Wall clock time and date at job start Tue Mar 31 2020 12:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47483 * 2 1 4 4 H 1.09006 * 109.46626 * 54.99783 * 3 2 1 5 5 N 1.46500 * 109.46879 * 295.00148 * 3 2 1 6 6 C 1.34774 * 120.00097 * 85.00095 * 5 3 2 7 7 O 1.21584 * 119.99949 * 359.97438 * 6 5 3 8 8 N 1.34776 * 119.99738 * 179.97438 * 6 5 3 9 9 C 1.40194 * 120.00361 * 179.97438 * 8 6 5 10 10 C 1.40407 * 125.96607 * 359.71463 * 9 8 6 11 11 C 1.35250 * 107.86258 * 179.82867 * 10 9 8 12 12 N 1.34959 * 107.86026 * 0.42968 * 11 10 9 13 13 C 1.46496 * 125.97751 * 179.70476 * 12 11 10 14 14 C 1.50697 * 109.46920 * 125.00009 * 13 12 11 15 15 H 1.08000 * 120.00746 * 0.02562 * 14 13 12 16 16 C 1.37886 * 119.99658 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00378 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99622 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47092 * 60.00196 * 18 16 14 20 20 H 1.48500 * 109.47047 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47021 * 300.00096 * 18 16 14 22 22 N 1.31206 * 125.97844 * 180.02562 * 9 8 6 23 23 C 1.53001 * 109.47230 * 174.99670 * 3 2 1 24 24 H 1.09000 * 109.86642 * 301.00711 * 23 3 2 25 25 C 1.54098 * 109.87723 * 180.02562 * 23 3 2 26 26 C 1.54813 * 104.30472 * 238.48010 * 25 23 3 27 27 C 1.55227 * 101.98357 * 339.26359 * 26 25 23 28 28 O 1.43744 * 109.87631 * 62.17024 * 23 3 2 29 29 H 1.09000 * 109.47106 * 300.00331 * 1 2 3 30 30 H 1.08999 * 109.46833 * 59.99878 * 1 2 3 31 31 H 1.08995 * 109.47614 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47106 * 239.99669 * 2 1 3 33 33 H 1.09004 * 109.46860 * 119.99660 * 2 1 3 34 34 H 0.97003 * 119.99117 * 264.99061 * 5 3 2 35 35 H 0.97005 * 120.00241 * 359.97438 * 8 6 5 36 36 H 1.07999 * 126.06761 * 359.97438 * 10 9 8 37 37 H 1.08001 * 126.06610 * 180.15393 * 11 10 9 38 38 H 1.08996 * 109.47466 * 244.99796 * 13 12 11 39 39 H 1.08997 * 109.47016 * 5.00257 * 13 12 11 40 40 H 0.97000 * 120.00317 * 180.02562 * 17 16 14 41 41 H 1.09002 * 110.48969 * 357.22346 * 25 23 3 42 42 H 1.09002 * 110.48612 * 119.74013 * 25 23 3 43 43 H 1.08999 * 110.90868 * 97.38351 * 26 25 23 44 44 H 1.09003 * 110.91016 * 220.99202 * 26 25 23 45 45 H 1.09002 * 110.51777 * 278.38206 * 27 26 25 46 46 H 1.09000 * 110.64403 * 155.43932 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6525 2.0974 -1.2518 6 6 0.4353 2.6644 -1.3669 7 8 -0.3414 2.6319 -0.4320 8 7 0.0790 3.2674 -2.5184 9 6 -1.1874 3.8567 -2.6385 10 6 -2.1802 3.8873 -1.6461 11 6 -3.2483 4.5479 -2.1480 12 7 -2.9514 4.9147 -3.4125 13 6 -3.8321 5.6478 -4.3252 14 6 -3.1260 6.8839 -4.8197 15 1 -2.1215 7.1014 -4.4878 16 6 -3.7624 7.7372 -5.6961 17 7 -4.9856 7.4728 -6.1000 18 14 -2.8868 9.2691 -6.3097 19 1 -1.6473 8.8768 -7.0272 20 1 -3.7800 10.0131 -7.2338 21 1 -2.5374 10.1354 -5.1553 22 7 -1.6542 4.4712 -3.6997 23 6 3.5649 1.4442 0.1258 24 1 3.8612 0.9424 1.0469 25 6 4.0888 2.8934 0.1274 26 6 5.0588 2.9508 -1.0779 27 6 5.3955 1.4508 -1.2923 28 8 4.1495 0.7792 -1.0066 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.2722 2.1231 -1.9977 35 1 0.6988 3.2936 -3.2642 36 1 -2.1036 3.4611 -0.6567 37 1 -4.1759 4.7430 -1.6305 38 1 -4.0877 5.0119 -5.1726 39 1 -4.7423 5.9354 -3.7990 40 1 -5.4332 8.0729 -6.7168 41 1 3.2672 3.5963 -0.0103 42 1 4.6202 3.1060 1.0551 43 1 4.5645 3.3675 -1.9554 44 1 5.9541 3.5210 -0.8299 45 1 6.1720 1.1305 -0.5976 46 1 5.7021 1.2692 -2.3224 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163792758.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:25 Heat of formation + Delta-G solvation = 4.614319 kcal Electronic energy + Delta-G solvation = -27443.111326 eV Core-core repulsion = 23562.802486 eV Total energy + Delta-G solvation = -3880.308840 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.89215 -40.21890 -39.19109 -35.95656 -34.51412 -33.39264 -32.56762 -32.15654 -30.71627 -29.98297 -29.21966 -26.65434 -25.76897 -23.22942 -22.80964 -22.06860 -21.41111 -20.68931 -20.28785 -19.74380 -18.07364 -17.08245 -16.62287 -16.55070 -16.30503 -15.83758 -15.59233 -15.18777 -14.69319 -14.38092 -14.11677 -14.01278 -13.94981 -13.51260 -13.41525 -12.79067 -12.71807 -12.35217 -12.25214 -12.17143 -12.13360 -11.74061 -11.63623 -11.40721 -11.26600 -11.03785 -10.88839 -10.87435 -10.78872 -10.35404 -10.23080 -10.11202 -9.99094 -9.60405 -9.46549 -9.05781 -8.60853 -8.04964 -7.36161 -6.22079 -4.27099 2.45277 2.72561 3.16965 3.26531 3.29721 3.34211 3.43289 3.67595 3.90420 4.13513 4.23437 4.31744 4.43255 4.50972 4.58251 4.84117 4.92445 5.03977 5.12852 5.14981 5.29216 5.30385 5.40394 5.45715 5.54002 5.59027 5.64617 5.71318 5.85752 5.86596 5.99723 6.17675 6.29729 6.37785 6.47808 6.54517 6.59238 6.68100 6.92273 7.06178 7.17249 7.55969 7.72037 7.87034 8.04678 8.11164 8.68298 8.70988 8.83690 9.38261 10.86550 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017753 B = 0.002668 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.860803 B =10493.374373 C =11674.210676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.131 4.131 3 C 0.170 3.830 4 H 0.101 0.899 5 N -0.733 5.733 6 C 0.713 3.287 7 O -0.564 6.564 8 N -0.645 5.645 9 C 0.277 3.723 10 C -0.285 4.285 11 C 0.049 3.951 12 N -0.321 5.321 13 C 0.259 3.741 14 C -0.528 4.528 15 H 0.068 0.932 16 C 0.062 3.938 17 N -0.896 5.896 18 Si 0.908 3.092 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.275 1.275 22 N -0.309 5.309 23 C 0.069 3.931 24 H 0.083 0.917 25 C -0.155 4.155 26 C -0.156 4.156 27 C 0.045 3.955 28 O -0.368 6.368 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.398 0.602 35 H 0.405 0.595 36 H 0.161 0.839 37 H 0.166 0.834 38 H 0.044 0.956 39 H 0.056 0.944 40 H 0.267 0.733 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.060 0.940 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.075 -13.043 12.830 26.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C 0.064 3.936 4 H 0.118 0.882 5 N -0.389 5.389 6 C 0.412 3.588 7 O -0.439 6.439 8 N -0.295 5.295 9 C 0.023 3.977 10 C -0.317 4.317 11 C -0.100 4.100 12 N -0.103 5.103 13 C 0.142 3.858 14 C -0.567 4.567 15 H 0.086 0.914 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.735 3.265 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.201 1.201 22 N -0.140 5.140 23 C 0.011 3.989 24 H 0.101 0.899 25 C -0.193 4.193 26 C -0.194 4.194 27 C -0.032 4.032 28 O -0.287 6.287 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.233 0.767 35 H 0.240 0.760 36 H 0.179 0.821 37 H 0.184 0.816 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.078 0.922 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 18.271 -12.759 12.200 25.406 hybrid contribution 0.937 0.863 -0.278 1.304 sum 19.208 -11.896 11.923 25.546 Atomic orbital electron populations 1.21801 0.94531 1.00368 1.03488 1.21907 0.97149 0.95583 1.02334 1.21084 0.91525 0.93856 0.87111 0.88154 1.44959 1.15606 1.60951 1.17411 1.15595 0.82315 0.78285 0.82563 1.90867 1.50877 1.63751 1.38408 1.41418 1.14566 1.57971 1.15538 1.18786 0.86142 0.98404 0.94379 1.21510 0.93320 1.14020 1.02807 1.22553 1.00499 0.99664 0.87333 1.49034 1.09797 1.40717 1.10774 1.19708 0.87198 0.90929 0.87991 1.21229 1.01754 1.05944 1.27733 0.91379 1.24944 0.94944 0.98493 0.95695 1.69906 1.12075 1.38139 1.33300 0.86392 0.79400 0.82026 0.78698 1.19956 1.21059 1.20061 1.77322 0.95602 1.20350 1.20758 1.23133 0.92774 0.92501 0.90522 0.89944 1.23014 1.00099 0.96980 0.99159 1.23183 0.99934 0.97324 0.98910 1.23627 0.87178 0.90786 1.01606 1.88921 1.35115 1.55711 1.48947 0.92158 0.92038 0.93925 0.91304 0.91557 0.76730 0.76050 0.82136 0.81640 0.93809 0.92595 0.92291 0.89682 0.90502 0.90346 0.90147 0.92177 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.51 37.16 0.32 -1.39 16 2 C -0.13 -1.25 5.43 -26.73 -0.15 -1.40 16 3 C 0.17 1.56 1.94 -67.93 -0.13 1.43 16 4 H 0.10 1.03 7.58 -51.93 -0.39 0.63 16 5 N -0.73 -7.57 4.32 -58.67 -0.25 -7.83 16 6 C 0.71 10.21 7.10 -86.92 -0.62 9.60 16 7 O -0.56 -9.52 10.60 5.29 0.06 -9.46 16 8 N -0.65 -10.08 5.45 -15.51 -0.08 -10.17 16 9 C 0.28 5.60 8.11 -154.36 -1.25 4.35 16 10 C -0.29 -5.70 9.61 -39.83 -0.38 -6.08 16 11 C 0.05 1.00 11.44 -17.24 -0.20 0.81 16 12 N -0.32 -7.56 3.67 -62.57 -0.23 -7.79 16 13 C 0.26 6.66 6.26 -5.20 -0.03 6.63 16 14 C -0.53 -14.81 9.24 -34.44 -0.32 -15.13 16 15 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.90 -25.51 13.29 55.43 0.74 -24.77 16 18 Si 0.91 21.44 29.54 -169.99 -5.02 16.42 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 N -0.31 -7.19 12.42 31.44 0.39 -6.80 16 23 C 0.07 0.50 3.17 -26.16 -0.08 0.41 16 24 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 25 C -0.15 -1.00 6.39 -25.20 -0.16 -1.16 16 26 C -0.16 -0.88 7.17 -24.60 -0.18 -1.05 16 27 C 0.04 0.26 7.72 38.34 0.30 0.55 16 28 O -0.37 -2.97 10.16 -35.23 -0.36 -3.33 16 29 H 0.06 0.76 7.84 -51.93 -0.41 0.35 16 30 H 0.06 0.88 5.64 -51.93 -0.29 0.59 16 31 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.70 7.90 -51.93 -0.41 0.29 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.40 3.52 8.15 -40.82 -0.33 3.18 16 35 H 0.41 5.27 8.84 -40.82 -0.36 4.91 16 36 H 0.16 3.12 5.91 -52.49 -0.31 2.81 16 37 H 0.17 2.75 8.06 -52.49 -0.42 2.33 16 38 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 40 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.08 0.68 7.35 -51.93 -0.38 0.30 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 373.05 15.07 5.62 5.62 Total: -1.00 -32.26 373.05 -9.20 -41.46 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -7.08 Total: 7.45 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -2.98 Total: -0.81 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: 0.56 Total: -57.35 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -0.30 Total: -12.79 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.26 -9.20 -41.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163792758.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.077 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds