810 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161392976.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:10 Heat of formation + Delta-G solvation = -21.295660 kcal Electronic energy + Delta-G solvation = -26976.225153 eV Core-core repulsion = 23094.792773 eV Total energy + Delta-G solvation = -3881.432381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.25250 -41.39195 -40.32617 -36.64242 -35.99338 -35.27810 -34.30583 -33.22166 -32.26530 -30.92838 -29.85564 -28.47016 -27.63814 -25.23901 -24.18429 -23.59298 -22.55151 -21.82091 -21.33634 -20.41986 -19.14701 -18.69708 -18.27221 -17.54068 -17.28441 -16.83764 -16.69596 -16.41329 -15.90013 -15.76868 -15.62387 -15.30886 -14.92350 -14.66272 -14.43763 -14.23878 -13.86230 -13.79685 -13.66727 -13.50992 -12.96978 -12.93443 -12.81770 -12.73465 -12.68012 -12.36160 -12.30899 -12.07622 -11.98424 -11.90199 -11.65115 -11.38481 -11.23890 -11.06378 -10.72495 -10.47429 -10.18034 -9.72195 -9.05261 -8.32942 -6.46995 1.07139 1.13061 1.37065 1.38421 1.51558 1.70523 2.10260 2.35761 2.40962 2.81121 2.98456 3.12288 3.63489 3.73654 3.88938 3.96385 4.05027 4.11751 4.28503 4.30968 4.38760 4.40413 4.52538 4.61454 4.75414 4.81445 4.85297 4.89483 4.94497 4.96151 4.98726 5.03569 5.08026 5.12111 5.17721 5.18511 5.32420 5.38742 5.49827 5.57113 5.76787 5.88711 5.98012 6.29745 6.33381 6.64058 6.76470 7.15237 7.22922 7.43018 8.74674 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.027816 B = 0.002152 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.367285 B =13006.884949 C =13227.058650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.082 3.918 3 H 0.066 0.934 4 C -0.149 4.149 5 C 0.162 3.838 6 N -0.718 5.718 7 C 0.712 3.288 8 O -0.598 6.598 9 N -0.637 5.637 10 C 0.285 3.715 11 C -0.292 4.292 12 C 0.056 3.944 13 N -0.345 5.345 14 C 0.272 3.728 15 C -0.546 4.546 16 H 0.052 0.948 17 C 0.017 3.983 18 N -0.920 5.920 19 Si 0.972 3.028 20 H -0.275 1.275 21 H -0.273 1.273 22 H -0.270 1.270 23 N -0.348 5.348 24 C -0.158 4.158 25 C 0.094 3.906 26 H 0.112 0.888 27 C -0.185 4.185 28 O -0.386 6.386 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.413 0.587 36 H 0.420 0.580 37 H 0.167 0.833 38 H 0.200 0.800 39 H 0.021 0.979 40 H 0.059 0.941 41 H 0.272 0.728 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.780 7.359 17.351 28.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.024 3.976 3 H 0.084 0.916 4 C -0.187 4.187 5 C 0.058 3.942 6 N -0.374 5.374 7 C 0.412 3.588 8 O -0.476 6.476 9 N -0.289 5.289 10 C 0.029 3.971 11 C -0.323 4.323 12 C -0.093 4.093 13 N -0.127 5.127 14 C 0.154 3.846 15 C -0.584 4.584 16 H 0.070 0.930 17 C -0.183 4.183 18 N -0.559 5.559 19 Si 0.797 3.203 20 H -0.200 1.200 21 H -0.198 1.198 22 H -0.195 1.195 23 N -0.179 5.179 24 C -0.197 4.197 25 C 0.036 3.964 26 H 0.130 0.870 27 C -0.242 4.242 28 O -0.305 6.305 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.250 0.750 36 H 0.257 0.743 37 H 0.184 0.816 38 H 0.217 0.783 39 H 0.039 0.961 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.234 7.130 16.823 28.013 hybrid contribution 0.441 -0.832 -0.353 1.006 sum -20.793 6.298 16.469 27.263 Atomic orbital electron populations 1.21770 0.91500 1.03257 1.03344 1.22195 0.96096 0.95479 0.83874 0.91634 1.22515 0.92388 1.03691 1.00107 1.20964 0.94510 0.95421 0.83323 1.44993 1.13137 1.44882 1.34395 1.15801 0.82853 0.80849 0.79324 1.90832 1.57340 1.37979 1.61414 1.41401 1.12165 1.43059 1.32242 1.19082 0.87003 0.96564 0.94443 1.21678 0.93395 1.08925 1.08323 1.23157 1.01312 0.94221 0.90603 1.48812 1.09790 1.28656 1.25472 1.19335 0.84750 0.96238 0.84313 1.21421 1.25607 0.92530 1.18812 0.93017 1.25750 0.94679 1.03707 0.94186 1.69995 1.27856 1.37810 1.20274 0.85290 0.78214 0.78672 0.78162 1.19956 1.19808 1.19527 1.77240 0.94717 1.25027 1.20952 1.22590 1.01270 1.00758 0.95096 1.22145 0.80319 0.95819 0.98165 0.87001 1.22439 1.02051 0.96936 1.02767 1.87985 1.20942 1.77883 1.43732 0.91778 0.91777 0.89435 0.88770 0.89389 0.90349 0.74995 0.74263 0.81569 0.78275 0.96067 0.92362 0.91842 0.90518 0.91911 0.91070 0.91555 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.56 71.98 0.69 -0.54 16 2 C 0.08 0.98 2.94 30.63 0.09 1.07 16 3 H 0.07 0.78 6.34 -2.39 -0.02 0.77 16 4 C -0.15 -1.64 4.89 30.69 0.15 -1.49 16 5 C 0.16 2.69 2.23 45.11 0.10 2.79 16 6 N -0.72 -12.96 5.09 -457.23 -2.33 -15.29 16 7 C 0.71 19.84 8.50 179.05 1.52 21.37 16 8 O -0.60 -20.70 13.13 -4.01 -0.05 -20.75 16 9 N -0.64 -19.19 5.46 -321.23 -1.75 -20.94 16 10 C 0.28 11.46 8.11 133.32 1.08 12.54 16 11 C -0.29 -11.58 9.61 22.11 0.21 -11.37 16 12 C 0.06 2.22 11.44 83.52 0.96 3.17 16 13 N -0.35 -16.38 3.67 -351.85 -1.29 -17.67 16 14 C 0.27 14.23 6.26 85.63 0.54 14.77 16 15 C -0.55 -30.95 9.24 25.60 0.24 -30.72 16 16 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 17 C 0.02 0.95 5.46 84.66 0.46 1.41 16 18 N -0.92 -52.28 13.28 21.45 0.28 -52.00 16 19 Si 0.97 43.75 29.54 68.60 2.03 45.78 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 23 N -0.35 -16.31 12.42 -54.44 -0.68 -16.99 16 24 C -0.16 -2.72 5.22 30.69 0.16 -2.56 16 25 C 0.09 1.42 3.91 30.63 0.12 1.54 16 26 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 27 C -0.18 -2.72 8.65 71.98 0.62 -2.09 16 28 O -0.39 -6.15 10.24 -148.98 -1.53 -7.68 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 1.60 6.06 -2.39 -0.01 1.59 16 35 H 0.41 4.87 8.62 -92.71 -0.80 4.07 16 36 H 0.42 10.03 8.84 -92.71 -0.82 9.21 16 37 H 0.17 6.43 5.91 -2.91 -0.02 6.41 16 38 H 0.20 6.31 8.06 -2.91 -0.02 6.28 16 39 H 0.02 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.06 2.97 8.07 -2.38 -0.02 2.95 16 41 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 42 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 43 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.06 0.91 4.98 -2.38 -0.01 0.90 16 Total: -1.00 -71.16 372.73 1.02 -70.14 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: -0.61 Total: 25.52 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 6.94 Total: 9.88 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -5.76 Total: -122.89 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -1.58 Total: -28.43 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -71.16 1.02 -70.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161392976.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.843 kcal (2) G-P(sol) polarization free energy of solvation -71.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds