Wall clock time and date at job start Tue Mar 31 2020 12:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47483 * 2 1 4 4 H 1.09006 * 109.46626 * 54.99783 * 3 2 1 5 5 N 1.46500 * 109.46879 * 295.00148 * 3 2 1 6 6 C 1.34774 * 120.00097 * 85.00095 * 5 3 2 7 7 O 1.21584 * 119.99949 * 359.97438 * 6 5 3 8 8 N 1.34776 * 119.99738 * 179.97438 * 6 5 3 9 9 C 1.40194 * 120.00361 * 179.97438 * 8 6 5 10 10 C 1.40407 * 125.96607 * 359.71463 * 9 8 6 11 11 C 1.35250 * 107.86258 * 179.82867 * 10 9 8 12 12 N 1.34959 * 107.86026 * 0.42968 * 11 10 9 13 13 C 1.46496 * 125.97751 * 179.70476 * 12 11 10 14 14 C 1.50697 * 109.46920 * 125.00009 * 13 12 11 15 15 H 1.08000 * 120.00746 * 0.02562 * 14 13 12 16 16 C 1.37886 * 119.99658 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00378 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99622 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47092 * 60.00196 * 18 16 14 20 20 H 1.48500 * 109.47047 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47021 * 300.00096 * 18 16 14 22 22 N 1.31206 * 125.97844 * 180.02562 * 9 8 6 23 23 C 1.53001 * 109.47230 * 174.99670 * 3 2 1 24 24 H 1.09000 * 109.86642 * 301.00711 * 23 3 2 25 25 C 1.54098 * 109.87723 * 180.02562 * 23 3 2 26 26 C 1.54813 * 104.30472 * 238.48010 * 25 23 3 27 27 C 1.55227 * 101.98357 * 339.26359 * 26 25 23 28 28 O 1.43744 * 109.87631 * 62.17024 * 23 3 2 29 29 H 1.09000 * 109.47106 * 300.00331 * 1 2 3 30 30 H 1.08999 * 109.46833 * 59.99878 * 1 2 3 31 31 H 1.08995 * 109.47614 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47106 * 239.99669 * 2 1 3 33 33 H 1.09004 * 109.46860 * 119.99660 * 2 1 3 34 34 H 0.97003 * 119.99117 * 264.99061 * 5 3 2 35 35 H 0.97005 * 120.00241 * 359.97438 * 8 6 5 36 36 H 1.07999 * 126.06761 * 359.97438 * 10 9 8 37 37 H 1.08001 * 126.06610 * 180.15393 * 11 10 9 38 38 H 1.08996 * 109.47466 * 244.99796 * 13 12 11 39 39 H 1.08997 * 109.47016 * 5.00257 * 13 12 11 40 40 H 0.97000 * 120.00317 * 180.02562 * 17 16 14 41 41 H 1.09002 * 110.48969 * 357.22346 * 25 23 3 42 42 H 1.09002 * 110.48612 * 119.74013 * 25 23 3 43 43 H 1.08999 * 110.90868 * 97.38351 * 26 25 23 44 44 H 1.09003 * 110.91016 * 220.99202 * 26 25 23 45 45 H 1.09002 * 110.51777 * 278.38206 * 27 26 25 46 46 H 1.09000 * 110.64403 * 155.43932 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6525 2.0974 -1.2518 6 6 0.4353 2.6644 -1.3669 7 8 -0.3414 2.6319 -0.4320 8 7 0.0790 3.2674 -2.5184 9 6 -1.1874 3.8567 -2.6385 10 6 -2.1802 3.8873 -1.6461 11 6 -3.2483 4.5479 -2.1480 12 7 -2.9514 4.9147 -3.4125 13 6 -3.8321 5.6478 -4.3252 14 6 -3.1260 6.8839 -4.8197 15 1 -2.1215 7.1014 -4.4878 16 6 -3.7624 7.7372 -5.6961 17 7 -4.9856 7.4728 -6.1000 18 14 -2.8868 9.2691 -6.3097 19 1 -1.6473 8.8768 -7.0272 20 1 -3.7800 10.0131 -7.2338 21 1 -2.5374 10.1354 -5.1553 22 7 -1.6542 4.4712 -3.6997 23 6 3.5649 1.4442 0.1258 24 1 3.8612 0.9424 1.0469 25 6 4.0888 2.8934 0.1274 26 6 5.0588 2.9508 -1.0779 27 6 5.3955 1.4508 -1.2923 28 8 4.1495 0.7792 -1.0066 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.2722 2.1231 -1.9977 35 1 0.6988 3.2936 -3.2642 36 1 -2.1036 3.4611 -0.6567 37 1 -4.1759 4.7430 -1.6305 38 1 -4.0877 5.0119 -5.1726 39 1 -4.7423 5.9354 -3.7990 40 1 -5.4332 8.0729 -6.7168 41 1 3.2672 3.5963 -0.0103 42 1 4.6202 3.1060 1.0551 43 1 4.5645 3.3675 -1.9554 44 1 5.9541 3.5210 -0.8299 45 1 6.1720 1.1305 -0.5976 46 1 5.7021 1.2692 -2.3224 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163792758.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:24 Heat of formation + Delta-G solvation = -16.343907 kcal Electronic energy + Delta-G solvation = -27444.020143 eV Core-core repulsion = 23562.802486 eV Total energy + Delta-G solvation = -3881.217656 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.23686 -41.33327 -40.12999 -36.94329 -35.93050 -35.26872 -33.50413 -32.99078 -32.28039 -30.90921 -30.66376 -28.50944 -26.57509 -25.03170 -23.39385 -23.37370 -22.10531 -21.95082 -21.36401 -21.17803 -19.25494 -18.67931 -18.24966 -17.59420 -17.18512 -16.86254 -16.58359 -16.53584 -16.12215 -15.69317 -15.45943 -15.23387 -14.62789 -14.48755 -14.44539 -14.19207 -14.14185 -13.77179 -13.66252 -13.52886 -13.02006 -12.90873 -12.71742 -12.62521 -12.40526 -12.26903 -12.05065 -12.01119 -11.85441 -11.71324 -11.52864 -11.46576 -11.34398 -10.98706 -10.71302 -10.65350 -10.03366 -9.69029 -9.01578 -8.31812 -6.46350 1.10943 1.19002 1.38505 1.40637 1.49518 1.76269 2.14937 2.36952 2.47263 2.91791 2.99445 3.19934 3.53222 3.73545 3.99459 4.02800 4.09368 4.20557 4.26251 4.30848 4.41891 4.48600 4.66623 4.70753 4.82305 4.84943 4.89466 4.92769 4.98119 4.98754 5.02503 5.03369 5.09946 5.13751 5.21163 5.22153 5.28274 5.54046 5.57420 5.61967 5.78495 5.91254 5.98678 6.02149 6.31835 6.64988 6.80584 7.18941 7.23524 7.51513 8.75372 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017753 B = 0.002668 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.860803 B =10493.374373 C =11674.210676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C 0.167 3.833 4 H 0.092 0.908 5 N -0.713 5.713 6 C 0.713 3.287 7 O -0.588 6.588 8 N -0.640 5.640 9 C 0.287 3.713 10 C -0.289 4.289 11 C 0.054 3.946 12 N -0.346 5.346 13 C 0.273 3.727 14 C -0.548 4.548 15 H 0.052 0.948 16 C 0.018 3.982 17 N -0.921 5.921 18 Si 0.972 3.028 19 H -0.273 1.273 20 H -0.273 1.273 21 H -0.269 1.269 22 N -0.350 5.350 23 C 0.075 3.925 24 H 0.101 0.899 25 C -0.154 4.154 26 C -0.154 4.154 27 C 0.043 3.957 28 O -0.385 6.385 29 H 0.049 0.951 30 H 0.032 0.968 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.408 0.592 35 H 0.417 0.583 36 H 0.169 0.831 37 H 0.199 0.801 38 H 0.020 0.980 39 H 0.058 0.942 40 H 0.273 0.727 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.093 0.907 45 H 0.073 0.927 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.162 -13.178 13.763 28.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C 0.063 3.937 4 H 0.110 0.890 5 N -0.369 5.369 6 C 0.412 3.588 7 O -0.465 6.465 8 N -0.292 5.292 9 C 0.031 3.969 10 C -0.320 4.320 11 C -0.095 4.095 12 N -0.128 5.128 13 C 0.155 3.845 14 C -0.586 4.586 15 H 0.071 0.929 16 C -0.182 4.182 17 N -0.560 5.560 18 Si 0.796 3.204 19 H -0.198 1.198 20 H -0.198 1.198 21 H -0.194 1.194 22 N -0.182 5.182 23 C 0.017 3.983 24 H 0.119 0.881 25 C -0.192 4.192 26 C -0.192 4.192 27 C -0.034 4.034 28 O -0.305 6.305 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.244 0.756 35 H 0.253 0.747 36 H 0.186 0.814 37 H 0.216 0.784 38 H 0.038 0.962 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.112 0.888 45 H 0.091 0.909 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 20.412 -12.928 13.144 27.506 hybrid contribution 0.354 0.785 -0.479 0.985 sum 20.766 -12.143 12.665 27.186 Atomic orbital electron populations 1.21726 0.96282 1.00220 1.01493 1.21864 0.95356 0.95869 1.03219 1.21230 0.93278 0.93324 0.85914 0.89037 1.44866 1.14128 1.59594 1.18306 1.15716 0.83145 0.78158 0.81741 1.90841 1.51944 1.64653 1.39094 1.41451 1.13328 1.57767 1.16622 1.19080 0.87478 0.96816 0.93506 1.21683 0.93282 1.14035 1.03027 1.23153 1.01782 0.98352 0.86186 1.48794 1.10147 1.42257 1.11621 1.19303 0.87534 0.89962 0.87730 1.21385 1.01368 1.07261 1.28611 0.92927 1.25752 0.95615 1.01340 0.95522 1.69988 1.13155 1.39259 1.33604 0.85403 0.78339 0.78345 0.78360 1.19803 1.19793 1.19435 1.77241 0.96076 1.22384 1.22460 1.23110 0.90878 0.93203 0.91096 0.88144 1.23001 0.99837 0.96002 1.00318 1.23183 1.00192 0.97528 0.98252 1.23767 0.86600 0.90514 1.02473 1.88903 1.36154 1.56201 1.49207 0.93217 0.94838 0.93167 0.91589 0.89389 0.75581 0.74666 0.81393 0.78400 0.96232 0.92452 0.91834 0.91437 0.89035 0.91004 0.88835 0.90922 0.88125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.51 71.98 0.61 -2.61 16 2 C -0.12 -2.18 5.43 30.59 0.17 -2.01 16 3 C 0.17 2.84 1.94 44.99 0.09 2.93 16 4 H 0.09 1.78 7.58 -2.38 -0.02 1.76 16 5 N -0.71 -14.07 4.32 -457.81 -1.98 -16.05 16 6 C 0.71 20.15 7.10 179.06 1.27 21.42 16 7 O -0.59 -19.77 10.60 -3.98 -0.04 -19.82 16 8 N -0.64 -19.91 5.45 -321.24 -1.75 -21.66 16 9 C 0.29 11.68 8.11 133.32 1.08 12.76 16 10 C -0.29 -11.52 9.61 22.11 0.21 -11.31 16 11 C 0.05 2.17 11.44 83.52 0.96 3.12 16 12 N -0.35 -16.61 3.67 -351.86 -1.29 -17.90 16 13 C 0.27 14.45 6.26 85.63 0.54 14.99 16 14 C -0.55 -31.31 9.24 25.60 0.24 -31.07 16 15 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 16 C 0.02 1.01 5.46 84.66 0.46 1.47 16 17 N -0.92 -52.74 13.29 21.45 0.28 -52.46 16 18 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 22 N -0.35 -16.62 12.42 -54.43 -0.68 -17.30 16 23 C 0.08 0.91 3.17 30.97 0.10 1.01 16 24 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 25 C -0.15 -1.67 6.39 31.58 0.20 -1.47 16 26 C -0.15 -1.39 7.17 31.98 0.23 -1.16 16 27 C 0.04 0.39 7.72 72.75 0.56 0.95 16 28 O -0.39 -5.32 10.16 -148.98 -1.51 -6.83 16 29 H 0.05 1.23 7.84 -2.39 -0.02 1.21 16 30 H 0.03 0.95 5.64 -2.39 -0.01 0.94 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 32 H 0.07 1.22 7.90 -2.39 -0.02 1.21 16 33 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.41 6.69 8.15 -92.71 -0.76 5.94 16 35 H 0.42 10.73 8.84 -92.70 -0.82 9.91 16 36 H 0.17 6.48 5.91 -2.91 -0.02 6.46 16 37 H 0.20 6.37 8.06 -2.91 -0.02 6.35 16 38 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.06 2.96 8.07 -2.39 -0.02 2.94 16 40 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 41 H 0.07 0.99 7.35 -2.39 -0.02 0.97 16 42 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 44 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -69.88 373.05 1.20 -68.68 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: -0.57 Total: 28.46 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 6.71 Total: 9.00 kcal Atomic # 7 Polarization: -119.95 SS G_CDS: -5.41 Total: -125.36 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -1.56 Total: -26.65 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -69.88 1.20 -68.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163792758.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.338 kcal (2) G-P(sol) polarization free energy of solvation -69.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds